KEGG   Xenopus tropicalis (tropical clawed frog): 100485835
Entry
100485835         CDS       T01011                                 
Symbol
ubb
Name
(RefSeq) polyubiquitin-B isoform X1
  KO
K08770  ubiquitin C
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03320  PPAR signaling pathway
xtr04120  Ubiquitin mediated proteolysis
xtr04137  Mitophagy - animal
xtr04140  Autophagy - animal
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    100485835 (ubb)
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    100485835 (ubb)
   04137 Mitophagy - animal
    100485835 (ubb)
 09150 Organismal Systems
  09152 Endocrine system
   03320 PPAR signaling pathway
    100485835 (ubb)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:xtr04121]
    100485835 (ubb)
Ubiquitin system [BR:xtr04121]
 Ubiquitins and ubiquitin-like proteins
  Ubiquitins
   100485835 (ubb)
SSDB
Motif
Pfam: ubiquitin Rad60-SLD Ubiquitin_2 DUF2604 TBK1_ULD Rad60-SLD_2
Other DBs
NCBI-GeneID: 100485835
NCBI-ProteinID: XP_012812976
UniProt: A0A8J0SFF2
LinkDB
Position
2:complement(30736834..30935236)
AA seq 1369 aa
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR
LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ
QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIE
NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL
TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH
LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS
DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF
VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE
STLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK
QLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQD
KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLE
VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDCRSLADYNIQKESTLHLVLRLRGG
MQIFVKTLTGKTITLEVEPSDTIENVKGKIQDKEGIPPDQQRLIFAGKQLEDGRTLCDYN
IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKSKIQDKEGIPPDQQRLI
FAGKQLEDGRTLCDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKS
KIQDKEGIPPDQQRLIFAGKQLEDGRTLCDYNIQKESTLHLVLRLRGGF
NT seq 4110 nt   +upstreamnt  +downstreamnt
atgcagatctttgtgaaaaccctgactggcaaaaccattaccttggaagttgagccaagt
gacacaatagagaatgtcaaagcaaagatccaagacaaagaaggtatccccccagaccag
cagaggttgatctttgccggcaagcagctggaagatggccgcaccctttctgactataat
atccagaaagaatccaccctgcatcttgtccttcgtctgagaggtggaatgcagatcttt
gtaaaaaccctgactggcaagaccatcaccctggaggtagagccaagtgacacaatagag
aatgtcaaagcaaagatccaagacaaagaaggtatccctccagaccagcagaggttgatc
tttgccggcaagcagctggaagatggtcgcacactttctgactataatatccagaaagaa
tccaccctgcatcttgtccttcgtctgagaggtggaatgcagatctttgtaaaaaccctg
actggcaagaccatcaccctggaggtagagccaagtgacacaatagagaatgtcaaagca
aagatccaagacaaagaaggtatccctccagaccagcagaggttgatctttgccggcaag
cagctggaagatggccgcaccctttctgactacaacatccagaaagaatccaccctgcat
cttgtccttcgtctgagaggtggaatgcagatctttgtaaaaaccctgactggcaagacc
atcaccctggaggtagagccaagtgacacaatagagaatgtcaaagcaaagatccaagac
aaagaaggtatccctccagaccagcagaggttgatctttgccggcaagcagctggaagat
ggtcgcacactttctgactataatatccagaaagaatccaccctgcatcttgtccttcgt
ctgagaggtggaatgcagatctttgtaaaaaccctgactggcaagaccatcaccctggag
gtagagccaagtgacacaatagagaatgtcaaagcaaagatccaagacaaagaaggtatc
