Xenopus tropicalis (tropical clawed frog): 100485675
Help
Entry
100485675 CDS
T01011
Symbol
chd1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xtr03021
]
100485675 (chd1)
03036 Chromosome and associated proteins [BR:
xtr03036
]
100485675 (chd1)
Transcription machinery [BR:
xtr03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
100485675 (chd1)
Chromosome and associated proteins [BR:
xtr03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
100485675 (chd1)
SLIK complex
100485675 (chd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD1_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
Motif
Other DBs
NCBI-GeneID:
100485675
NCBI-ProteinID:
XP_031749152
Xenbase:
XB-GENE-960477
UniProt:
A0A6I8SD56
LinkDB
All DBs
Position
1:176132471..176170561
Genome browser
AA seq
1797 aa
AA seq
DB search
MNGHSDEDSVSNSNGNSSHSDDDSGSGSGSSSGSSSDGSSSQSGSSDSESGSESGSQSDS
DTSKEKKTVQSKPPRLDGAEFWKSNPSILAVQRSAMLRKQQLQQQQQQQRQQASSNSGSD
EDSSSSDESDEDSSSDNKKKKRQDEDWQMSGSGSASDSPSASSSSDSDTGGDRQKSSGRD
SESDYEPSHKVKNKKSQNRSKVKNGKTSAGQKKRDADSSDDDYDDDYNKRVSRRQATVNV
SYKEDEEMKTDSDDLLEVIGEDVPQPEEDEFETIERVMDSRFGRKGATGGTTTIYAVEAD
GDPNANFNETKEAGETQYLLKWKGWSSIHNTWETEDTLKQQNVKGMKKLDNYKKKEQEKK
RWLKAASPEDIEYYNCQQELIDDLHKQYQIVERIIAHSNQKSAAGYPDYFCKWQGLPYSE
CSWEDGALIAKKFQARIDEYISRNQSKTIPFKECKVLKQRPRFVALKKQPSYIGGNKQLE
LRDYQLDGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLS
TLTSWQREIQIWAPLMNAVVYLGDINSRNMIRTHEWMHPQTKRLKLNVLLTTYEILLKDK
SFLGGVNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFI
MPEKFSSWEDFEEEHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRVEMSA
SQKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPEENEFYNRQEAL
QHLIRSSGKLILLDKLLVRLRERGNRVLIFSQMVRMLDILAEYLKSRQFPFQRLDGSIKG
EVRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHR
IGQKKQVNIYRLVTKGSVEEDIIERAKKKMVLDHLVIQRMDTTGKTVLHTGSTPSSSTPF
NKEELAAILKFGAEELFKEPEGEEEEPQEMDIDEILKRAETRENEGGPLTVGDELLSQFK
VANFSTMEEDDMVEPNRDSKSWEDIIPTDQRRRMEEEEREKELQEIYLLPRMRNCAKQAN
FNGSEGRRSRNRRYSGSDSDSMSDRKRPKKRGRPRTIPRENIKGFSDAEIRRFIKSYKKF
GGPLERLDAIARDAELVDKSETDLRRLGELIHSGCIKALKDSSGQERAGGRRGKMKGPTF
RISGVQVNAKLVSSHEDELAPLHKSIPSDPDERKRYVIPCHTKAAHFDIDWGKEDDSNLL
IGIYEYGYGSWEMIKMDPDLNLTQKILPDDPDKKPQAKQLQTRADYLIKLLNKDLLRKEA
QRLSSGGNSKRRKTRAKKSKNVKPVKVEEETKSESSPPSSENSEEEEDQEETVPLRTNNK
RRAEKENEDRTELDVSVNKEPEEKKEIKENKKDPKKEKKEKEEKRDTTEKEARDKKEIKT
KEPVKEKEIKEEKVTEVKAEKEKPKKSILADTPVHITASSEPVPISEEAEELDQKTFSVC
KERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYANPDQIKQWRKN
LWIFVSKFTEFDARKLHKLYKHAIKKRQESQHNDQNSSSSVNTNLRHPDVDRLKENSNHD
DSSRDSYSSERHSQYHDHHYKDRHQSDAYKKGDSRKRPYSSFSNGKDHRDWDHHYKQDRY
HSESKHRKLDDHRSRDHRSNLEGGLKDRSYSDHRSHSDHRLHSDHRSSSDYSHHKSSRDY
RYHSDWQLDHRASSSGPRSPLDQRSAYDSRSPLGRRSPYESSDHKSTPEHLWSGRKT
NT seq
5394 nt
NT seq
+upstream
nt +downstream
nt
