Xenopus tropicalis (tropical clawed frog): 100486430
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Entry
100486430 CDS
T01011
Symbol
siglec1
Name
(RefSeq) sialoadhesin
KO
K06548
sialoadhesin
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
100486430 (siglec1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
xtr04090
]
100486430 (siglec1)
04091 Lectins [BR:
xtr04091
]
100486430 (siglec1)
CD molecules [BR:
xtr04090
]
Proteins
100486430 (siglec1)
Lectins [BR:
xtr04091
]
I-type lectins (Siglecs)
100486430 (siglec1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
Ig_2
I-set
ig
V-set
Ig_4
Ig_5
Izumo-Ig
C1-set
Ig_CD22
Ig_6
C2-set_2
Ig_VEGFR-1-like_5th
Motif
Other DBs
NCBI-GeneID:
100486430
NCBI-ProteinID:
XP_002938446
Xenbase:
XB-GENE-492918
UniProt:
F6SXX7
LinkDB
All DBs
Position
1:14261041..14289599
Genome browser
AA seq
1670 aa
AA seq
DB search
MLLLILLISWNGRGAYSSWDVFVPDSIQGVVGSCLLIPCSFTYPSNVQTPDGIAPIWYKD
RDLKVVYHPTETIEAGFQGRMELLGNPNLNNCTTLLRNLQSSDTGEYFFRFEISNVNRWT
GKKAVTVTVNSRPEMPNAVIPRSIREGESVTFQCTTQYYCPNGSGTLEWHGYHPDRSFLA
RSLQTDTSAVQMGQNLTTSFTWLYHQKQLQCEVSVGDQKETKEVLLVVNHAPKGVKILMA
PSRDNIKQGDSVALTCQYNSSYPAVSGYTWYRNNKVFSREPIVSFPSITRQDFGDFRCEV
QNPEGTGTSEVSRLIVFSANTLVSPSSEVREGEAVTLTCDVPGADPDQIHYSWYKNSLWI
KDGATRSLILYEAAASDAGYYSCKVQNDKGSDSSPPVILHVLYPPRIPKFNSFLETQEGK
LSIIHCSVDSNPPSVLTLYKNGQVLATTNSHGAPTQRLNVISSRNSLKLEIREVVMSDAG
AYSCVATNAIGNSTACLRLTVEIARLVISPSSEIEEGKEVTLTCFATRSSEKGIKYTWYR
NGKWLKETEEDTVTFPRVSSRDAGSYYCLAQSSQGSSSSPPRTLHVFFAPRDLSVSSFVG
SSGRNLGIILCTVDSDPHSELFLYRKETLVASSTMLLHNRRYNISTSPNSLKLEIQDVFL
EDEGAYRCIANNTYGHMMGSLDFTMETAKISVIPTSEVHEAEAVNLTCILNSVSKGNFIY
TWYKNSVLYSEGPEPFLMFQRVSSSDSGSYYCRAWNNATSKSSSSCRLHVFYEPRSMQLK
SYLDTEVGKSAFILCTVDSYPPAQMLLYYQDELVISKKNLSNVNQRYRVSFSSNALRVDI
QDVKLEDEGKYTCTSVNSVGSTNKTIYFKVQLARILVTPSPEVKENEKVVLTCDLTKTQL
EGTMYIWYKNSQRLRESSENTLVFDAVKSNDSGYYHCKAHSSQDSTISPSVSLHVSYAPR
VPNMTSFWESHSGQVGIIECNVDSDPLSSLSLYRGKLLVGLTASSQTLNQRMTVSSSQNS
LKLVIRDVVLEDEGEYVCTASNSIGHSTSAINFTAQTSRILISPSSQVQEGMTVNLTCLV
ASNAPGEVEYSWFQNGKEHPRGSSKTLLFGRVSSEDGGLYYCTVRSDKVTKASPTINLNV
TYAPRNAYIKSFVETQNGEVAIIQCGVDSNPPSQLLLLKEHQVVASLGDSGLHHQRFNPY
FSPNTLRLEIKDLMPTDEGTYIFTAKNVHGTKSVSSHLAVEVARILVNPSPKLNEGQSAT
LTCNVLSTPQPVTSYTWYKNGRWFQEGFPGSLAFEKVLSADAGTYACTGHTANGTWPSLP
ITLYVQYPPRNLSLSSFLEAQGKRQGVISCRVESDPPSQLVLYKGGQVAASFVPQSTNKR
VRLSSSHNALRLEMEEVAPEDQGEYTCQATNSLGAAQTSVHFSLQEAKVVVTPSAKLQEG
GSATLTCQTVSTVAQNASFTWYKNNQWLKDGAEASLLLLKVSDADAGSYHCLAKYGGQES
ISPLVAVTVLYAPKNLLVTSFLEPHGKDQGIILCKLDSVPPSVITLHREGTVLASTMPAQ
PDQGQKFWSFSSHNYLRLEIRDVTAEDSGRYVCTANNTIGSTTSSVLFTINDKEVLVYKV
TVGVTLLCVVLLLAAIIVMWQRKRIRYTMQTDKNSIEMDNNGTTKEELLS
NT seq
5013 nt
NT seq