cctccagaccagcagaggttgatctttgccggcaagcagctggaagatggccgcacactt
tctgactataatatccagaaagaatccaccctgcatcttgtccttcgtctgagaggtgga
atgcagatctttgtaaaaaccctgactggcaagaccatcaccttggaagtagagccaagt
gacacaatagaaaatgtcaaagcaaagatccaagacaaagaaggtatccctccagaccag
cagaggttgatctttgccggcaagcagctggaagatggccgcaccctttctgactacaac
atccagaaagaatccaccctgcatcttgtccttcgtctgagaggtggaatgcagatcttt
gtaaaaaccctgactggcaagaccatcaccctggaggtagagccaagtgacacaatagag
aatgtcaaagcaaagatccaagacaaagaaggtatccctccagaccagcagaggttgatc
tttgccggcaagcagctggaagatggccgcacactttctgactataatatccagaaagaa
tccaccctgcatcttgtccttcgtctgagaggtggaatgcagatctttgtaaaaaccctg
actggcaagaccatcaccttggaagtagagccaagtgacacaatagaaaatgtcaaagca
aagatccaagacaaagaaggtatccctccagaccagcagaggttgatctttgccggcaag
cagctggaagatggccgcacactttctgactataatatccagaaagaatccaccctgcat
cttgtccttcgtctgagaggtggaatgcagatctttgtaaaaaccctgactggcaagacc
atcaccttggaagtagagccaagtgacacaatagaaaatgtcaaagcaaagatccaagac
aaagaaggtatccctccagaccagcagaggttgatatttgccggcaagcagctggaagat
ggccgcaccctttctgactacaacatccagaaagaatccaccctgcatcttgtccttcgt
ctgagaggtggaatgcagatctttgtaaaaaccctgactggcaagaccatcaccctggag
gtagagccaagtgacacaatagagaatgtcaaagcaaagatccaagacaaagaaggtatc
cccccagaccagcagaggttgatctttgcaggcaagcagctggaagatggccgcacactt
tctgactataatatccagaaagaatccaccctgcatcttgtccttcgtctgagaggtgga
atgcagatctttgtaaaaaccctgactggcaagaccatcaccctggaggtagagccaagt
gacacaatagagaatgtcaaagcaaagatccaagacaaagaaggtatccctccagaccag
cagaggttgatctttgccggcaagcagctggaagatggccgcacactttctgactataat
atccagaaagaatccaccctgcatcttgtccttcgtctgagaggtggaatgcagatcttt
gtaaaaaccctgactggcaagaccatcaccttggaggtagagccaagtgacacaatagag
aatgtcaaagcaaagatccaagacaaagaaggtatccctccagaccagcagaggttgatc
tttgccggcaagcagctggaagatggccgcacactttctgactataatatccagaaagaa
tccaccctgcatcttgtccttcgtctgagaggtggaatgcagatctttgtaaaaaccctg
actggcaagaccatcaccttggaggtagagccaagtgacacaatagagaatgtcaaagca
aagatccaagacaaagaaggtatccctccagaccagcagaggttgatctttgccggcaag
cagctggaagatggccgcacactttctgactataatatccagaaagaatccaccctgcat
cttgtccttcgtctgagaggtggaatgcagatctttgtaaaaaccctgactggcaagacc
atcaccttggaggtagagccaagtgacacaatagagaatgtcaaagcaaagatccaagac
aaagaaggtatccctccagaccagcagaggttgatctttgccggcaagcagctggaagat
ggccgcaccctttctgactacaacatccagaaagaatccaccctgcatcttgtccttcgt
ctgagaggtggcatgcagatctttgtaaaaaccctgactggcaagaccatcaccctggag
gtagagccaagtgacacaatagagaatgtcaaagcaaagatccaagacaaagaaggtatc
cccccagaccagcagaggttgatctttgccggcaagcagcttgaagattgccgtagtctt
gctgattacaatatacaaaaagagtcaactctgcatcttgtccttcgtctgaggggtgga
atgcagatctttgtaaaaaccctgactggcaagaccattactctggaggtagagccaagt
gacacaatagagaatgtcaaaggaaagatccaagacaaagaaggtatccctccagaccag
cagaggttgatctttgctggcaagcagctggaagatggccgcaccctttgtgactacaac
atccagaaagaatccaccctgcatcttgtacttcgtctgagaggtggaatgcagatcttt
gtaaaaaccctgactggcaagaccatcaccctggaggtagagccaagtgacaccatagag
aatgttaaatcaaagatccaagacaaagaaggtatccctccagaccagcagaggttgatc
tttgccggcaagcaactagaagatggccgcaccctttgtgactacaatatccagaaggaa
tccaccctgcatcttgtccttcgtctgagaggtggaatgcagatctttgtaaaaaccctg
actggcaagaccatcaccctggaggtagagccaagtgacaccattgagaatgttaaatca
aagatccaagacaaagaaggtatccccccagaccagcagaggttgatctttgccggcaag
cagctggaagatggccgcaccctttgtgactacaatatccagaaagaatcaactctgcat
cttgtccttcgtctgagaggtggcttttga

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