Xenopus tropicalis (tropical clawed frog): 100485942
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Entry
100485942 CDS
T01011
Symbol
arid5b
Name
(RefSeq) AT-rich interactive domain-containing protein 5B isoform X1
KO
K25857
AT-rich interactive domain-containing protein 5
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xtr03000
]
100485942 (arid5b)
Transcription factors [BR:
xtr03000
]
Eukaryotic type
Helix-turn-helix
ARID
100485942 (arid5b)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
ARID
BAH
UTP20
Motif
Other DBs
NCBI-GeneID:
100485942
NCBI-ProteinID:
XP_002939588
Xenbase:
XB-GENE-1007579
UniProt:
A0A6I8SQM9
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Position
7:17394852..17618193
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AA seq
1183 aa
AA seq
DB search
MEPNSLKWVGSACGLHGPYIFYKAFQFHLENRARILSLGDFFLVRCKADEPVCIAELQLL
WEERTSRQLLSSSKLYFLPEDTPKGRNSNHGEHEVIAVSEKVIVRLEDLVKWAHSDLSKW
NCGLKALPVELKELAKNGQKESLAKYRQSLLNSGLNFKDVFKEKAELGEGEDDKNVMVLS
YPQYCRYRSILKRIQAKPSSVLADQFVQALGGIPVINNNTKILYCRDTFDHPTLIENESI
CDEFAPNLKGRPRKKKFGPQRRESVNGVKELAGICDGKTVAKVKCEVKATLPKTKTPNGN
CKKILIEDKPKDGEDDGYKVEEGKAEEQSFLVALYKYMKERKTPIERIPYLGFKQINLWT
MFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILPYERFINGEED
KPLPLTKPRKPENGPQEVDMKVKICGTKRIKNEPQKPKKEKDAKGYDMAEVPPDEEDHLE
ADEKNMPFGYDSEETKTSVDKSESVVSEVKYPSLSENDELEETIANQDHVTQDEDSCQDA
DPVDSLICVKEIDSRQTDERLQMPNETMTITKQEQIKPDYSDHLEDDAEDVQLHVFPAVQ
PPRHDMEEEKLPDMPDYIANCTVKMDPLGSSDLKNPLDSNLFQNALKQNPKVYLVQTLDM
LNEKEAPPSMNDDSSFSYTPLLYSRGNPGIMSPLAKKKLLSQVSGASQPGNLPYGSPPPL
INKKKLSSKGEVSPSLLQTHHSSNSESVAINRPSVIQHVQSFKQKSPEEKKTVNDHYKNS
MFGKVDSYCCDFAKHQQSVLADSYALKASIQECKEKMAEKRAASNSNVPSFLAEFYSSPH
LHRLYRQTEHHLHNENSAKFHSREMFRDLENVSSSHKLHYHASLHQHDKQNLCDIVDDQP
TDLSLPKSLHKLATRIPGSSIAHHSVQQDAKSHNPFHTPNSKTLGVDCTPKACRVSPMTM
SMPKRNMDSIHRPSKTLKPDTVRKVEGLVHPFSIGKTSTQNFGPPRSLKRNLEDLDHPVT
EKKIRAVSPLSLPKEMSGKETFVGQDGESSKSVHDIHSGSMMESHKYPLSSPVFPGMYPG
SLCGGLSSRIPTAYSHPLQYLKNQTVLSPLMQPLALHTFMMQRQYLTNSTNSQQLYRQIA
SGAPVGSSYGDLLHNSIYPLTAINPQSPFPSSQMSSVHPSTKL
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atggagcccaactcactcaagtgggtcggatccgcctgcggtctgcatggaccttacatc
ttctataaagcctttcagttccacctggagaacagagcccggatcctgtcgcttggagac
tttttcttggtcagatgcaaagccgacgagcccgtttgtatagcggagctgcagctcctg
tgggaagagaggactagccggcaacttttatccagctccaaactttatttcctcccagaa
gatacccccaagggcagaaacagcaaccatggagagcatgaagttatagccgtttcggaa
aaggtcatagtccgcctggaggacttggtaaagtgggcacactcggatctctcaaaatgg
aactgtggactcaaggcattgcctgtagaactcaaggagcttgccaagaatggccagaaa
gagtccctggccaagtacagacaatcattgctaaacagtggattgaatttcaaggacgtc
ttcaaagaaaaagccgaattaggtgaaggcgaagacgacaaaaatgtgatggttttaagt
tatccccaatattgccgatatcggtctattctgaaacgaattcaggcaaaaccatcgtcg
gtactagcggaccaatttgttcaggccctcggagggattccagtcatcaacaacaacaca
aagatcctttattgtcgggacacctttgaccacccaactttgattgaaaacgaaagcatc
tgtgatgaatttgcaccgaatcttaaaggccgaccacgcaagaagaagtttggtccacag
