Xenopus tropicalis (tropical clawed frog): 100486079
Help
Entry
100486079 CDS
T01011
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain
KO
K06237
collagen type IV alpha
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04382
Cornified envelope formation
xtr04510
Focal adhesion
xtr04512
ECM-receptor interaction
xtr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100486079 (col4a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100486079 (col4a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
100486079 (col4a2)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
100486079 (col4a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
xtr04147
]
100486079 (col4a2)
00536 Glycosaminoglycan binding proteins [BR:
xtr00536
]
100486079 (col4a2)
Exosome [BR:
xtr04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
100486079 (col4a2)
Glycosaminoglycan binding proteins [BR:
xtr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100486079 (col4a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
100486079
NCBI-ProteinID:
XP_002933063
Xenbase:
XB-GENE-5950101
UniProt:
F6TF09
LinkDB
All DBs
Position
2:complement(117190555..117313485)
Genome browser
AA seq
1722 aa
AA seq
DB search
MAGTQSTKRCPTSRREYSCFQLQHYSVTWCMLFVVLVTCFAGNAHAGDKSYTGPCGGRDC
SQGCQCLPEKGSRGQPGPLGGQGTSGPPGLIGIAGLQGRKGDKGERGFPGVTGPSGDKGQ
SGVTGFPGADGVPGHTGQGGPRGKPGHDGCNGTQGDAGVGGSHGSRGPPGISGGFGAKGQ
KGEPFHVSIEVKNRLRGDPGEAGFNGIQGPRGSPGTAGFIGPQGYRGPRGPPGPPGPQGP
QGNRGLGYYGEKGEPGDPGPPGEQPRQGEREQKHKIEILLLQYKGAKGDQGEKGNPGDKG
QPAVTGEKGEEGITGFPGQRGFPGNDGNSGASGEIGFPGANGVPGLPGTKGKKGEVGDLG
PQGPVTFVNGQQKRKGYEGEIGFPGLNGVYGDDGDPGDPGFPGQNGSPSRFPGQTGDTGL
KGQRGPKGYQGDTGLPAFQPGPPGIDGAPGKEGPPGQPGYPGGRIGMKGLPGFPGRDGQR
GAPGSRGLRGIKGEQGECRCYEGDEAGRGPAGEPGPVGFPGFQGHAGRKGEAGDRGVQGL
PGAPGTVGLAGPAGFPGPAGEKGDKVFATEKGSKGAQGDSGFPGVPGRDGYPGRNGRDGS
PGFPGPSGDGIKGLPGSHGFPGLPGNAGARGETGFPGPGFPGSKGLRGEPGNRGVSGFPG
VPGLSGPQGDCYQETDEENEIGKEGTGCRLIAPPAPAGAPGPPGLPGYNGIRGQKGFPGP
HGFDGVFGLKGIKGDRGTDSLPGPPGFSGQRGDRGNAGLPGLPGVPGLSGKPGFKGVQGE
KGSVGDRLGAPSGEQGNTGLPGLQGLKGTQGDQGIPGLQGKVGTPGTPGNKGIKGSPGAP
GVPGIPGPAALFGFPGMPGNPGTPGPQGSMGPPGPPGQRGDEGEKGPPGPAGMKGLPGEL
GVGGFIGVRGRHGNPGIPGLVGMHGLPGVKGIKGSPGMEGFQGMKGAKGRPAWRGLKGPS
GNIGFPGVKGGNGTSGTKGDRGEQGPPGDPPKMPEMMLLTKGETGDQGVSGFKGISGLKG
SKGMPGPPGQLGLPGLPGLRSFEFGDKGETGTPGVIGNQGILGEVGPDGIIGFPGFTGPR
GTPGISGFPGVPGERGKYGDIGERGDTIDLPGERGTKGQGGTPGLPGQRGIHGEKGTTGD
EGFRGIEGVIGEHGQTGEKGFPGQQGLVGFPGSQGFPGLPGVPGEKGSSGFPGLPGQHGF
PGIRGIAGLDGLPGTKGINGQPGADIIGLKGFKGLSGGKGQPGEASTIVGMPGPAGSKGA
EGDQGLPGLIGLPGTVGVRGLPGFSNKTGLLGDVGPPGPPGLPGFPGPIGRPGLPSKPGV
KGVIGDLGLQGNYGAKGIPGDEGKVGVPGLAGIPGAKGLKGSAGFQGFVGVSGYRGDQGP
KGLRGDIGEYGLKGPPGQPGPMSEPPLITAEQGYPGAHGIIGHQGVQGDMGPKGLVGTPG
APGQTGKEGLPGVPGWPAPPGSRGEQGPMGRTGPNGFKGASGVPGRAGLPGMPGRSVNIG
YLLVKHSQTDEEPMCPVGMARLWTGYSLLYFEGQEKAHNQDLGLAGSCLQRFSTMPFLYC
