Xenopus tropicalis (tropical clawed frog): 100486079
Help
Entry
100486079 CDS
T01011
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain
KO
K06237
collagen type IV alpha
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04510
Focal adhesion
xtr04512
ECM-receptor interaction
xtr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100486079 (col4a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100486079 (col4a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
100486079 (col4a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
xtr04147
]
100486079 (col4a2)
00536 Glycosaminoglycan binding proteins [BR:
xtr00536
]
100486079 (col4a2)
Exosome [BR:
xtr04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
100486079 (col4a2)
Glycosaminoglycan binding proteins [BR:
xtr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100486079 (col4a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
100486079
NCBI-ProteinID:
XP_002933063
Xenbase:
XB-GENE-5950101
UniProt:
F6TF09
LinkDB
All DBs
Position
2:complement(117190555..117313485)
Genome browser
AA seq
1722 aa
AA seq
DB search
MAGTQSTKRCPTSRREYSCFQLQHYSVTWCMLFVVLVTCFAGNAHAGDKSYTGPCGGRDC
SQGCQCLPEKGSRGQPGPLGGQGTSGPPGLIGIAGLQGRKGDKGERGFPGVTGPSGDKGQ
SGVTGFPGADGVPGHTGQGGPRGKPGHDGCNGTQGDAGVGGSHGSRGPPGISGGFGAKGQ
KGEPFHVSIEVKNRLRGDPGEAGFNGIQGPRGSPGTAGFIGPQGYRGPRGPPGPPGPQGP
QGNRGLGYYGEKGEPGDPGPPGEQPRQGEREQKHKIEILLLQYKGAKGDQGEKGNPGDKG
QPAVTGEKGEEGITGFPGQRGFPGNDGNSGASGEIGFPGANGVPGLPGTKGKKGEVGDLG
PQGPVTFVNGQQKRKGYEGEIGFPGLNGVYGDDGDPGDPGFPGQNGSPSRFPGQTGDTGL
KGQRGPKGYQGDTGLPAFQPGPPGIDGAPGKEGPPGQPGYPGGRIGMKGLPGFPGRDGQR
GAPGSRGLRGIKGEQGECRCYEGDEAGRGPAGEPGPVGFPGFQGHAGRKGEAGDRGVQGL
PGAPGTVGLAGPAGFPGPAGEKGDKVFATEKGSKGAQGDSGFPGVPGRDGYPGRNGRDGS
PGFPGPSGDGIKGLPGSHGFPGLPGNAGARGETGFPGPGFPGSKGLRGEPGNRGVSGFPG
VPGLSGPQGDCYQETDEENEIGKEGTGCRLIAPPAPAGAPGPPGLPGYNGIRGQKGFPGP
HGFDGVFGLKGIKGDRGTDSLPGPPGFSGQRGDRGNAGLPGLPGVPGLSGKPGFKGVQGE
KGSVGDRLGAPSGEQGNTGLPGLQGLKGTQGDQGIPGLQGKVGTPGTPGNKGIKGSPGAP
GVPGIPGPAALFGFPGMPGNPGTPGPQGSMGPPGPPGQRGDEGEKGPPGPAGMKGLPGEL
GVGGFIGVRGRHGNPGIPGLVGMHGLPGVKGIKGSPGMEGFQGMKGAKGRPAWRGLKGPS
GNIGFPGVKGGNGTSGTKGDRGEQGPPGDPPKMPEMMLLTKGETGDQGVSGFKGISGLKG
SKGMPGPPGQLGLPGLPGLRSFEFGDKGETGTPGVIGNQGILGEVGPDGIIGFPGFTGPR
GTPGISGFPGVPGERGKYGDIGERGDTIDLPGERGTKGQGGTPGLPGQRGIHGEKGTTGD
EGFRGIEGVIGEHGQTGEKGFPGQQGLVGFPGSQGFPGLPGVPGEKGSSGFPGLPGQHGF
PGIRGIAGLDGLPGTKGINGQPGADIIGLKGFKGLSGGKGQPGEASTIVGMPGPAGSKGA
EGDQGLPGLIGLPGTVGVRGLPGFSNKTGLLGDVGPPGPPGLPGFPGPIGRPGLPSKPGV
KGVIGDLGLQGNYGAKGIPGDEGKVGVPGLAGIPGAKGLKGSAGFQGFVGVSGYRGDQGP
KGLRGDIGEYGLKGPPGQPGPMSEPPLITAEQGYPGAHGIIGHQGVQGDMGPKGLVGTPG
APGQTGKEGLPGVPGWPAPPGSRGEQGPMGRTGPNGFKGASGVPGRAGLPGMPGRSVNIG
YLLVKHSQTDEEPMCPVGMARLWTGYSLLYFEGQEKAHNQDLGLAGSCLQRFSTMPFLYC
NPGDVCYYANRNDKSYWLSTTAPLPMMPVVEEEIRPYISRCSVCEAPAVAIAVHSQDVSI
