Xenopus tropicalis (tropical clawed frog): 100485650
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Entry
100485650 CDS
T01011
Symbol
mkrn1
Name
(RefSeq) E3 ubiquitin-protein ligase makorin-1 isoform X3
KO
K15687
E3 ubiquitin-protein ligase makorin [EC:
2.3.2.27
]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xtr04121
]
100485650 (mkrn1)
Enzymes [BR:
xtr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
100485650 (mkrn1)
Ubiquitin system [BR:
xtr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
100485650 (mkrn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MKRN1_C
zf-CCCH_4
Torus
zf-CCCH
zf_CCCH_4
zf-CCCH_2
zf-CCCH_DUS3L
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-ANAPC11
zf-rbx1
zf-RING_5
zf-CCCH_PARP12
zf-CCCH_3
zf-C3HC4_4
Motif
Other DBs
NCBI-GeneID:
100485650
NCBI-ProteinID:
XP_002941657
Xenbase:
XB-GENE-959144
UniProt:
A0A8J0QXI9
LinkDB
All DBs
Position
3:complement(5316019..5326721)
Genome browser
AA seq
415 aa
AA seq
DB search
MAEAAAAPAPLTSAAAAGKAPLPAFPDNPPVGGWTRHVACRYFMHGVCKEGSNCRYSHDL
TSSRSTMICRYFQRGCCAYGDRCRYEHTKPLKEDLIGNTSTARSWPSESPAEPSSNINTP
DAYTQGTQKEDECREQPADPELKKQLCPYAAVGECRYGENCVYLHGDPCDMCGLQVLHPV
DTAQRSQHIKSCIEAHEKDMELSFAVQRSKDIVCGICMEVVYEKTNPGERRFGILSNCSH
SYCLKCIRKWRSAKQFESKIIKSCPECRITSNFVIPSEYWVEEKEEKQKLIQKYKEAMSN
KSCRYFDEGRGTCPFGGNCFYKHAYPDGRIEEPQPRQKSGMSSRYRSQRRNRFWDFDERD
GADPFENDEDEVVTFELGEMLLMLLAAGADEDLTDSEDEWDFFHDDMDDFYDLDL
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggcagcggcggctcctgcacctctcacatcagcagccgcggcagggaaggcc
ccgctgcccgctttccccgataatccccccgtgggtggctggactcggcacgtcgcctgc
aggtacttcatgcacggcgtgtgtaaggaaggaagtaattgtcgttattcccacgatctc
accagcagccgatcgaccatgatttgccgatatttccagcgaggctgctgcgcgtatgga
gaccgctgcaggtacgaacataccaagccacttaaggaagatctgattggaaatacctct
actgcgcggagctggccgagtgagtcccccgcggaaccgagcagcaatataaacacccca
gacgcctacactcagggaactcagaaagaagacgagtgcagggagcagcctgccgacccg
gagctaaagaaacaactgtgcccgtacgccgccgtgggggaatgccgctacggggagaac
tgcgtctacctgcatggggatccatgtgacatgtgcgggcttcaggtgctccatcctgtg
gatacagctcagagatcacaacacataaagtcttgcattgaggcgcacgagaaggatatg
gaactgtcattcgccgtccagcggagcaaagacatcgtgtgcgggatctgcatggaggtc
gtgtacgaaaagaccaacccgggcgagaggcgattcggcatcttgtccaactgcagccac
tcgtactgtctgaaatgtatccgcaagtggcgcagcgccaagcagttcgaaagcaagatc
atcaaatcttgcccagaatgtcgtatcacttcaaacttcgtcattccaagtgaatattgg
gtagaagagaaagaggagaagcagaagctgatccagaagtacaaagaggccatgagtaac
aaatcttgccgatatttcgatgaaggccgcgggacctgcccattcgggggcaactgcttt
tacaaacacgcttaccccgacggccgaatcgaggagccgcagcctcggcaaaagagcgga
atgtccagcagatatcggtcccagcgccggaatcggttttgggactttgacgagcgagac
ggcgccgacccgtttgagaatgacgaggatgaagtggtgacgttcgagctgggggagatg
ctgctcatgctattggccgcgggggcagacgaggacctgacggactcggaggacgagtgg
gatttcttccatgacgacatggacgatttttatgacctggacctatag
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