Xenopus tropicalis (tropical clawed frog): 100486136
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Entry
100486136 CDS
T01011
Symbol
pkd1l2
Name
(RefSeq) polycystic kidney disease protein 1-like 2
KO
K04988
polycystin 1L2
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
xtr04040
]
100486136 (pkd1l2)
04091 Lectins [BR:
xtr04091
]
100486136 (pkd1l2)
Ion channels [BR:
xtr04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
100486136 (pkd1l2)
Lectins [BR:
xtr04091
]
C-Type lectins
Others
100486136 (pkd1l2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Polycystin_dom
PKD_channel
PLAT
REJ
SUEL_Lectin
Ion_trans
Lectin_C
GPS
PKD
Abhydrolase_9_N
Motif
Other DBs
NCBI-GeneID:
100486136
NCBI-ProteinID:
XP_031756633
Xenbase:
XB-GENE-968335
UniProt:
A0A6I8PPD8
LinkDB
All DBs
Position
4:52652143..52712246
Genome browser
AA seq
2458 aa
AA seq
DB search
MWLWVAALCFLAPYSHADPSPCSKYQVLFNSSCYEFVRLERNFHSAQKWCERGGGHLTFI
DNQETQEFLGTYLSEDREWWIGLIYTPVNDSGQGFMTWLDASNLTFSYWHNGDPPETEKK
CGYLRRQSGYHWSTTDNCRQELFFICQFEFGHTISCENQNATLQCGSGEVVQISDSYYGR
RSPHFCTQEEHSQITSGCSWTNVKDLVAAQCQGLQACQITTDSSLFGTPCPTSGSYLSID
YNCIEGLQIELPDKCLVGENMTLTVNWLLSPYTGNLSCIISIEDGYSIDPYQPINVSSTV
THSFTLPGEFAVFVECSTSEWHVTAQKTITVEEHRAVLNITGCYSKFGSKNGVCSTYYGE
TLWIQVEISTGGEVNYTLLSNNIILSQFRAKTEDLTYNLTLDRVAQNLMGPGLHRLMIMA
SSNEIPFITPGNITVHLIEPVSGLLAELCNFVLEVGTELKINLSIAYGAPVNLMFNIIDV
NKTFSYTRENSSGEQQIYTIPVEAEGTYMVTVVAFNSFSNFSKNLGNITVLNSAYNNTGL
QDTEGKNENVTVIVKRTQAFRIEPSRYVNPFTSIVLHWPDSVGSNISWTCGSCWPGWFEC
VEQNLIDPLSENILIPANCLPPPNTAFTVLATDRASEKEILQDEQCLYVTAKSTLPIKIS
CKANCKEISLDEDMVFSATCDNKATFSWYLDTNFPKMTLSPPDACQHRDFRQSSLVLLQK
NTSTLVLNSTFLKTQTNTAFRIKLIAMNSQEYGEDTLVVSTVPPPEVPRCTIHPEEGSVL
STFQISCRAPCASTNSCIGDEQVTLTYCIYPKPNSQLYCGPDSELPSIFLPMGEKENDFI
LNLTVTVSNMYGTSVNTTLKVKVRQDEINTNSQTLVSLVSEKSANILKGDGVGSSLIQLY
KSVSSVLNQKIPEDSDSNPLQTEEKKELREVMLTALSAVNITSLHTALEMSEVLNDLTTR
NEELSASAQVEASSALKGISESLLTVRSEPEETRKEAVQHLFNAVSNVLEATALDSSRMA
PDMAAQSAVSLHLLGAVENLQSALLMGKLPDNEPTILTAPSASMYINRMKPGHLQGTSVN
IKDPSTAAFTLPSLSSLSIPIGNEDAVDLRMVSFLVNPFSSSNTFDISGSVGGLSLTSPD
GSVIPVKDLTEHIEIILPRFSELEDEKSILSLVNFTSLLINVTSSVNSLVVHLEPSEEIP
LVLYLGYEYQPNETNYDITTHLPSKMYNRENIYSWVIGPEELLFGEGTYYLIVRSELEDL
TPNDNLTIVVTCFSTQCMFWDEANQDWNSTGCHVGPKTTPSSTQCLCNHLTFFGSSFIVM
PNAVDVSRTVELFATFVDNPVVVTTVGCIALVYVLVMIWARRKDIQDNAKVKIIALEDND
PFAQYRYLVTVFTGHRRGAATTSKVTITLYGSDGESDPHHLSDPEGPVFERGGEDIFLLT
TLFPLGDVQTIRLWHDNSGDKPSWYVNRVLVHDMELDQKWYFLCNSWLSIEVGDCVLDKV
FSVATEEDMKQFSNLFFMKTSKGFRDGHIWYSVFSRSPRSSFTRVQRVSCCFSLLLCTML
TSIMFWGVPTDPAEQKMDMGKIEFTWQEVMIGFESSLLMFPINLLIVQIFRNIRPKPAKK
PAEKKERTFMSETIKKSPSSQEITSASLTPEAVMKDIRRIASSLSKTQKIPLPDVDLRKS
TDINKLLSLVEDIIRQQNRAGQEFYDESKKERSLILSLGSVDWQEELRSPTPEKSLREKP
RFSDQNRYLYLQLQHVEKKLEFLGPYQFQNPQCYSRAVSQVQHMKGILENQLCSSGAASE
VCSSSASLSEDGKKNTRGLPWWFVFIGWLLVAATSGVSAFFTMLYGLHYGKDSSIKWLIS