PHCPDGWRSLWIGYSFLMHTAAGDEGGGQSLSSPGSCLEDFRATPFIECNGGRGTCHYFA
NKYSFWLTTIDEPFQSSPPADTLKAGLIRTHISRCQVCMKNL
NT seq
5169 nt
NT seq
+upstream
nt +downstream
nt
atggcaggaactcaaagcaccaagagatgtcccacaagcaggagagagtacagctgtttt
cagctccaacactattcagtcacttggtgcatgctgtttgttgtactggtgacatgcttt
gctggaaatgcccatgctggtgacaagtcatatacaggcccctgtggaggaagagactgc
agtcagggatgccagtgtctgcccgagaaaggaagtcgtggacaaccaggacccctggga
gggcaaggtacctctggcccacctgggctaataggaatagcaggtctgcagggacgtaag
ggagacaaaggagaacgaggatttcctggagtgactggcccctctggagataagggccaa
agtggtgtgacaggttttcccggagctgatggcgtacctggacatacaggtcagggtggc
ccaagaggtaaaccaggtcatgatggttgtaatggaacacaaggcgatgctggtgtggga
ggttcacatggttcaagaggccctcctggaatttctggtggatttggtgccaaaggtcaa
aaaggagaaccgtttcatgtatcaatcgaggtgaaaaacagacttagaggagatcctggt
gaagcaggctttaatggtattcagggtccaaggggttctcctggaacagcaggcttcatt
gggccacagggttaccgtggacctcgtgggccacctggacctcctgggccacagggacca
caaggcaacaggggtcttggatattatggagaaaaaggagaacctggtgatcctggtcca
cctggtgaacaacctcgtcaaggagagagagaacaaaagcacaaaattgaaattctcttg
ctacaatataagggggccaagggggaccaaggagagaagggaaatcctggcgataaaggt
caaccagctgtcacaggagaaaaaggagaggaaggtattacaggatttcctggacaaagg
gggtttcctggtaatgatggtaacagtggagcttcaggagaaatagggtttcctggggca
aacggtgtacctggattacctggtactaaaggaaaaaagggagaggttggagacctagga
cctcaaggacctgttacttttgtcaatggtcaacaaaaaagaaaaggctatgaaggtgaa
attggatttccaggacttaatggggtttatggagatgatggagaccctggagatcctggt
tttccaggccagaatggatcaccaagtagatttccaggacaaacaggtgatacaggcttg
aaaggtcaaaggggtcccaaaggttaccaaggtgatacaggcttaccagcatttcagcct
ggacccccaggtatagatggagcccctggcaaagaaggaccacctggccaaccaggttat
ccaggtggacgcattgggatgaagggattacccgggtttcctggaagggatggacaaaga
ggagctcctggttctcgaggtttaaggggaatcaaaggtgaacaaggggaatgcagatgc
tatgaaggagatgaagctggcagaggccctgctggagagcctggtccagttggttttcca
ggttttcagggtcacgcaggcagaaagggagaagcaggagatagaggagtacaagggctt
ccaggagcaccaggcacagtgggtttagctggtcctgctgggtttcctggtcctgctgga
gagaagggtgataaagtatttgctacagaaaaaggttccaagggagcacaaggagactct
ggttttcctggtgttcctgggcgtgatggataccctggaagaaatggtagagatggtagt
cctggctttccaggcccttctggagatggtataaaaggactcccaggttctcatgggttt
ccaggactccctggtaatgctggtgctcgaggtgagacgggctttcctggaccaggattt
ccaggttcaaaagggctgcggggagagccaggaaacagaggagtgagcggatttccagga
gttcctggactttcaggcccccaaggtgactgctatcaagaaactgatgaagaaaatgaa
atagggaaagaagggactggctgcagactaattgcacctcctgctccagcaggtgcccca
gggccaccaggattaccaggatataacggtataagaggccagaaaggttttcccggacca
catggttttgatggcgtttttggattaaaaggcatcaaaggagaccgtggaaccgatagt
ttgccaggtccaccaggtttttctggacaaaggggagacagaggtaatgcaggactacct
ggcctacccggggtaccaggtttgtcaggaaaacctggctttaaaggggtacaaggagaa
aaaggaagtgtaggtgatcgcttaggagctccatcaggggagcaaggaaatactggcctg
cctggcttgcaaggacttaaaggaacacaaggggatcaaggcatacctggcctacaaggt
aaagttggaacaccaggaacacctggaaacaagggtattaaaggctctcccggggcccca
