Xenopus tropicalis (tropical clawed frog): 100485623
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Entry
100485623 CDS
T01011
Symbol
lamb4
Name
(RefSeq) laminin subunit beta-4 isoform X1
KO
K06245
laminin, beta 4
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04510
Focal adhesion
xtr04512
ECM-receptor interaction
xtr04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100485623 (lamb4)
04518 Integrin signaling
100485623 (lamb4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100485623 (lamb4)
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Ortholog
Paralog
GFIT
Motif
Pfam:
EGF_laminin
Laminin_N
EGF_LMN_ATRN
LAMININ_IV_B
LAMB1
CCDC39
Motif
Other DBs
NCBI-GeneID:
100485623
NCBI-ProteinID:
XP_031754867
Xenbase:
XB-GENE-6050187
UniProt:
A0A6I8QFV1
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Position
3:75915291..75988213
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AA seq
1848 aa
AA seq
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MFLLALCFSDSKLQNSGEMFFLQLIHFITVLSLVKLEENCENRSCHPVIGDLLLGRSKQL
SASSTCGLDGPQKYCIISYLEDDQKCFHCDSRGSYDPYDNPSSHLIENVITTFEPEWKNK
WWQSENGVDHVSVRLDLETLFQFSHLVLTFKTFRPSAMLVERSRDFGKTWKVFKYFAHNC
DTAFPGIPKGHADEVGDVICDTRYSDIEPSTEGEVVLKALDPSFLIEDPYDPYIQDLITI
TNLRINFTKLHTLGDAISNEWQDEIEEKYYYAIYEMIVRGNCFCNGHARQCVPLQNMQAD
VASYPEMVHGRCVCQHNTDGVNCEKCKEFYNDTPWAPAVAFNDNACRKCNCNGHSEKCHF
DMAVYLANNRASGGVCEDCQDNTMGNQCELCKPYFYRNPVHDVADPYACIPCDCDENGSQ
GNGLCQSQTNHRTGTLAGACLCKENVEGIRCDQCKSGYFGLSANDPLGCQYCNCNPFGSL
KFSVCDTVTGECQCQQFATGRYCEECIPGYWGLGNSLHSCTPCNCDIGGARSDLCSQSNG
QCDCRPNMNGRHCNQPKPGYYIIPLDYYFYEAENALLLAKPENIVSSTPIPKCKDYFEKQ
GIDFRFENGRIILTNMTKQSLTERTYIKEIFPFSTNGFAEVVLRQPTPRSDITWTGPGFA
RVLNGAGLRFTVNNIPYPMEFVIAIRYEPEILEDWTARIVVNSPKGEASEHCRNSKPLDG
RDSLLLSATSRLALLNTSVCLTPETEYSVDVYLTQESNSDSNSYILIDSLGLIPQINSIK
KLCNQAELDEYDKYNCIEMASEIGTEILPNVCERLIVSMSARIHNGAVKCSCNIDGSLSP
ICSKFGGHCNCKPNVAGRCCDRCAVGSFGFDSDGCKECNCDTKGSVSPLCDQVTGQCVCR
GEIHGRQCDSCLPGYYGFPNCQPCQCNGNSEICDLVTGACLDCKGFTNGTNCERCQNNYY
GNPVLGQSCRPCMCPDSPNSNRYFAHSCHQDPDSAEMVCSCLSGYTGNNCEACPPGFYGN
MEEFGGRCLPCQCNNNIDVTNPESCDKVTGECLECLYNTYGANCESCLPGYFGSPLLQNC
RKCICNPVGTNVENCSVYEEIGECVCNKTTGQCPCLPNVIGTNCDKCASGYWGMSNGNGC
QPCDCYLNNSFGIQCNQFTGQCLCKPKHTGKKCNECEENHFGDAKYQCLPCKCNLEGTIR
PMCDKVTGSCICRPGVTGRYCDQCAPKFQQQFPECPQCHMCFEPWDSEVTSLSEAIHGLI
RLAANIGPKRPSQLGCDIQMSILQNKLSIIENAFKSPIISPQKYSQVKSYYDTIRQKVRK
VLISDVEPFSKIPRLNKTISIVEKEVNDLFKELERIKKIKEGETTIKRKVFIAAFDKISE
HYSTSVLAGEKLRNATRTTQAVTKTRKHILTILDNQEAKHKQNAEMLKKMKSLDISKMNE
MVCGAVWDFPCDIAPCGGALCRDKSGKRKCGGPNCNGALPLAKDALKTANDTDLKLRNLS
VHFLEAEKQINSIRYLAEDTKMKASQLDKKLSKAMNRLEADKMRAKELIKNVKDFLLDSI
PVYPCHRSLQGGSIPKTPQEVDATISPEDIENVVNQILAIKLPAAPYDLIDMLSKIKKYC
DSYQENKKSLQNQLEEVTKLNQRAKEARNLAETLPNTDEIWNTLKMAEDSQKKTSSVLKS
INNDLQDIRNKLLEAKSQADLTEDRMEVINDLYTQLETKIAELQDKMLKNRNSAAKAENE
AKAALQEAIESEKNLNNLKQKYAFLKEKLKKKEIPPEILERLQQLKKQAEDLSKEIDNKF
QSISDLEQKIDELNKTNQEKANQLKGLENQAIKLKNDIVHVETTYSTC