NPGDVCYYANRNDKSYWLSTTAPLPMMPVVEEEIRPYISRCSVCEAPAVAIAVHSQDVSI
PHCPDGWRSLWIGYSFLMHTAAGDEGGGQSLSSPGSCLEDFRATPFIECNGGRGTCHYFA
NKYSFWLTTIDEPFQSSPPADTLKAGLIRTHISRCQVCMKNL
NT seq
5169 nt
NT seq
+upstream
nt +downstream
nt
atggcaggaactcaaagcaccaagagatgtcccacaagcaggagagagtacagctgtttt
cagctccaacactattcagtcacttggtgcatgctgtttgttgtactggtgacatgcttt
gctggaaatgcccatgctggtgacaagtcatatacaggcccctgtggaggaagagactgc
agtcagggatgccagtgtctgcccgagaaaggaagtcgtggacaaccaggacccctggga
gggcaaggtacctctggcccacctgggctaataggaatagcaggtctgcagggacgtaag
ggagacaaaggagaacgaggatttcctggagtgactggcccctctggagataagggccaa
agtggtgtgacaggttttcccggagctgatggcgtacctggacatacaggtcagggtggc
ccaagaggtaaaccaggtcatgatggttgtaatggaacacaaggcgatgctggtgtggga
ggttcacatggttcaagaggccctcctggaatttctggtggatttggtgccaaaggtcaa
aaaggagaaccgtttcatgtatcaatcgaggtgaaaaacagacttagaggagatcctggt
gaagcaggctttaatggtattcagggtccaaggggttctcctggaacagcaggcttcatt
gggccacagggttaccgtggacctcgtgggccacctggacctcctgggccacagggacca
caaggcaacaggggtcttggatattatggagaaaaaggagaacctggtgatcctggtcca
cctggtgaacaacctcgtcaaggagagagagaacaaaagcacaaaattgaaattctcttg
ctacaatataagggggccaagggggaccaaggagagaagggaaatcctggcgataaaggt
caaccagctgtcacaggagaaaaaggagaggaaggtattacaggatttcctggacaaagg
gggtttcctggtaatgatggtaacagtggagcttcaggagaaatagggtttcctggggca
aacggtgtacctggattacctggtactaaaggaaaaaagggagaggttggagacctagga
cctcaaggacctgttacttttgtcaatggtcaacaaaaaagaaaaggctatgaaggtgaa
attggatttccaggacttaatggggtttatggagatgatggagaccctggagatcctggt
tttccaggccagaatggatcaccaagtagatttccaggacaaacaggtgatacaggcttg
aaaggtcaaaggggtcccaaaggttaccaaggtgatacaggcttaccagcatttcagcct
ggacccccaggtatagatggagcccctggcaaagaaggaccacctggccaaccaggttat
ccaggtggacgcattgggatgaagggattacccgggtttcctggaagggatggacaaaga
ggagctcctggttctcgaggtttaaggggaatcaaaggtgaacaaggggaatgcagatgc
tatgaaggagatgaagctggcagaggccctgctggagagcctggtccagttggttttcca
ggttttcagggtcacgcaggcagaaagggagaagcaggagatagaggagtacaagggctt
ccaggagcaccaggcacagtgggtttagctggtcctgctgggtttcctggtcctgctgga
gagaagggtgataaagtatttgctacagaaaaaggttccaagggagcacaaggagactct
ggttttcctggtgttcctgggcgtgatggataccctggaagaaatggtagagatggtagt
cctggctttccaggcccttctggagatggtataaaaggactcccaggttctcatgggttt
ccaggactccctggtaatgctggtgctcgaggtgagacgggctttcctggaccaggattt
ccaggttcaaaagggctgcggggagagccaggaaacagaggagtgagcggatttccagga
gttcctggactttcaggcccccaaggtgactgctatcaagaaactgatgaagaaaatgaa
atagggaaagaagggactggctgcagactaattgcacctcctgctccagcaggtgcccca
gggccaccaggattaccaggatataacggtataagaggccagaaaggttttcccggacca
catggttttgatggcgtttttggattaaaaggcatcaaaggagaccgtggaaccgatagt
ttgccaggtccaccaggtttttctggacaaaggggagacagaggtaatgcaggactacct
ggcctacccggggtaccaggtttgtcaggaaaacctggctttaaaggggtacaaggagaa
aaaggaagtgtaggtgatcgcttaggagctccatcaggggagcaaggaaatactggcctg
cctggcttgcaaggacttaaaggaacacaaggggatcaaggcatacctggcctacaaggt
