Xenopus tropicalis (tropical clawed frog): 100485835
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Entry
100485835 CDS
T01011
Symbol
ubb
Name
(RefSeq) polyubiquitin-B isoform X1
KO
K08770
ubiquitin C
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03320
PPAR signaling pathway
xtr04120
Ubiquitin mediated proteolysis
xtr04137
Mitophagy - animal
xtr04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
100485835 (ubb)
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
100485835 (ubb)
04137 Mitophagy - animal
100485835 (ubb)
09150 Organismal Systems
09152 Endocrine system
03320 PPAR signaling pathway
100485835 (ubb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xtr04121
]
100485835 (ubb)
Ubiquitin system [BR:
xtr04121
]
Ubiquitins and ubiquitin-like proteins
Ubiquitins
100485835 (ubb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ubiquitin
Rad60-SLD
Ubiquitin_2
DUF2604
TBK1_ULD
Rad60-SLD_2
Motif
Other DBs
NCBI-GeneID:
100485835
NCBI-ProteinID:
XP_012812976
UniProt:
A0A8J0SFF2
LinkDB
All DBs
Position
2:complement(30736834..30935236)
Genome browser
AA seq
1369 aa
AA seq
DB search
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR
LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ
QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIE
NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL
TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH
LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS
DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF
VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE
STLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK
QLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQD
KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLE
VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDCRSLADYNIQKESTLHLVLRLRGG
MQIFVKTLTGKTITLEVEPSDTIENVKGKIQDKEGIPPDQQRLIFAGKQLEDGRTLCDYN
IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKSKIQDKEGIPPDQQRLI
FAGKQLEDGRTLCDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKS
KIQDKEGIPPDQQRLIFAGKQLEDGRTLCDYNIQKESTLHLVLRLRGGF
NT seq
4110 nt
NT seq
+upstream
nt +downstream
nt
atgcagatctttgtgaaaaccctgactggcaaaaccattaccttggaagttgagccaagt
gacacaatagagaatgtcaaagcaaagatccaagacaaagaaggtatccccccagaccag
cagaggttgatctttgccggcaagcagctggaagatggccgcaccctttctgactataat
atccagaaagaatccaccctgcatcttgtccttcgtctgagaggtggaatgcagatcttt
gtaaaaaccctgactggcaagaccatcaccctggaggtagagccaagtgacacaatagag
aatgtcaaagcaaagatccaagacaaagaaggtatccctccagaccagcagaggttgatc
tttgccggcaagcagctggaagatggtcgcacactttctgactataatatccagaaagaa
tccaccctgcatcttgtccttcgtctgagaggtggaatgcagatctttgtaaaaaccctg
actggcaagaccatcaccctggaggtagagccaagtgacacaatagagaatgtcaaagca
aagatccaagacaaagaaggtatccctccagaccagcagaggttgatctttgccggcaag
cagctggaagatggccgcaccctttctgactacaacatccagaaagaatccaccctgcat
cttgtccttcgtctgagaggtggaatgcagatctttgtaaaaaccctgactggcaagacc
atcaccctggaggtagagccaagtgacacaatagagaatgtcaaagcaaagatccaagac
aaagaaggtatccctccagaccagcagaggttgatctttgccggcaagcagctggaagat
ggtcgcacactttctgactataatatccagaaagaatccaccctgcatcttgtccttcgt
ctgagaggtggaatgcagatctttgtaaaaaccctgactggcaagaccatcaccctggag
gtagagccaagtgacacaatagagaatgtcaaagcaaagatccaagacaaagaaggtatc
cctccagaccagcagaggttgatctttgccggcaagcagctggaagatggccgcacactt