NT seq
5547 nt
NT seq
+upstream
nt +downstream
nt
atgtttttacttgccctgtgtttttcggacagcaaacttcagaattcaggtgaaatgttc
tttttgcaattaatccatttcataacagtgctgagtctagtaaaacttgaggaaaactgt
gaaaataggtcatgccatcctgtaattggagatctcttactgggacggagtaagcaactc
tctgcttcttccacatgtggtctagatggacctcagaaatactgcattattagctatctt
gaggatgatcaaaaatgttttcattgtgattcaagaggctcatatgatccttatgacaat
cccagtagtcatttaattgagaatgtgataacgacttttgaacctgaatggaaaaataaa
tggtggcaatcagaaaatggtgttgaccatgttagtgtcagactggacttggagacatta
tttcagttcagccaccttgttttgacatttaagactttccgcccatctgccatgttggtt
gaaaggtcaagagattttgggaaaacatggaaagtatttaagtattttgcccataactgt
gatactgctttccctggcataccgaaaggccatgctgatgaagtgggagatgtaatttgt
gatacaaggtactctgatatagagccatctactgaaggagaggtggttttaaaagcattg
gatcccagctttctcattgaagatccttatgacccatacatccaagatctaattacaata
acaaaccttagaataaattttactaaacttcacacccttggtgatgcaataagcaacgag
tggcaagatgaaatagaagaaaaatattactatgcaatctatgagatgattgttagagga
aattgcttctgcaatggtcatgcacgtcaatgtgttcctctacaaaatatgcaagcagat
gtggccagttatcctgaaatggttcatgggagatgtgtctgtcagcataacacagatggc
gtaaactgtgaaaaatgtaaagaattttataatgatactccatgggctccagctgttgcc
tttaacgataacgcctgccggaagtgtaactgcaatgggcattcagaaaaatgtcatttt
gacatggctgtatatctagcaaataacagagccagtggtggagtttgtgaagactgccaa
gacaataccatgggaaatcaatgtgaactgtgtaaaccatacttttaccggaatcctgtc
catgatgtagccgacccatatgcttgcatcccctgtgattgtgatgaaaatggaagccag
ggtaatggattatgtcaaagtcaaacaaatcacagaactggaaccctggctggtgcatgc
ttgtgcaaggaaaatgtggagggcatccgctgtgaccagtgtaaatctggttactttggg
ctgagtgccaatgatccattgggctgtcagtactgcaactgcaatccattcggaagccta
aagttctcagtctgtgatacagttaccggtgaatgtcaatgtcaacaatttgcaacaggt
cgatactgtgaagaatgtattcctggttactgggggcttggaaatagcctacattcctgt
acaccatgtaactgtgatattggtggagcacgcagtgatttatgctcccagagtaatggt
caatgtgactgtcgccctaacatgaatggccgccattgtaatcagcctaaaccaggttac
tatattataccacttgattactacttctatgaagcagaaaatgcactgcttctcgccaaa
cctgaaaacatagttagttcaactccaataccaaaatgcaaagattattttgaaaaacaa
ggaattgacttcaggtttgagaatggcagaataatactaacaaacatgactaagcaaagt
ttaactgagaggacatacataaaggagatttttcccttttctactaatggctttgcagag
gtggtgcttcgacagcctactcccagaagtgatataacttggacaggccctggttttgca
cgtgtccttaatggggctggattgaggtttactgtgaacaacattccctacccaatggaa
tttgtaattgcgatacgctatgaacctgagattctggaagactggactgccagaattgtg
gtaaactcgccaaaaggagaagcaagcgaacactgcagaaatagcaagcctcttgacggc
agagattcattacttctgagtgccacatctagattagccttgctgaacacctcagtatgt
ctgactccagagactgaatattcagtagatgtttatttaactcaggaatcaaattctgac
tcaaatagctatatattaattgattcgcttggactgataccccaaattaactcgataaaa
aagctgtgtaaccaagcagaactggatgagtacgacaagtacaactgcattgaaatggca
tctgaaataggaacagaaatacttcctaacgtgtgtgagaggctcattgtaagcatgtct
gcacgcatacataatggggctgtcaaatgtagctgtaatattgatggttctttaagccct
atctgtagcaaatttggaggtcactgtaactgcaagcctaatgttgctggccggtgttgt
gacaggtgtgctgtgggcagctttggctttgattcagatggttgcaaagagtgcaattgt
gatactaaaggttcagtaagccctttatgcgatcaagtgactggtcagtgtgtttgtcga
ggtgagatacatggccgccaatgtgacagctgcctacctggatattatggatttccaaat