MAISFFESLFITQPLKVLGFAAFFALVLKKVEPEDEEETTINGNLSTPGDPNPLLGSRRD
SNIYQPPPPTDITKMKNNYMKEQKVFALIREILAYLGFLWMLLLVAYGQRDPNSYYLNKH
IESSFTDGFEDLCSYQEFFTWANTTLINNLYGSHPGFITDGNSKLVGGARMRQIRIKKDS
CPVASVLQSTIDNCRAPYSLDAEEMGHYDGSWNFSAITNATDVNSPWYYQNHSKLRGHPT
WGKLATYRGGGYVADLGNERKYAHRVLQDLFSNIWLDSYTRAVFVEFTVYNANVNLFCIV
KLMFETNALGTFFTRANLQSVRLYPFTDGLHIFVVAAEVIYFLFVIYYMVVQGKRMKAEK
WGYFRSKWNLLELALIIISWSALSVYVKRTILGTRDLRYYQEHKNEFVSFNETAAADAAL
GYLIAFLVLLSTIKLWHLLRLNPKLNMITATLRRAWGDISGFITVIVIMFLAYSIACNLI
FGWKLNSYKTVFDSAKTMVSLQLGIFNYEEVLDYNPVLGSFLVGSCIIFMTFVVLNLFIS
VILVAFSEEQKHHQASDEEEIVELLLWKICSFLGLRHKKEEASAMENVSKASPNAQDN
NT seq
7377 nt
NT seq
+upstream
nt +downstream
nt
atgtggctctgggttgcagctttgtgctttcttgctccatatagccatgcagaccccagt
ccttgttcaaaataccaagtcctttttaacagttcatgttatgaatttgtcagacttgag
cgcaactttcacagtgctcagaaatggtgtgaaagaggtggtgggcacctgaccttcatt
gataaccaggaaacgcaggaatttctgggaacctatttatctgaggatcgggaatggtgg
attggacttatttacaccccagttaacgactctggtcaaggatttatgacctggctggac
gcatccaatttgactttttcatactggcataatggagatccccctgagactgagaaaaaa
tgtggttacttaaggagacagagtggttatcactggagcactactgacaactgcagacaa
gaattatttttcatctgtcaatttgagttcggtcatacaatatcctgtgagaaccaaaat
gcaacactacagtgtggctcaggggaagttgtccagattagcgacagttattatggccgc
aggagccctcatttttgtactcaggaagagcactcacagatcacaagtggctgtagctgg
actaatgtgaaggacctagtggcagctcaatgccaaggacttcaggcctgtcagattaca
acagattcttccttatttggaacaccttgtccaacctctggcagttatttatccattgat
tacaattgtatagaaggcttgcagattgagttaccagataaatgcctagtgggtgaaaat
atgacacttacagtgaattggctcttatcaccttacactgggaatctctcttgtataata
agtattgaagatgggtattcaattgatccctaccagcctataaacgtgtcaagtactgta
actcacagcttcacattacccggggaatttgctgtgtttgtggaatgctcaactagtgaa
tggcatgtaacagctcagaagactatcaccgtagaggaacatagggctgttctcaatata
actggctgttatagcaagtttggatccaaaaatggagtctgtagtacgtattatggagag
actctgtggattcaagtagagataagcacaggtggagaggtcaactacactcttttatcc
aataacataatactgagtcagttcagagcaaagacggaagatcttacttacaatctaact
ctagacagagtagctcagaaccttatggggccaggattgcacagattaatgattatggct
tccagtaatgagataccattcatcacaccaggcaacattactgtccatttaatagaaccc
gtttctggtttgttggctgaattatgcaactttgttttggaagtgggtacagagctgaag
ataaatttgtccattgcttatggagcaccagtaaacctaatgtttaatatcattgatgtc
aataaaaccttcagctacacaagggaaaattcatcaggtgaacaacaaatctacactatt
ccagttgaagcagaaggtacctatatggttacagttgtagctttcaattccttctccaac
ttcagcaagaatcttggaaacattacagttttaaacagtgcctataacaatacagggctc
caagacactgaaggaaaaaatgaaaatgttacggtcattgtgaagagaacacaggctttt
cgaatagaaccatcaagatatgtgaatcccttcaccagcattgtccttcactggcctgac
agtgtgggctccaatatcagctggacttgtgggtcttgttggccaggatggtttgaatgt
gtggaacagaacctgattgaccccctttcagagaatatcctgatccctgccaattgtctt
cctcctcccaacactgccttcactgtattggctactgacagagccagtgaaaaggaaata
ttacaagatgagcagtgcttatatgtaacagcaaaatccactcttcccatcaaaatcagt
tgcaaagcaaactgtaaggagattagcctggatgaggacatggtgttcagtgctacttgt