+upstream
nt +downstream
nt
atgttgctgttaattctactcatctcatggaacggccgaggcgcctactccagctgggat
gtatttgtcccagattccatacaaggagtggtgggttcctgcctgctaataccctgctca
ttcacctaccccagcaatgttcagactcctgacggaattgccccaatatggtacaaggac
agggacttgaaagttgtctaccatcctacggagaccatagaagccggatttcaggggcgc
atggaattgctgggaaaccccaacctgaacaactgtaccaccctcctgagaaacctacag
agtagtgatacgggggagtatttttttaggtttgaaattagtaatgtgaatagatggaca
ggcaagaaagccgtcactgttactgtcaatagcagaccagaaatgcccaacgctgtgatc
cctcggtctataagagaaggggaatctgttacgttccagtgcacgacacagtactactgc
ccaaacgggtcgggcacactggagtggcatgggtaccacccagacagatctttcttggca
cggagcctacagacggacacatctgccgttcagatgggacaaaacctgaccacgagtttc
acttggctgtatcaccagaagcagcttcagtgcgaggtgtcagtcggggatcagaaggaa
accaaggaagttctcctcgttgtcaatcatgcccccaaaggggtaaagatcctcatggcg
ccatcgagagacaacattaagcagggggactcggtggcgctgacgtgccagtacaacagc
tcttacccagcagtgagtggctacacgtggtacaggaacaacaaggtgttttccagggag
ccaatcgtctctttccctagcatcaccagacaggattttggggactttcggtgtgaagtg
cagaacccagagggaactgggacctcggaggtcagccggctaattgtgttctcggcaaac
accttggtgagtccatcgtcggaggtgagagagggcgaggcagtgaccctgacgtgtgac
gttcccggtgctgacccagatcagatccactacagttggtataagaacagtctctggatt
aaggatggagccacgcgctccctgatactctatgaggctgcagcctccgacgcgggatac
tacagctgcaaagtacagaacgacaagggcagcgattcttctccacctgttattttacat
gtcctgtatcctcccagaatcccaaaattcaactcatttttggaaacgcaggaagggaaa
ctgagcatcatacactgctctgtggatagcaacccgccctctgtgctgactctctacaag
aatggccaagtattggccaccaccaactcccacggcgcccccacccagaggctcaatgtc
atctcgtcacgcaactccctgaaactggagatccgtgaagtggtcatgtcggacgcagga
gcgtacagctgcgtggctacaaacgccatcgggaactcaacggcgtgtcttcggctcact
gtggaaattgcccggttggtgatatcgccatcgtcggaaatagaagaggggaaagaggtc
accctcacctgttttgcaacccgcagctctgagaagggaataaaatatacatggtacagg
aacggcaagtggctgaaggagacagaggaggacactgtcacctttccgagagtgtccagt
cgggacgcgggttcttattactgcctggcccagagcagccaaggaagcagcagctcccca
cccaggaccctgcacgtgttctttgcaccaagagatctctctgtgagctcctttgtggga
tcatcgggcagaaatctaggaatcatcctgtgtacggtggacagtgacccacactctgag
ctgttcctctataggaaggagaccttggtggcttccagcacaatgctacttcacaatagg
agatacaatatttcaacttctcccaattccttgaagctggagatccaagatgtgtttctt
gaagatgaaggagcatatcgatgtattgctaataacacttatggtcatatgatgggttcc
ttagacttcaccatggaaacggcaaagatttccgtcattccaacgtctgaggtccatgag
gcggaggctgttaatttaacatgcattctaaacagtgtttcaaaagggaatttcatatat
acctggtataagaacagtgttctgtactctgaagggcccgagcctttcctaatgtttcaa
agggtcagcagttcagattcaggatcctactactgtcgagcctggaataatgcaaccagc
aagagctcatcctcctgcagactccatgttttttatgaaccaaggagcatgcagctcaaa
tcctacctggacacagaggtaggcaaatcagccttcatcctctgcaccgtggatagttac
cccccagcgcagatgttgctctattaccaagatgaactggtgatttccaagaagaacctg
agtaatgtcaatcagcgctacagagtgtccttctccagcaacgccctacgggtggatatc