tgccagccctgccaatgtaatggcaattcagagatttgcgatctagttactggagcctgt
ctagattgcaaaggatttacaaatggaacaaactgtgaaagatgccagaataattactat
ggaaatcctgttctgggacagtcttgtcgtccatgtatgtgtccagattctcctaatagt
aaccggtattttgcacattcctgccaccaagaccctgatagtgcggaaatggtgtgtagt
tgcttgagtggttacacaggaaataactgtgaagcatgtccccctggattttatggtaat
atggaagaatttggcgggcgctgcttaccctgtcaatgtaacaacaatattgatgtaact
aatcctgagtcctgtgataaagtcactggagaatgtttggaatgtttatacaacacttat
ggagcgaactgtgagtcatgtttacctggctactttggttctcctctgcttcagaactgt
agaaaatgtatatgtaatcctgtggggaccaatgtagagaactgttcagtgtatgaggag
attggtgaatgtgtatgtaataagactacaggccaatgcccatgcttgcctaatgtgatt
ggaacaaactgtgacaagtgtgcatctggatactgggggatgtccaatggaaatggatgt
caaccttgtgattgttacttaaacaactcatttggaatccagtgcaatcagtttacaggt
caatgtttatgcaagccaaaacatacagggaaaaagtgtaatgaatgtgaagaaaatcac
tttggagatgccaaataccaatgcttaccttgcaagtgtaacttggagggtaccatccgg
ccaatgtgtgataaagtcactggctcatgcatttgtaggcctggagtcactggaagatat
tgtgaccagtgtgctcctaaattccagcaacagtttccagaatgtcctcaatgtcatatg
tgctttgaaccatgggactcagaagtaacatctctttctgaagccatccatggccttatt
cgacttgctgcaaacataggccccaagagaccttcccaacttgggtgtgatatacaaatg
agcatacttcaaaacaaactttctatcatagagaatgctttcaagagtcccattatttca
cctcagaaatactcacaggtgaaaagttattacgacaccattcgacaaaaggttaggaaa
gtcctcatttctgatgttgaaccattcagcaagattcccagacttaacaaaactataagc
attgtggaaaaagaggttaatgatttgtttaaggagctggaaagaataaagaagattaaa
gagggagaaacaacaattaagaggaaagtttttatagctgcttttgataagatcagcgaa
cattattcaacatcagttttggctggagagaaattacgcaatgctacccgcaccacccag
gcagttaccaaaactagaaaacacattcttactatattagataaccaagaagcaaaacac
aaacaaaatgcagagatgttaaagaaaatgaaatctctggatataagcaaaatgaatgaa
atggtttgtggagcggtttgggattttccctgtgatattgcaccttgtggaggagcactc
tgtcgggacaagtcaggaaagagaaaatgtggtgggccaaactgcaatggagctttgcct
ctagccaaagatgcactgaaaactgcaaatgacacagatttgaagctacgaaatttgtca
gttcatttccttgaggctgagaaacagattaacagtataagatatctagcagaagatacg
aagatgaaagcatcacaactggataaaaaactaagcaaagccatgaatcgattggaagca
gataaaatgcgggcaaaagagctaattaaaaatgttaaagattttctgttagacagcata
cctgtgtacccttgccacagaagtctacagggaggaagtatccctaagacaccacaggaa
gtagatgctacaatatctcctgaagatatagaaaacgtagtgaaccaaattcttgccatt
aagctgcctgcggctccatatgatttaattgacatgctaagtaagatcaagaaatattgt
gatagctaccaggaaaataagaagagtttgcaaaaccaactagaagaggttacaaaactt
aaccaaagagcaaaggaagctagaaacctagctgaaactctcccaaacactgatgagata
tggaatactttaaaaatggcagaagactctcagaaaaaaacttcatctgtcctgaaaagt
ataaataatgatcttcaggatatcagaaataagcttttagaggctaaatcccaggcggat
ttgacagaggatagaatggaggttattaatgatctctatactcagctagaaacaaagata
gcagagctacaggataagatgctgaaaaatagaaacagtgctgcaaaagcagagaatgaa
gccaaggctgcattgcaggaagcaatagaaagtgaaaagaatcttaataatcttaaacag
aaatatgcatttctcaaagagaagctgaagaaaaaagaaattcccccagaaatattagaa
agactgcaacagttgaaaaaacaagctgaagatttatctaaagaaattgataacaaattt
caaagtatatcagacttggaacagaagattgatgaactgaataaaacaaatcaagaaaag
gctaatcaattaaaaggactagagaatcaagccataaagctgaaaaatgacattgttcat
gtagagactacatattctacttgttaa
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