gacaacaaggcaacattcagctggtatcttgatactaacttcccaaaaatgacactttca
ccacctgacgcctgccaacatcgtgattttagacaaagttccctggtactattacaaaag
aacacttctaccttggtactgaatagtacctttctgaagacccaaaccaatactgccttc
agaattaagcttatagcaatgaattcacaagagtatggagaggatacgttagttgtgagt
actgtgcctcccccagaggtacccagatgcactatacatccagaggaagggtcagtgctg
agcactttccaaatctcctgtcgtgctccctgtgcttcaacaaattcttgcatcggggat
gagcaagtcactctaacttactgcatctaccccaagcctaactcccagctctactgtggc
ccagattctgagttgccatcaatttttctgccaatgggagaaaaagaaaatgattttatt
ttaaatctcactgttactgttagtaacatgtatggtacttcagtaaatacaactctgaag
gttaaggtcagacaagatgagataaacactaatagtcagaccctggtgtctttggtgtct
gagaagtcagcaaacattttaaagggagatggtgttggctcctctctgatccagctctat
aaatctgtatcctctgtcttaaaccagaaaattcctgaggatagtgacagtaatcccctg
cagacagaagaaaagaaagagttacgagaagtgatgcttacagcgctctctgctgtcaat
atcacatccttgcacacagcccttgagatgtccgaggtgctgaatgaccttacaaccagg
aatgaggagctctctgcttctgcccaggtggaagctagcagcgctctgaaaggtatcagt
gagtccttactgactgtgaggagtgaaccagaggagacaaggaaggaggcagtacagcat
ttatttaatgctgtgagcaatgtattggaagccacggcactggatagcagcagaatggcc
cccgatatggctgcacagagcgcagtctcactccacttactgggtgcagttgaaaacttg
cagagcgctctactaatgggtaaactgccagataatgagcctaccattctaacagcaccc
tcagcttcaatgtacataaacaggatgaagcctggccacttgcagggaacttctgtgaat
attaaggatcccagcacagctgcgttcaccctaccgtctctctcctctctcagcatccct
attggaaatgaggatgctgtggatctacggatggtgagcttcttggtcaatcctttctct
tccagtaacacctttgacatcagtggatcagtgggaggcctaagtctcaccagtcccgat
ggctcagtcatccctgttaaagacctcactgagcatatagagatcattttgccaagattt
tctgagcttgaagatgagaagagtatattaagtctggtgaatttcacatctcttctcata
aatgtgacatcttctgttaattcccttgtggttcatttagaacccagtgaagaaatccct
ttggtgctctacctggggtatgaatatcaacctaatgaaaccaattatgacataactacc
catctgcctagcaaaatgtacaacagagaaaatatatattcttgggtaattggtccagag
gagctgctttttggggagggcacctactacttgattgtgagatcagagcttgaagacctg
accccaaatgacaatttgaccatagtcgtcacttgttttagtactcaatgtatgttttgg
gatgaggctaatcaggactggaatagtactggctgccatgtgggacccaaaaccactcct
agcagcacccaatgcctctgcaatcatctcaccttttttggaagctcctttatagtgatg
cccaatgcagttgatgtcagcagaacagtggaactctttgctacttttgtggataaccct
gtggtggtcactacagttggctgtatcgctcttgtatacgtcttagtgatgatctgggcc
agaagaaaagatattcaagacaatgcaaaggtgaaaattatagctttggaggacaatgac
ccatttgcccagtatcgttaccttgttactgttttcactggtcatcgcagaggagctgca
acaacatcaaaggtaactatcacgttatatggttctgatggggagagtgatcctcaccat
ctttctgatccagagggaccagtgtttgagaggggaggtgaagatattttcttactcaca
acacttttcccactgggcgacgtgcagaccattagactttggcatgataactctggagac
aaaccatcttggtacgtgaacagagtgttagtccatgatatggagctagaccaaaaatgg
tatttcctgtgtaactcttggctgtccattgaagttggagactgtgtacttgataaagtg
ttcagtgttgcaacagaggaggatatgaaacaatttagcaatctatttttcatgaagact
tcaaaaggatttagggacgggcatatttggtattctgttttcagtcgctctcccagaagc
tctttcactcgagtgcagagagtgtcctgttgcttctctttgctactttgcaccatgctg
actagtattatgttctggggagtaccgactgatccagctgaacagaaaatggacatgggt