atgaatggacacagcgatgaagacagtgtaagcaacagcaatggaaattcaagccattct
gatgacgattctggttcaggatctggatctagctctggaagcagtagtgatggaagcagt
agccagtcgggaagcagtgactctgaaagtggttcagaatcaggaagccaatctgattcg
gacacgtcaaaagaaaagaaaactgtacaatccaaaccaccaagattggatggagcagag
ttttggaagtccaatccaagtattctagctgtacaaagatcagctatgctaagaaagcag
cagctgcagcagcagcaacaacagcaaaggcagcaagcatcttcaaacagtggctcagat
gaggattcatccagcagtgatgaatctgatgaggactcttcaagtgacaataaaaagaaa
aaacgccaagatgaagattggcagatgtccgggtcaggttctgctagtgactctccatcg
gcaagttccagttcagattccgacacagggggggatagacagaaaagcagcggtagggac
agcgaatctgattatgaaccaagccataaagttaaaaacaagaaatctcaaaacagatct
aaagttaaaaatggaaagaccagtgctggccaaaaaaagagagatgcagattcatctgat
gatgattatgatgacgattataataaaagggtatctagaaggcaagctacagtaaatgtt
agttataaggaagatgaggagatgaagacagattctgatgatttgctagaagtcattggc
gaagatgtacctcagccagaagaagatgaatttgaaacaattgaaagagtaatggattca
cgatttggtcgtaaaggagctaccggtggcaccacgaccatttatgcagtagaggcagat
ggggatccaaatgcaaattttaatgagacgaaggaggccggagagacacagtatttatta
aaatggaaaggctggtccagtattcacaatacctgggaaacggaagatactctaaaacag
caaaatgtgaaaggaatgaaaaagcttgacaactacaagaagaaagagcaggaaaaaaaa
agatggttaaaagcagcttctccagaagatattgagtattataattgtcagcaagaactc
attgatgatctccataaacagtatcagatagtggagcgcatcatagcgcattcaaatcag
aaatcagcagcaggctatccagattatttctgcaaatggcaggggcttccgtattcagaa
tgcagttgggaggatggggcactcattgctaagaagtttcaggctcgaattgatgagtat
attagtcgcaatcagtctaagacaattcctttcaaagagtgtaaggttttaaagcagaga
ccgagatttgtagccttgaaaaaacaaccttcatacattggtgggaataagcagttggag
ctgagggactatcagttggatggattaaactggctagctcattcctggtgcaagggaaac
agttgtatcttggctgatgaaatgggtttaggaaaaacaatacagactatttctttttta
aactatctatttcatgaacaccagctgtatggaccctttcttcttgttgtgccactctct
acacttacctcctggcaaagagaaattcaaatttgggctcctttaatgaatgctgttgtt
tacttgggagatataaacagtaggaatatgatcagaacccatgaatggatgcatcctcag
accaagagattaaaattgaatgtgctgcttaccacctatgaaatattgctaaaggacaag
tcttttttaggtggtgttaactgggcttttataggagttgatgaagcacatcggttaaaa
aatgacgattcattactgtataagacactgatagacttcaagtctaatcatcgtctcttg
atcactggaactcctttgcaaaattcactaaaagaactctggtctttgcttcacttcatc
atgcctgaaaaattttcctcctgggaagacttcgaagaagagcatggaaaaggcagagag
tatggttatgccagtcttcacaaagagcttgagccattcctactaagaagggtgaagaaa
gatgtggaaaaatctttacctgctaaagtggaacaaattttgagagttgagatgagcgct
tcgcaaaaacaatactataaatggatcctaacaaggaattacaaggcactaagcaagggg
tctaaaggcagtacttcaggatttttgaacattatgatggaattaaaaaagtgttgtaat
cattgctacctcattaagccaccagaagaaaatgaattctacaacaggcaagaggctctg
cagcacttaataaggagcagtggcaagctaattcttctggacaagttattagtgcgtttg
cgagaacgtggcaacagggttctgattttctctcagatggtgcggatgctggatattctt
gcagaatatttaaaatcgcgacaatttccctttcagagattagatggttctatcaaagga
gaagtgagaaagcaagcacttgatcattttaatgctgaaggatctgaggatttttgcttt
ttgctctctacaagagcaggcggccttgggataaaccttgcatcagcagatactgttgtc
atttttgactctgactggaatccacaaaatgatctacaagctcaagccagagctcacaga
attgggcagaaaaagcaggtgaatatctatcgcttggttacaaaggggtcagttgaagaa
