Xenopus tropicalis (tropical clawed frog): 100486658
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Entry
100486658 CDS
T01011
Symbol
crocc
Name
(RefSeq) rootletin
KO
K16469
rootletin
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
xtr03037
]
100486658 (crocc)
Cilium and associated proteins [BR:
xtr03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
100486658 (crocc)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rootletin
PUMA_CC
ERM_helical
CENP-F_leu_zip
Motif
Other DBs
NCBI-GeneID:
100486658
NCBI-ProteinID:
XP_031762449
Xenbase:
XB-GENE-996807
UniProt:
A0A8J1JX31
LinkDB
All DBs
Position
7:131761516..131802653
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AA seq
2037 aa
AA seq
DB search
MGDYAGADGERMKPALPEEGAGLYVRRRVDRCQPQGIVGRNMQINANVSSHWLSLRVYVL
QLEASLLLRGQDPVTNADLDQNLCWNWMGPESCRLEPVGWTEERELEQTLRLEAGEREKD
SLETRSLAQQNVELRRRLEEEQAAYKRKLQAYQEGQQRQAQLVQKLQAKVMQYKKKCGEA
EQQLLERSTELEQERLTSRLELTDTRLRQEEAANNDLEDALIRLEEEQQRSTSLAQVNAM
LREQLDQANSANQALSEDLRKLTADWTKAREELEQRESEWRREEESFNSYFSNEHSRLLS
LWRQVVSLRRLFSEMKSMTERDLSQLHKELSQSCRSLHASCLNVSGSQRMAESTGVVQAE
RQALQLAQLEEQLKDKVRQMIQLQAAYDAEKAELNAKVTELNKTAERLQDESRESERQRL
QEQEQSRSEEQAALLGEEVDALKCEKEVLQEALRELTQAVLSDSDSGLQLSGSDRTSDPT
ESEGLGFSLRGGLSSSLRTSSPLRRSSPHRSSSPRRSLSPAFRESAVSAVHSALQRRQLQ
LQELRGRLDAGQETVGSLRKQLSDNENERRALEQKIQQLQQERDVMGGAKEDAERDVTRL
RNHIEQLNGEKGALEKSLQNLQEELNGQRQENEKLQLANSDLQRQRDLLQEEKEDVCRDR
ERALQNVDRGHKAQEQLEVKLSALRKELVVVKESLHKCSLEREVSEAERVDVSQALSKAE
TRLAELELTLNRQRTEEASLRDALSKMSALNESLAQDKTELSRIIAQLEEERAHLQGQKH
EVEQEKASIRDELVRLEQEKLELDTERFGLDNSLQAMEQNREKLLQEVQALRKERGQLQE
QLGQVSRQRNMLSEDLVQSRRDVELQSECLLRASREKEELMKDKGSLVVQLTASERESRA
LAEEIAVLRTEKEALETALFEAQQQLIHVTSRKEQLEVESQNLRLNKESLQGEIGSVRRQ
MEAEISKLERDKEALSQQLNQMEQEAQVTLRNEQRAHGEDVERLSQEKNELRLELESEKE
ELVHRLTQEREELVARHEMEREEMSEEIAALQQERDESLLQAEFEKQQALSVKESEKASL
SERLTQAQHGLSGLSLELERHKRDSQIRQEQDRGTILALNSELKGLRGQLEEALVLHDRE
LKGLNEKSREVSKHRESAQREVEELKTQLCVVEDARDAVRRELIEAHRRVREGQELLEGH
KKENMELRRALGDEAKEKEAVQKSNEELRGAVRRAESERISLKRSNEEKEQRLSVLEEAR
GASEKEVNDLRSSLRDVERSRLEARRELQDLRRQLKLLDDESIKRSRDMAEVQARLSTYE
QREEESRRDNFNLKQKLMETEAGREAARKELSALQRKVAEVEGEFGVRERELQGSLDEAR
GNEKKLLDNTRNLEIKLQAAQEESGQLGLRLSASEGRVHGLEAELSRLEGLKREVEFKLG
SLHSALRRTLGIGRAGRTPSPAYRGRSGSPKRRFSPLKAFDNTFATTTDGRGSPIPRTGS
PDRSKTPERPLSPTRGEQLVADIDPEVVRAALRDFLQELRDTERERDELRTQLGTSNRHL
