Xenopus tropicalis (tropical clawed frog): 100485305
Help
Entry
100485305 CDS
T01011
Symbol
rc3h1
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xtr03000
]
100485305 (rc3h1)
04121 Ubiquitin system [BR:
xtr04121
]
100485305 (rc3h1)
Transcription factors [BR:
xtr03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
100485305 (rc3h1)
Ubiquitin system [BR:
xtr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
100485305 (rc3h1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
Prok-RING_4
zf-CCCH
zf-C3HC4_3
zf-C3HC4
zf-CCCH_UNK
zf-C3HC4_2
FYVE
zf_CCCH_4
zf-CCCH_4
Vesi_VP2
PaaA_PaaC
Baculo_IE-1
zf-RING_4
zf-RING_6
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
100485305
NCBI-ProteinID:
XP_002931481
Xenbase:
XB-GENE-5864196
UniProt:
F7C1X9
LinkDB
All DBs
Position
4:98005384..98059581
Genome browser
AA seq
1123 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IELLPVNSALLQLVGAQVPEQQQITLCGGCGAEDTKHYEEARKCVEELALYLKPLSTARG
VGLNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQ
LSSNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQAS
KTSIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRI
APDQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLE
LLANIDPSPDAPPPTWEQLEDGLVAVKTVVHGLVDYIQNHSKKGTDQQQPPQHSKYKTYM
CRDMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPIGAPDE
GPMDLPPRKPSGLPNGIVPGTQLISRSTDSGFESVLKQVKLDQLSSSAPGSPPELLDSVP
KASMSALPVNAHPAASRVSSDMPPLPVSKPIQMVPRGSQIYAPPPADTFYQECRGGGPPF
DAAPYAQGVYYPPQSSQCVSRFVRPPPAATEPAATYLDHYTPYLQDRVVSTQYGTPTQQY
QTIVPTQYQPHYDNRRVYPSNAPPYQREEIVRASPVPLEMPPAAISPYVPESRERYQGIE
GYYTHPGQIRPSYHREPYIRLPPQHTAQPHPSLDELHRRRKEIMLQLEERKVISPPPFAP
SPTLPHSFHPEEYLDEELKVPGKFKGNDYSQYSPWSCDTFGSYIGTKDNKSKDVSSGGSV
EVANVDSKSLRDQRIELQRRATEPGEDDLIPFGDRPTVSRFGAISRTSKALYQPPGPMQQ
VLAAQGAVKSSITDYSLYSHGGLSAASYPPHQNLSSQGQLSERERISKPLPTSEREQLRM
ELQQVNQQISQQTQMRGMEVATNRLLLPREAPSLGNQQPPPPQPPAKWPSMMSSEQLSLE
LHQVEREIGKRTRELSLESHSLSMKSKADTIKVENGQLEAPTSVLSHELPLTFSSEVPNG
SGLTQDISMLSSKTASLTLSEDPQAGGDKSEPLRSGVNSTAAP
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagcaccgcaatggaccgactttctgtcctgccctatttgcacccaaact
ttcgacgaaacaatccggaagcccatcagtctaggctgtggacacacagtttgcaagatg
tgcctaaacaagcttcaccgcaaggcttgtccatttgatcagaccaccatcaacacagat
attgagcttcttcctgtcaactctgctctcctgcaactggtaggagctcaggtgcctgaa
caacaacagatcaccctctgtggagggtgtggagcagaggacaccaaacattatgaggaa
gctaggaaatgtgtagaagaattagctctatatttaaaaccccttagcactgcaagaggt
gtaggtctaaacagcacaactcaaagtgtattgagtcgtccaatgcaaaggaaactggtg
acacttgtgcattgtcagttggttgaggaggaaggacgtattagagctatgagagcagct
cgttcgctgggagagagaacagtcactgagcttatcttgcaacaccaaaatcctcagcag
ctgtcttccaatctatgggcagctgtccgtgcccgtggctgccagtttctaggaccagcc
atgcaggaagaggcacttaagcttgtcctcctggctctggaagatggatctgcgctctca
cggaaagtccttgttttatttgtggtgcagagactcgaaccacggttcccccaagcctcg