caagatgtcaagctggaagatgaggggaaatacacctgcacctctgttaattctgttgga
tcaacaaacaagaccatttattttaaagtgcagttggctcggattctagttacaccatct
ccagaggttaaggagaatgagaaggtggtgctcacctgtgacctgaccaagacccaactg
gaaggaacaatgtacatttggtataagaacagtcagaggctccgggaatcatctgaaaac
accttggtgtttgatgcagtaaagagcaatgattcgggctattaccactgcaaagctcac
agctcccaggacagtaccatttctccctctgtgtctctccacgtgtcttatgcccccagg
gttccaaacatgacctcattctgggaatctcacagtggccaggttggcatcatcgaatgc
aacgtggatagtgaccctctgtccagcttatccctttacaggggaaagctgttggttggt
ttaacagcttcttctcaaacgctcaaccagagaatgaccgtatcttcttctcagaactcc
ctgaaactcgtgattagggatgttgtgttggaggatgaaggggagtatgtctgcacagcc
agtaattccattggccattctacatctgccataaatttcacagcacaaacatctcgaatc
ctgatcagtccatcgtcccaagtacaggaaggcatgactgtgaatctgacatgtctggtc
gccagcaatgctcccggggaggtcgaatacagttggttccaaaatggaaaggagcaccca
aggggtagtagcaagactcttctctttggcagggtctccagtgaggatggagggttgtac
tactgcacagtacggagtgacaaagtaacaaaagcctcaccaacaatcaatttgaacgtt
acatatgccccaagaaatgcctacatcaaatcatttgtggagacccaaaatggagaagtg
gccattattcagtgtggggttgacagtaatcctccatcccaattgcttttattgaaagag
caccaggtggtggcttccttgggtgacagcggcctccaccatcaaaggtttaacccttac
ttttccccaaacacattgcgattggagatcaaagaccttatgccaactgatgaaggaacc
tacatctttacagcaaagaatgtccacggcacaaaatcggtgtcctctcatctggctgta
gaagtggctcgtattttggtcaacccatccccaaagctgaacgagggtcagtcggccacc
ttgacctgtaatgtcctgagtacgcctcaaccggtgaccagttatacctggtataagaac
ggcagatggttccaagaaggttttccagggtctcttgcatttgaaaaagtgctcagtgcc
gatgcaggtacctacgcctgtactggccacaccgccaatggcacgtggccctccttacct
atcacgctatacgtgcagtaccccccgcggaacctgtccctctcgtcctttttggaagcg
cagggcaagcgccagggggtaatatcctgcagggtggaaagtgaccctccctcccagctg
gttttatacaaggggggtcaagtggccgcttccttcgtcccccaaagcacaaacaaacgt
gtgagattgtcctcatcccataatgccctgcggctggagatggaggaggtggccccagaa
gaccagggagagtatacctgccaggcaactaactccttgggggccgcacagacctccgtt
cacttctcgctgcaagaagccaaagtggtggtgacgccgtcggccaagctgcaggaaggt
ggatcggccactctcacttgtcagactgtcagcacagtggcccagaatgccagctttacc
tggtataaaaataaccaatggctgaaggacggtgccgaggcatctctgctgctgctgaaa
gtatccgatgccgacgctgggtcgtaccattgccttgccaagtacgggggccaggaaagt
atctccccgctggttgcagtcactgtactctatgctcccaagaacctgctggttacatca
ttcctggaacctcatgggaaggatcaggggattattctgtgcaagttggatagtgtcccc
ccctctgttatcactctgcatagagagggcaccgtcctggccagcaccatgccggcccag
cctgatcaaggtcagaaattctggtcattttcctctcacaactacttgagattggaaata
agagatgtcaccgctgaggattctgggagatacgtctgcactgccaacaatacaatagga
agtactacaagttctgttttatttaccataaatgataaggaggttcttgtgtataaagtc
actgttggcgttacgctcctatgtgttgtcctcctattggccgccatcattgtcatgtgg
cagaggaaaagaatccgatacacaatgcaaacagacaagaactctatagagatggataac
aatggaacaacaaaggaggagctgttatcctga
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