AEMEAERDGALTRVQQLQKVLSECEEAKRNVDGKLGGLQTTLILQEETLRRYERERKLAQ
EKAASLERSLQAAEGEQRAAQDKMNKIKANEAKYENERRRLKEVLDASESRNTKLELSRR
GLEGELQRHKLVLADREAEMQEMQQRMEALQRQLSDSEGRVGTLQLCVERLNSTLAKAQE
SETSLKEKVQSLTGALSDSNCTSASSHDKLNQLQKVLTGSEHERRILQERLEAARQAVAE
GKKQNVALMEQNQVLRDEQAEGELQRAELEGQVRQMQEILRQRQESEGASLRNVQKLQEE
REVLQERLCGLQRAVVQLESEKREVERSSMRLEKDKNALKKTLDKVEREKLKTAEDTLRL
SAEKGRLDRSLTTVEQELAEAQRQVQLLEAQMADMEQTHSQSLMETATRHRQELQLEIER
LRNAQIQAERTLDARERAHRQRIRGLEEQISTLKDQLQQELRRCQKVFSQPSLLSGK
NT seq
6114 nt
NT seq
+upstream
nt +downstream
nt
atgggggattatgcaggtgctgatggcgagagaatgaagccggcgctgcccgaggagggg
gccgggctctatgtcaggaggagagtggatcggtgtcagccgcaaggaattgtgggtagg
aatatgcagatcaatgcaaatgtctcttctcattggctctctctccgtgtgtatgtgctg
cagctggaggcgagtctgctcctcaggggacaggatcccgtcaccaatgcagatttggac
cagaacctgtgctggaactggatgggcccagagagctgccgcctggagccggttggctgg
acagaagagagggagctggagcagaccctgcggctggaggccggggagcgggagaaggac
tccctggagacgaggagtctggctcagcagaacgtggagctccggcggaggctggaggag
gaacaagccgcatacaagcgcaagctccaggcctatcaggaagggcagcagcgacaggcg
caactagtgcagaaattacaagcaaaggtgatgcagtacaagaagaagtgtggggaggcg
gagcaacagcttctggaacgatccacagagttggaacaggagcgcctgacaagtcgcctg
gagctgacagatacccggttgcggcaggaggaggcggccaataacgatctggaggatgcg
cttatccgattggaggaggaacagcagagaagtaccagtctggcccaggttaatgccatg
ctaagggagcagctcgaccaggccaactcagccaatcaggccctgagcgaggacctccgc
aagctgacagccgattggacgaaagcccgcgaagagttggagcagcgagaaagtgagtgg
cgacgtgaggaggagtcctttaacagttacttcagtaacgagcacagtcggctgctctca
ctctggcgccaagtggtcagtctgcggcgactcttcagcgaaatgaaaagcatgacagag
cgtgacctctcccagctgcataaggagctgtctcagtcctgccggtccctacacgcttcc
tgcctgaatgtgagtggctcccagcgcatggccgagagtaccggggtggttcaggcggag
agacaagcgctgcaactggcgcagctggaggagcagctgaaggacaaagtgcgccagatg
attcagttgcaggcagcgtatgatgcagagaaggcggagctaaatgccaaggtcactgag
ctcaataagactgcggagagactgcaggatgagagcagagagagcgagaggcagagactg
caggagcaggagcagagccgctcggaggaacaggccgccctattgggcgaggaggtggat
gcgctgaagtgtgagaaggaggtgctgcaggaggcactccgagagctcactcaggccgtg
ctgagtgacagtgacagtggcctccagctctccggcagcgaccgcacctccgaccctaca
gagagtgaggggctagggttcagcctacggggggggctctccagcagcctgcgcacttcc
tcccccctccgccgctcctcaccccaccgcagcagctcccccaggcgcagcttgtccccc
gccttccgagaatccgccgtgtccgccgtgcactcggcattgcaaaggagacagctgcaa
ctgcaggagctgagaggacggctggacgccgggcaggagacagtcggttccctacggaag