aaaactagcattgggcatgttgtccagctgctctaccgagcctcttgctttaaggtaaca
aaacgtgatgaagactcctccctaatgcagctgaaggaggaatttcgcacctatgaagca
ctgcgtcgagagcatgattctcagattgttcaaatagccatggaagcaggattgcgcatt
gctcctgatcagtggtcctccctcctgtatggagatcagtcgcataaatcccacatgcag
tctatcattgacaagttgcagaccccagcctcgtttgctcagagtgtccaggaactgacc
attgctttgcaaaggactggagaccccgcaaatcttaatagacttcgacctcatttggag
ttgttagcgaacatagacccaagtccagatgcccctcctccaacatgggagcagttagag
gatggtctggtggcagtgaaaactgtagtgcatggattagtggattatattcagaatcat
agcaagaagggaacagaccaacagcagcctccacagcacagcaagtacaaaacatacatg
tgtagagatatgaaacagagaggaggctgtccccgtggggcaagctgcacctttgcccat
tctcaagaagagttagaaaagtttcggaaaatgaacaaacgtttggttccaagacggcca
ctcagtgcttcgcttggtcagttgaatgaggttggactaccgataggagcacctgatgaa
ggtcctatggacttgccaccccgaaagccaagtgggcttcccaacggcattgttccgggg
acacagctcatctcaaggagtacagactctggctttgagtcagtgctgaaacaagtaaaa
ttggatcaattgagcagcagtgcacctggatctcctccagaactgctggattctgtcccc
aaggcatctatgtctgctttgcctgtcaatgctcatcctgctgcttcgcgtgtatccagt
gatatgccaccattgccggtttccaagccaatccaaatggtgccacgtggttcacaaata
tatgcccctcctccagcagatacgttttaccaagaatgtcggggtggtggacctccattt
gatgcagctccctatgcacaaggtgtttattacccacctcagtcctcccagtgtgtttca
cgctttgtcagacctcctcctgctgccactgaaccagccgccacctacctcgaccactat
actccctacttacaggacagagttgtcagcacacagtatggcactcccactcagcagtac
cagacaattgtacccacccagtaccagccacattatgacaaccgtcgtgtttatccctct
aatgctccaccttaccaaagggaggaaatagttcgtgcaagtccggtgcctctagaaatg
cctcctgctgctatctctccctatgttcctgaatccagagagagatatcagggaattgaa
ggttattatacacatccaggacagataaggccatcatatcatagggaaccatatattcgt
ttgcctcctcagcacacagcacagcctcaccccagcctggatgaacttcatagacgccgt
aaggagatcatgcttcagctagaagaaagaaaagtgatttcccctcctccctttgcaccc
tcacctactctgcctcacagcttccatccagaagagtaccttgatgaggaattaaaagta
cctgggaaatttaaagggaacgattacagtcagtattcaccctggtcctgtgacacattc
ggctcctacattggaaccaaagacaacaaatccaaagatgtttcatctggtggcagcgtg
gaagtagctaatgttgacagcaaatccctacgagaccaacgcattgagcttcagcgaaga
gctacagagcctggtgaggatgatctgattccctttggagacagacctaccgtttctcgc
tttggggccatctcccgcacatcgaaggccctataccaaccaccaggcccaatgcagcag
gtcttggcagcccaaggagctgtaaaatctagcattacagattacagcttgtacagtcac
ggtggcttgagtgctgcatcatatccaccccatcaaaacctttcttctcagggacagtta
agtgagcgtgaaaggatatccaagcctttaccaacatctgaaagagaacagcttaggatg
gaactgcagcaagttaaccagcagatcagtcagcagacacaaatgcgtggcatggaggta
gctactaaccgcctgctgttgccaagagaggcaccttcacttggaaaccagcagccacct
ccaccacaaccaccagccaagtggccaagtatgatgtccagtgaacagctgagtcttgaa
cttcatcaagtggaacgggagattgggaagagaacacgtgaactcagcttggaaagccat
tctttgagtatgaaaagcaaggcagataccatcaaagtagaaaatgggcaactggaggca
ccgacaagtgttctatcacatgaactcccactaacattcagcagtgaggtgccaaatgga
tcaggtctgacacaggacatctccatgttgtctagcaagacagcatctttaactctttca
gaagatccacaggctggaggagacaagagtgagccgctgagatctggagttaattccact
gctgctccttaa
DBGET
integrated database retrieval system
