Xenopus tropicalis (tropical clawed frog): 100486029
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Entry
100486029 CDS
T01011
Symbol
gsdme
Name
(RefSeq) gasdermin-E isoform X1
KO
K22146
gasdermin-E
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
100486029 (gsdme)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
xtr02000
]
100486029 (gsdme)
Transporters [BR:
xtr02000
]
Other transporters
Pores ion channels [TC:
1
]
100486029 (gsdme)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Gasdermin
Gasdermin_C
Motif
Other DBs
NCBI-GeneID:
100486029
NCBI-ProteinID:
XP_002933445
Xenbase:
XB-GENE-983245
UniProt:
A0A7D9NJQ2
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Position
6:complement(40945452..40978495)
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AA seq
514 aa
AA seq
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MLGVLSTCSPLIKMFAKATKNFLKDIDAGGDLIPVYSLNDSDKAHLLGVVAKTRRFWCWQ
KPKYHFSSCSCTLSDIMTEDKEIKPVVVESEFVKYEGTFGDVIKGNIGAEVGALQMNASG
CGYVESQSSFGTLRKQEVDMQHLMKDVHDRRINLHHPFIKQLQENKNDVLCILKEKIVTT
QKCIITEHTQTEETFKGKVSMKAKIVKVSVSENGNYLKDENTILEIPPPTAIAYGVVELY
IKHNGTFDFCLLSEKKGGFEKENLEKHQHSNPLPSDQLVLFDWDVVDGSKEAFVRKCILR
SAPLCLLREGIAAHEKHFSAWKQLPDVQCLELYTLLCQILYDGQALSKLHAVVEDLCSKR
KPTQAAFDELMPSQRIIAENILYLSGYDMPNGKFLHAANRELLVALHILTSALNELSDSA
LAVLGTCCELQLLPVFSALMNMSSDEGLCSTTEPALMDFLDQERFYVSQKLFALFNIELE
IKEDFIYAATAEDPGFLPLILFIVITGLQLLKRD
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atgctgggagttttgtcaacctgctcgcccttgataaaaatgtttgcaaaagcaacaaag
aatttcctgaaagatattgacgctggaggtgatctaatacctgtatacagcctgaatgat
tctgataaggcacatcttctcggtgtggtggcaaaaaccaggagattttggtgctggcaa
aaaccaaagtaccacttttcatcatgttcgtgcacattgagcgacataatgaccgaggac
aaggaaataaaaccagttgtcgtggaatcagaatttgttaaatatgaagggacatttggc
gatgttataaaaggcaatattggagcagaagttggagccctacagatgaatgcctctgga
tgtggatatgtagaaagccagtcatcttttggcacactaagaaaacaagaagttgatatg
cagcatctcatgaaggatgtgcatgacagacggataaatttgcaccatccttttataaaa
caactgcaggagaataaaaatgatgtgctgtgcattttgaaagaaaagattgtgaccaca
cagaagtgtattataacagagcacacacaaacagaggaaactttcaaaggaaaagtcagc
atgaaagcaaaaatcgtaaaggtatcagttagtgaaaatggaaactatctcaaagatgag
aacacaattctggaaattcctccccctacagccattgcttatggtgtggtggaactgtac
ataaagcacaatggtacatttgatttctgtttgttatcggaaaaaaaaggaggatttgag
aaagaaaacctggagaagcaccaacatagtaatccacttccaagtgaccagttagtttta
ttcgactgggatgttgttgatgggagcaaggaagcgtttgtcagaaaatgtattctgcgc
agtgctccattatgtttgttgagggaaggaattgcagcacatgagaaacacttttctgca
tggaaacagcttccggatgtccagtgtctagagctgtatacactgctgtgtcaaatcctt
tatgatggtcaagcactgtctaagctacatgctgtggtagaagatctgtgttcaaaacgg
aagcccactcaggcagcttttgatgagttaatgccttcccagaggataatagcagagaac
attctgtacctttctggatatgatatgccaaatggaaagtttctacatgcagctaatcgg
gaactgctcgtggcactgcacatcctcacaagcgctcttaatgagttatcagactcggct
ttggcagttcttggcacttgctgtgagcttcagcttttacccgtattctctgctttgatg
aatatgtcatcagatgaaggactttgttcaacaacagaaccagctctgatggatttcctt
gaccaagaaagattttatgtttcacaaaaactatttgctttattcaacattgagcttgaa
ataaaggaggatttcatatatgcagcaacggcagaggatcctggctttttaccacttatt
ctttttatcgtaatcacgggtctgcagttattgaagagagactga
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