cagctgagcgataatgagaatgagcgcagggccctcgagcagaagatccagcagctccag
caggagcgagatgttatgggcggagccaaggaggatgcagagcgtgatgtcacccgactg
cgcaatcacatagagcaactcaacggagagaagggggcgctagagaagagtttgcagaac
ctgcaggaagagctgaatgggcagcgccaagaaaatgagaagctccaattggccaacagt
gacctccagcgccagagagacctcctgcaggaggagaaggaagatgtctgccgagaccga
gagagagccttgcagaatgtggacagggggcacaaggcgcaggagcagctggaggtgaag
ctgtcggccctcaggaaggagctggtggtggtgaaggagtcgctgcacaagtgctccctg
gagagggaggtctctgaggccgagagagtcgatgtctcccaggctctgtccaaggcggag
acccggctggcagaactggagctgacgctgaacagacagaggacggaagaagcgtcgctg
cgagacgcactgtctaaaatgagcgccctgaatgagagtctggcgcaggacaagaccgag
ctgagccgcatcattgcccagctggaggaggagcgggcccacctgcaggggcagaagcat
gaggtggagcaggagaaggcctccatccgggatgagctggtccgattggagcaggagaaa
ctggagctggacacggagcgctttgggctcgacaactccctgcaggccatggagcagaac
cgcgagaagctgctgcaggaggtgcaagctctgcgcaaggagagggggcaactacaggag
cagctggggcaggtctcccggcaacggaacatgctgagcgaggatctagtgcagagccgc
cgggatgtggaactgcagagcgagtgtctgctccgcgcgtcccgggagaaagaggagctg
atgaaagacaagggcagtctggtggtgcagctcactgcctccgagagggagagccgggcc
ctggccgaggaaatagctgtgctcaggacagagaaggaagcgctggagacggccctgttt
gaggcgcagcagcagctgatccatgtgacctcccgcaaggagcaactggaagtcgagagt
cagaacctgcggctgaacaaggagtctctgcaaggggagatcggctctgtgaggcgccag
atggaggccgagatcagtaaattagagcgggataaagaggcgctgagtcagcagctgaac
cagatggagcaggaagcccaagtcactctcaggaacgagcagcgagcccacggggaggat
gtggagcggctcagccaggagaagaatgagttgcgcctggagctggaatcagagaaggag
gagctggtgcatcggctgacgcaggagagggaggagctagtggcgcggcacgagatggag
cgggaagagatgagcgaggagattgcggcgctgcagcaggagagagatgagagcctccta
caggcagaatttgagaagcagcaggcgctgtctgtcaaggagtccgagaaggcgtctctg
agcgagagactgacccaggcccagcacggcctgtctggcctcagcctggaactggaacgg
cacaagcgcgacagccagatccgccaggagcaggaccggggcaccatcctggctctcaac
tccgagctgaagggcctgcgggggcagttggaggaggcactggtgctgcacgacagggag
ctaaagggtctgaacgagaagagcagggaggtgtccaaacaccgagagtctgcccagcgg
gaggtggaggagctgaagacccagctgtgtgtggtggaagacgccagggacgcggtgcgg
cgggagctgattgaggctcacaggcgagtgcgggagggccaggagctgctggagggccac
aagaaggagaacatggagctgagacgggcgctgggggacgaagccaaagagaaggaggcg
gtacagaagtctaacgaggagctgcgaggggccgtgcgcagggcggagagtgagaggatc
agtctgaagcgcagtaacgaggagaaggagcagcggctcagtgtgttagaggaagcgcgc
ggcgcctcggagaaggaggtaaatgacctgcgcagcagcctacgggatgtggaacgctcg
cgcctagaggctcgccgggagttgcaggatctgcgcaggcagctcaaacttctcgatgac
gagagcatcaagcgcagccgggacatggccgaggtgcaggcgcgactgtctacctacgag