tctgactataatatccagaaagaatccaccctgcatcttgtccttcgtctgagaggtgga
atgcagatctttgtaaaaaccctgactggcaagaccatcaccttggaagtagagccaagt
gacacaatagaaaatgtcaaagcaaagatccaagacaaagaaggtatccctccagaccag
cagaggttgatctttgccggcaagcagctggaagatggccgcaccctttctgactacaac
atccagaaagaatccaccctgcatcttgtccttcgtctgagaggtggaatgcagatcttt
gtaaaaaccctgactggcaagaccatcaccctggaggtagagccaagtgacacaatagag
aatgtcaaagcaaagatccaagacaaagaaggtatccctccagaccagcagaggttgatc
tttgccggcaagcagctggaagatggccgcacactttctgactataatatccagaaagaa
tccaccctgcatcttgtccttcgtctgagaggtggaatgcagatctttgtaaaaaccctg
actggcaagaccatcaccttggaagtagagccaagtgacacaatagaaaatgtcaaagca
aagatccaagacaaagaaggtatccctccagaccagcagaggttgatctttgccggcaag
cagctggaagatggccgcacactttctgactataatatccagaaagaatccaccctgcat
cttgtccttcgtctgagaggtggaatgcagatctttgtaaaaaccctgactggcaagacc
atcaccttggaagtagagccaagtgacacaatagaaaatgtcaaagcaaagatccaagac
aaagaaggtatccctccagaccagcagaggttgatatttgccggcaagcagctggaagat
ggccgcaccctttctgactacaacatccagaaagaatccaccctgcatcttgtccttcgt
ctgagaggtggaatgcagatctttgtaaaaaccctgactggcaagaccatcaccctggag
gtagagccaagtgacacaatagagaatgtcaaagcaaagatccaagacaaagaaggtatc
cccccagaccagcagaggttgatctttgcaggcaagcagctggaagatggccgcacactt
tctgactataatatccagaaagaatccaccctgcatcttgtccttcgtctgagaggtgga
atgcagatctttgtaaaaaccctgactggcaagaccatcaccctggaggtagagccaagt
gacacaatagagaatgtcaaagcaaagatccaagacaaagaaggtatccctccagaccag
cagaggttgatctttgccggcaagcagctggaagatggccgcacactttctgactataat
atccagaaagaatccaccctgcatcttgtccttcgtctgagaggtggaatgcagatcttt
gtaaaaaccctgactggcaagaccatcaccttggaggtagagccaagtgacacaatagag
aatgtcaaagcaaagatccaagacaaagaaggtatccctccagaccagcagaggttgatc
tttgccggcaagcagctggaagatggccgcacactttctgactataatatccagaaagaa
tccaccctgcatcttgtccttcgtctgagaggtggaatgcagatctttgtaaaaaccctg
actggcaagaccatcaccttggaggtagagccaagtgacacaatagagaatgtcaaagca
aagatccaagacaaagaaggtatccctccagaccagcagaggttgatctttgccggcaag
cagctggaagatggccgcacactttctgactataatatccagaaagaatccaccctgcat
cttgtccttcgtctgagaggtggaatgcagatctttgtaaaaaccctgactggcaagacc
atcaccttggaggtagagccaagtgacacaatagagaatgtcaaagcaaagatccaagac
aaagaaggtatccctccagaccagcagaggttgatctttgccggcaagcagctggaagat
ggccgcaccctttctgactacaacatccagaaagaatccaccctgcatcttgtccttcgt
ctgagaggtggcatgcagatctttgtaaaaaccctgactggcaagaccatcaccctggag
gtagagccaagtgacacaatagagaatgtcaaagcaaagatccaagacaaagaaggtatc
cccccagaccagcagaggttgatctttgccggcaagcagcttgaagattgccgtagtctt
gctgattacaatatacaaaaagagtcaactctgcatcttgtccttcgtctgaggggtgga
atgcagatctttgtaaaaaccctgactggcaagaccattactctggaggtagagccaagt
gacacaatagagaatgtcaaaggaaagatccaagacaaagaaggtatccctccagaccag
cagaggttgatctttgctggcaagcagctggaagatggccgcaccctttgtgactacaac
atccagaaagaatccaccctgcatcttgtacttcgtctgagaggtggaatgcagatcttt
gtaaaaaccctgactggcaagaccatcaccctggaggtagagccaagtgacaccatagag
aatgttaaatcaaagatccaagacaaagaaggtatccctccagaccagcagaggttgatc
tttgccggcaagcaactagaagatggccgcaccctttgtgactacaatatccagaaggaa
tccaccctgcatcttgtccttcgtctgagaggtggaatgcagatctttgtaaaaaccctg
actggcaagaccatcaccctggaggtagagccaagtgacaccattgagaatgttaaatca
aagatccaagacaaagaaggtatccccccagaccagcagaggttgatctttgccggcaag
cagctggaagatggccgcaccctttgtgactacaatatccagaaagaatcaactctgcat
cttgtccttcgtctgagaggtggcttttga
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integrated database retrieval system