aagatcgaattcacctggcaggaagtaatgattggatttgaaagctcacttctcatgttt
cccatcaacctcctgatagttcagatattcagaaatattcggccaaagccagcaaagaaa
ccagcagaaaaaaaggaaagaacctttatgtctgaaactattaaaaagtctccttcctcc
caagagatcaccagtgcctctctcaccccagaggctgtgatgaaggatattaggagaatt
gcaagttccctgtctaaaacccagaaaataccccttccagatgtggatcttagaaaatcg
acagatataaacaaactcttatcgctagtggaagacataattcgccaacaaaacagagct
ggacaagagttctatgatgagagcaagaaggagagatctcttatactcagcctggggtct
gtagactggcaagaggaattaaggagcccaacaccagaaaagagtttgagagaaaagcca
aggttcagtgatcagaaccgttacttgtacctgcagctacagcatgtagagaagaagttg
gaattccttggaccttatcagtttcagaaccctcagtgttacagccgtgctgtttcccaa
gtgcagcatatgaaaggaatcctggagaatcagctatgttcatcaggcgctgctagtgaa
gtatgctcatcatcagccagtctttctgaggatggaaagaagaacacaagagggctacct
tggtggtttgtttttataggttggctccttgtagctgccaccagtggtgtatctgcattc
tttactatgttgtatgggttacattatggaaaagacagctcaatcaagtggctgatctca
atggcaatctcattttttgagagtctcttcatcacccagcctttaaaggtgttgggcttt
gctgcattttttgccttagttttaaagaaagtggaaccagaagatgaagaagagaccact
attaatggaaacttatctactcctggagacccaaatccactactgggctctcgcagagac
agcaacatctaccagcctcctcctcctacagatatcaccaagatgaagaacaattatatg
aaggagcagaaagtgtttgccttaattcgagaaatattggcctacctggggttcttatgg
atgctcttgctcgtggcctatggacagagagacccaaattcttattacctcaataaacac
attgaaagcagttttacagatggctttgaagatttgtgcagctaccaagaattctttaca
tgggcaaacacaactcttatcaacaatttatatggaagccatccagggtttataactgat
ggcaattctaagcttgttggtggtgccagaatgcgtcagatcaggattaagaaggattct
tgtccagtagcttccgtactgcaaagcacaattgacaactgccgagcaccatactctctt
gatgctgaggaaatgggccactatgatgggagttggaatttttcagctatcaccaatgca
actgatgtaaactcaccatggtattatcaaaaccattccaaactccggggacacccaaca
tggggaaaactggcaacatatagaggaggtggctatgtggcagatttaggaaatgagcga
aaatatgcacacagagttctgcaggatctgttcagcaatatctggctggactcttatact
cgagctgtctttgtggaattcactgtttataacgccaacgtgaatctcttttgcattgtc
aaacttatgttcgaaacaaatgcattaggaacatttttcacacgtgcaaatcttcagagt
gtccgtctttatcctttcactgatgggctacatatctttgtcgtagcagcggaagttatt
tatttcctttttgtcatttactacatggtagtgcaggggaagcgcatgaaggcagagaaa
tggggttacttcaggagcaaatggaacctgctggaattggcgctaattattatcagttgg
agtgccctctctgtgtatgtaaaaagaacaatccttgggacaagagatctacgctattat
caagaacacaagaatgagtttgtaagttttaatgaaacagcagctgcggatgctgcattg
ggctatctgattgcctttttagtgttgttatcaaccattaagttgtggcatctcttgaga
ttgaacccaaaacttaacatgattacagcaactctccggagggcctggggggacatatct
ggatttattaccgtcattgtcatcatgttcctggcctattctatagcttgtaacttgata
ttcggctggaagcttaactcttataaaacagtttttgattcagccaagaccatggtcagc
cttcagctgggtatctttaactatgaagaggtactagactacaatccagtattgggctca
tttctagttggatcatgcatcatatttatgacatttgttgtactgaatctgttcatttca
gtcatccttgtagcattcagtgaagaacagaagcatcaccaggcatcagacgaggaagag
attgttgaactcttgctatggaaaatctgcagctttcttggtctcagacataaaaaggaa
gaagcaagtgccatggagaatgtttcaaaggcctctcctaatgcccaggataactga
DBGET
integrated database retrieval system