cagcgcgaggaagagagtcgccgagacaacttcaacctcaaacagaaactcatggagacg
gaggccggcagggaggcagcgaggaaggagctaagtgccctgcagaggaaagtggcggag
gtggagggcgagtttggggtgcgggagcgggagctgcaggggagcctggatgaggcccgg
gggaatgagaagaagcttctggacaacactcggaaccttgagatcaagctccaggcggct
caggaggagtcggggcagctcgggctgcgtctcagcgccagtgaggggcgggtacatggg
ctggaggcagagctcagccgattggaggggctgaaacgggaggtggagtttaaactgggc
agccttcactccgccctccgcagaaccttgggaattggacgcgctggtcgtactccaagc
cccgcctacagggggcgcagcggctctcccaaaaggcgtttctcacccctcaaggcgttc
gacaacacgttcgccacaaccaccgacgggcgcggcagccccattccccgcacagggagc
cccgaccggagcaagacccccgagcgccccctgtctcccacccgcggggagcagttagtg
gcggatatcgacccggaggtggttagagccgcgctgcgagacttcctgcaggaactgagg
gacacggagagagagcgggatgaactacgcacccagttgggaacctcaaaccgccatttg
gcggagatggaggccgagcgagatggagcgctcacccgagtccaacagctccagaaagtc
ctgtctgagtgcgaggaagcgaaacgcaatgtggacgggaagctcggcggcttgcagaca
actctgattctgcaggaagagacactgcgccggtacgagagagagcgcaagttggcgcag
gagaaagcggccagtctggagcgcagccttcaggcagcagagggcgagcagagagcggcc
caggacaaaatgaacaaaatcaaagccaacgaggccaaatatgagaatgagcgtcggcgc
ctgaaggaggtactggacgcctcggagagccgcaataccaaactggagctgtcccgccgg
gggctggagggggaactgcagcgacacaaactggttctggccgaccgggaagcagagatg
caggaaatgcagcagcgcatggaagccctgcagcgacagctgtcggacagtgagggaagg
gtgggcaccctgcagctgtgtgtggagcggctgaacagcaccctggccaaggctcaggag
agcgagacgtccctgaaggagaaggtgcagagcctgacgggtgccctgtccgacagtaac
tgcacctctgccagctcccacgacaaactcaaccagctgcagaaggtgctgacaggcagc
gagcacgagaggcgcatcctacaggagcggctggaagctgcccggcaggcagtagcggag
ggcaagaagcagaacgtggctctaatggagcagaaccaagtgctgcgagacgaacaggca
gaaggggagctccagcgggcggagctagagggacaggtgcgccagatgcaggagattctg
cgccagcgccaggagagtgagggcgcctccctgaggaacgtgcagaagctgcaggaggag
cgcgaggtgctgcaggagcggctgtgcgggctgcagcgcgcggtggttcagctggagagc
gagaagcgcgaggtggaaaggtcctcaatgcgcctggagaaggacaagaacgcactgaag
aaaacactggacaaggtggagcgggagaagctaaagacagcagaggacaccctgcgatta
tcagcagagaaagggcggctcgaccggtctctaaccacagtggaacaggaactggctgag
gcccagagacaggtgcagctcctagaggcgcagatggcagacatggagcagacgcactcg
cagagcctgatggagacggcgactcggcaccgccaggagctgcaactggagattgagcgg
ctgcgtaacgctcagattcaggcagagcgcacgttggatgcacgagagagagcccaccga
cagcgaatcagaggcctggaggagcagatttccaccctaaaggaccaattacagcaggag
ctgcgccggtgccagaaggttttcagccaaccgtccctcctctcagggaagtga
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integrated database retrieval system