agaagagagtctgttaatggtgtgaaggagttggccggcatatgtgatggaaaaactgtt
gccaaggttaaatgtgaagtcaaggccacattacccaaaactaaaactcctaatgggaac
tgcaaaaagatattgattgaagataaaccaaaagatggtgaagatgatggatataaagta
gaggaaggaaaggcggaagagcagtcatttttagtggcactctataaatacatgaaagag
cggaaaactcccattgaaaggataccgtatttaggcttcaagcagattaacctttggact
atgtttcaagctgcgcaaaaactgggaggatatgaaacgattactgcacggaggcaatgg
aaacatatttatgatgaactaggaggaaatcctggaagtactagcgctgctacatgtact
aggagacattacgagagattaatcctcccctatgaaaggttcattaatggagaggaagat
aaaccgttgcctctgaccaaacctcgaaaacccgagaatggccctcaggaagtggacatg
aaagtgaagatttgtgggacgaagcgcattaagaatgaacctcaaaagccaaaaaaagaa
aaggatgcaaagggctacgacatggctgaggttccaccagacgaagaggatcatctggaa
gcagatgagaaaaacatgcctttcggttacgattcagaggagacaaagacatctgtagac
aagtctgagtcagtggtctctgaagtcaagtatccctcactctcggaaaatgatgagctg
gaagaaaccattgctaaccaagaccatgtgacacaggatgaagattcatgtcaagacgct
gatcctgttgattcactgatttgtgttaaagagattgactccaggcaaacggacgagcgg
ctacaaatgcctaatgaaaccatgacaataacaaaacaagagcaaatcaaaccggattat
tccgatcacttggaagatgacgccgaggatgttcagctgcatgtgtttcccgccgttcag
ccgccacggcatgatatggaagaggaaaaacttccggatatgcctgattacattgctaat
tgcacagtgaagatggatccactgggatcaagtgatctaaagaatcccctggacagcaac
ttattccaaaatgcacttaagcagaatcccaaagtttacttagtacaaacactcgatatg
ctgaatgagaaagaggcacctccctcaatgaatgacgattcctcgttcagttacacgcct
ttgctttactcaagggggaatccaggaatcatgtctccccttgcaaaaaagaagctttta
tcgcaggtgagtggggcctcgcagcctggtaatctcccctatggttcaccacctccctta
ataaacaaaaaaaaattaagctctaaaggtgaagtatctccgtctttgttacagactcat
cattcgtccaattcggaatctgttgccataaacaggccttctgttattcagcacgtgcaa
agttttaagcaaaaaagcccagaggagaagaagactgtgaacgaccattacaaaaacagt
atgttcggcaaagtagactcttactgctgtgattttgcaaaacatcagcagagcgttctg
gctgactcttacgcgctcaaggccagcatacaggagtgcaaagagaaaatggcagaaaaa
agagccgcgtcaaactcaaatgtgcctagttttttggctgaattttattcctccccccac
ctgcacaggctgtataggcaaacggaacaccatcttcacaatgagaactctgcaaagttt
cactcccgggaaatgtttagggacttggaaaatgtttcttcttcacacaaactccattac
catgcttctttgcaccaacacgacaaacagaatttgtgcgatattgtagatgaccagccc
actgatttgagccttcccaaatctctgcacaaactcgccacaagaataccagggtcttct
attgcccaccattctgtacagcaagatgccaaaagccacaatccatttcacactccaaac
agcaaaacccttggtgtggactgcactccgaaagcctgcagggtttcgccaatgaccatg
tctatgcccaaaagaaatatggattccattcacaggccttcaaagactttaaaacccgat
actgtaagaaaagtggaaggtttagtccatccattctctattggtaaaaccagcactcag
aactttgggcctcctcgatccctcaaaagaaacttggaggacttggaccaccctgtcact
gagaaaaaaataagagctgtatctccactcagcttgccaaaggaaatgtctgggaaagag
acatttgttggtcaagacggggaaagcagcaaatcagtgcatgatattcattctggtagc
atgatggaaagccacaaataccccctttcatcacctgtctttcctggcatgtaccccgga
agcttatgtggtggtttaagttctcgcataccaactgcttattctcaccctttgcagtac
ttgaaaaaccagactgtgctttccccccttatgcaacctttggctcttcacaccttcatg
atgcaaagacaatatctgactaactctactaactctcagcagctgtacagacaaattgct
tcaggtgcaccagtaggctcttcctatggagacctactacacaacagcatttatccctta
actgccatcaacccccagtctccattcccttcctctcaaatgtcttctgtacatcccagc
acaaaactttaa
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