ggagtacctggaataccaggacctgcagcattatttggatttccaggaatgcccggaaac
ccaggcacaccaggaccccaaggttcaatgggacctccaggtcctccaggacagagagga
gatgaaggcgagaaagggccaccaggtccagctgggatgaaagggttacctggagaactt
ggtgttggaggatttattggtgttaggggcagacatggaaatccaggcatccctggcttg
gttggaatgcatggacttcctggtgtgaaaggcatcaaaggttcccctggcatggaaggc
ttccagggaatgaaaggagcgaaggggagacctgcatggagaggactcaaaggaccaagt
ggcaatataggatttccaggagtaaaagggggaaatggaacttccggtacaaaaggtgac
cgtggggaacaaggaccaccaggagacccccccaaaatgccagaaatgatgcttttgaca
aaaggcgaaacaggagatcaaggtgtctcgggctttaaaggaatttctggacttaaaggc
agtaaaggtatgcctggacctccaggacagctaggcttacctggcttgcctggactacga
agctttgaatttggagataaaggagaaactggtactcctggggttatcggtaatcaagga
attctaggagaagttggtccagacggaattattggcttcccaggatttactggtcccaga
ggtactcctggtatttctggctttcctggtgttcctggtgaaagaggcaaatatggagat
ataggagaaagaggtgatactattgatttaccaggagaaagaggaacaaagggtcagggt
ggaacccccgggctgccaggacagcgaggaatacacggagaaaaaggaactacaggagat
gaaggttttcggggtattgagggagtgataggggaacacggacaaacaggagaaaaagga
ttcccaggtcaacaaggccttgtgggctttccaggctcacagggttttccaggtctgcca
ggtgtgcctggcgagaaaggaagttctgggtttcctgggttacctggtcaacatggtttt
cctggcataagagggattgctggcctagatggtctgccaggcactaaaggaattaatgga
cagccaggtgcggatataattggtttaaagggatttaaaggtctaagtggtggaaagggt
caaccaggagaggctagtaccattgtaggaatgcctggacctgcaggatctaaaggagcc
gaaggggatcaaggtttacctggcttaattggacttcctggaacagttggagtccgtggc
ttgcctgggttttctaacaagacaggtttgctaggagatgttggacctccaggacctcct
ggactgccaggttttccaggccctatcggaagaccaggtttaccctctaaacctggagta
aaaggagtcataggggatctggggttacaagggaactatggtgctaaaggtattcctggt
gacgaaggaaaagtgggagttcctggactggctggaatacctggagccaaaggtttgaaa
ggcagtgctggcttccagggttttgttggggtatcagggtatcgaggagatcaaggacct
aaagggcttagaggtgacatcggagaatatggtttaaagggtcctcctggacaaccgggc
cctatgtctgaacctcctcttattacggctgaacaaggctaccctggagcacacggaatt
attggccatcaaggtgttcagggcgatatgggcccaaaaggtcttgtgggtactccaggt
gcccctggccaaaccggtaaagaaggcttaccaggtgtaccaggctggcctgctcctcca
ggcagtcgtggagaacaaggacccatgggacgaacaggacctaatggattcaaaggtgcc
agtggtgtgccaggcagggcagggcttcctgggatgcccgggagaagtgtcaatattggc
tatcttttagtcaagcacagtcaaacagatgaagagccaatgtgtcctgttggtatggcc
cgcttgtggactgggtatagtctcttgtattttgaaggacaggaaaaagcacacaatcaa
gacttaggtctagctggatcttgtttacagcgcttcagtacaatgccgttcctgtactgc
aacccaggggatgtctgttattatgccaaccgtaacgataagtcttattggctttccacc
actgcacctcttccaatgatgcctgtggttgaagaagaaattaggccatatattagccgt
tgctcagtgtgtgaggctccagcagtagcaattgctgttcacagtcaagatgtcagtatc
ccacattgcccagatggttggcggagcttgtggattggctactcctttctcatgcacact
gccgcaggcgatgaggggggaggacaatctctctcctcccctggaagttgtttggaagac
ttcagggcgactccattcattgaatgcaatggtggaagagggacctgccactactttgca
aacaaatacagtttctggcttactactattgacgagcccttccagagctctccgcctgca
gatacactaaaagctgggctgattcgaactcatatcagccgatgccaagtctgcatgaaa
aatttgtaa
DBGET
integrated database retrieval system