aaagttggaacaccaggaacacctggaaacaagggtattaaaggctctcccggggcccca
ggagtacctggaataccaggacctgcagcattatttggatttccaggaatgcccggaaac
ccaggcacaccaggaccccaaggttcaatgggacctccaggtcctccaggacagagagga
gatgaaggcgagaaagggccaccaggtccagctgggatgaaagggttacctggagaactt
ggtgttggaggatttattggtgttaggggcagacatggaaatccaggcatccctggcttg
gttggaatgcatggacttcctggtgtgaaaggcatcaaaggttcccctggcatggaaggc
ttccagggaatgaaaggagcgaaggggagacctgcatggagaggactcaaaggaccaagt
ggcaatataggatttccaggagtaaaagggggaaatggaacttccggtacaaaaggtgac
cgtggggaacaaggaccaccaggagacccccccaaaatgccagaaatgatgcttttgaca
aaaggcgaaacaggagatcaaggtgtctcgggctttaaaggaatttctggacttaaaggc
agtaaaggtatgcctggacctccaggacagctaggcttacctggcttgcctggactacga
agctttgaatttggagataaaggagaaactggtactcctggggttatcggtaatcaagga
attctaggagaagttggtccagacggaattattggcttcccaggatttactggtcccaga
ggtactcctggtatttctggctttcctggtgttcctggtgaaagaggcaaatatggagat
ataggagaaagaggtgatactattgatttaccaggagaaagaggaacaaagggtcagggt
ggaacccccgggctgccaggacagcgaggaatacacggagaaaaaggaactacaggagat
gaaggttttcggggtattgagggagtgataggggaacacggacaaacaggagaaaaagga
ttcccaggtcaacaaggccttgtgggctttccaggctcacagggttttccaggtctgcca
ggtgtgcctggcgagaaaggaagttctgggtttcctgggttacctggtcaacatggtttt
cctggcataagagggattgctggcctagatggtctgccaggcactaaaggaattaatgga
cagccaggtgcggatataattggtttaaagggatttaaaggtctaagtggtggaaagggt
caaccaggagaggctagtaccattgtaggaatgcctggacctgcaggatctaaaggagcc
gaaggggatcaaggtttacctggcttaattggacttcctggaacagttggagtccgtggc
ttgcctgggttttctaacaagacaggtttgctaggagatgttggacctccaggacctcct
ggactgccaggttttccaggccctatcggaagaccaggtttaccctctaaacctggagta
aaaggagtcataggggatctggggttacaagggaactatggtgctaaaggtattcctggt
gacgaaggaaaagtgggagttcctggactggctggaatacctggagccaaaggtttgaaa
ggcagtgctggcttccagggttttgttggggtatcagggtatcgaggagatcaaggacct
aaagggcttagaggtgacatcggagaatatggtttaaagggtcctcctggacaaccgggc
cctatgtctgaacctcctcttattacggctgaacaaggctaccctggagcacacggaatt
attggccatcaaggtgttcagggcgatatgggcccaaaaggtcttgtgggtactccaggt
gcccctggccaaaccggtaaagaaggcttaccaggtgtaccaggctggcctgctcctcca
ggcagtcgtggagaacaaggacccatgggacgaacaggacctaatggattcaaaggtgcc
agtggtgtgccaggcagggcagggcttcctgggatgcccgggagaagtgtcaatattggc
tatcttttagtcaagcacagtcaaacagatgaagagccaatgtgtcctgttggtatggcc
cgcttgtggactgggtatagtctcttgtattttgaaggacaggaaaaagcacacaatcaa
gacttaggtctagctggatcttgtttacagcgcttcagtacaatgccgttcctgtactgc
aacccaggggatgtctgttattatgccaaccgtaacgataagtcttattggctttccacc
actgcacctcttccaatgatgcctgtggttgaagaagaaattaggccatatattagccgt
tgctcagtgtgtgaggctccagcagtagcaattgctgttcacagtcaagatgtcagtatc
ccacattgcccagatggttggcggagcttgtggattggctactcctttctcatgcacact
gccgcaggcgatgaggggggaggacaatctctctcctcccctggaagttgtttggaagac
ttcagggcgactccattcattgaatgcaatggtggaagagggacctgccactactttgca
aacaaatacagtttctggcttactactattgacgagcccttccagagctctccgcctgca
gatacactaaaagctgggctgattcgaactcatatcagccgatgccaagtctgcatgaaa
aatttgtaa
DBGET
integrated database retrieval system