gatataattgaaagagcaaaaaagaaaatggtgcttgatcatcttgtaattcaaagaatg
gacacaacaggcaagactgttttacacactggatcaacaccctcaagctctactccgttt
aataaagaagaattggctgctattttgaagtttggtgctgaagaactttttaaagaacca
gaaggagaagaggaagaaccacaggaaatggacattgatgaaatcttgaagagggcagaa
acacgtgaaaatgaaggtggacctttaactgtaggagatgaattgctttctcaatttaag
gttgccaacttttcaactatggaagaagatgatatggttgaacccaatcgagactcaaag
tcatgggaggacatcattcccactgaccagaggagaagaatggaagaggaggaaagagaa
aaagaactgcaagaaatttatcttttgccaagaatgaggaattgtgccaagcaggcaaac
tttaatggaagtgaaggtagacgcagcaggaacagaaggtactctggatctgacagtgat
tccatgtctgatagaaaacgccccaaaaaaagaggtcggccacgaacaattccaagagaa
aatattaaagggtttagtgatgctgagatacggaggtttattaaaagctacaaaaagttt
ggcggacctctagaaaggttagatgcaatagcccgagatgctgagttggtggacaagtct
gagactgatcttcgtcgacttggagaattaatacacagtggctgcattaaagctttgaag
gatagttctgggcaagaaagggcaggaggaagacgtggaaaaatgaaaggaccaacattc
cgtatctcaggggtgcaagtgaatgcgaagttggtcagttctcatgaagatgaactagct
cctttacacaaatctattccttcagatcccgatgaaagaaaaagatatgttatcccatgc
cacaccaaagctgctcattttgatattgactggggcaaagaagatgactcaaacctctta
attggcatctatgaatatgggtatggcagctgggaaatgataaaaatggaccctgacctc
aacctaacacagaagattttaccagatgatccagataagaagccccaagccaagcagcta
cagaccagagctgactacctcattaaacttctcaataaagatctgcttaggaaagaagca
caaagactttctagtggaggtaattctaaaaggaggaaaaccagggcaaagaaaagcaaa
aatgtgaaacctgtaaaggttgaagaggaaacaaaaagtgaatcctcaccacccagttct
gaaaattcagaagaggaggaggatcaggaggaaactgtacccctcagaacaaataataaa
aggagagcagagaaagaaaatgaggaccgaacagagttagatgtcagtgttaacaaagag
ccagaagaaaagaaagagataaaagaaaataaaaaggaccctaagaaagaaaagaaggaa
aaagaagagaaaagagatacaactgaaaaagaagctcgagacaaaaaggaaattaaaacg
aaagagcctgttaaagaaaaagaaataaaagaagaaaaggtaaccgaggtcaaagctgaa
aaagaaaagccaaaaaaaagtatattagcagacaccccagttcatattactgctagcagt
gagccagtaccaatttctgaagaggctgaagagcttgatcagaaaactttcagtgtttgt
aaagaacgcatgaggccagtcaaagcagcattgaagcagctggatcggccagaaaaaggg
ctctctgagcgagaacaacttgagcacacacgacagtgcctgattaaaatcggggatcat
atcacagaatgtctgaaagaatatgcaaatcctgatcaaataaaacagtggagaaaaaat
ctttggatatttgtctccaaatttactgaatttgatgccagaaagttgcacaaattatac
aaacatgcaatcaaaaaacggcaagaatctcagcacaatgatcagaacagcagcagcagt
gtaaatacaaaccttcgtcatccagatgttgaccgactaaaagaaaacagcaaccatgat
gacagcagcagagatagttattcctctgaaagacattcacagtatcatgatcaccactac
aaagacagacatcagagtgatgcttataagaaaggagattccagaaaaaggccgtactcc
agcttcagcaatgggaaagaccacagagactgggaccaccactacaaacaggacaggtac
cacagtgaaagtaaacacagaaaattggatgaccacagaagtagagatcatagatcaaac
ctagaaggaggtttgaaggatagatcttatagtgatcatcgttcccattctgaccatcgt
ttacattctgaccacagatccagttctgattacagccaccataaatcttcaagagattat
cggtaccattcagactggcagttggaccacagagcctccagcagtgggccgaggtcacct
ttggaccagagatcagcgtatgactcccgatctcctttagggcgcaggtccccttatgaa
tcatctgatcacaagagcactcccgagcatttatggagtggtcgcaaaacataa
DBGET
integrated database retrieval system
