Xenopus tropicalis (tropical clawed frog): 100486683
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Entry
100486683 CDS
T01011
Symbol
tmc1
Name
(RefSeq) transmembrane channel-like protein 1
KO
K21988
transmembrane channel-like protein
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
xtr02000
]
100486683 (tmc1)
03037 Cilium and associated proteins [BR:
xtr03037
]
100486683 (tmc1)
Transporters [BR:
xtr02000
]
Other transporters
Pores ion channels [TC:
1
]
100486683 (tmc1)
Cilium and associated proteins [BR:
xtr03037
]
Other cilia and associated proteins
Stereociliary proteins
100486683 (tmc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TMC
Motif
Other DBs
NCBI-GeneID:
100486683
NCBI-ProteinID:
XP_002935639
Xenbase:
XB-GENE-987055
UniProt:
A0A8J0QRF1
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All DBs
Position
1:130584135..130620306
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AA seq
877 aa
AA seq
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MGCYLMAIQNIVSDCKTLNGLTPAIGSRAEMPKHKKLVASENDVQIDVDNEEDNADCEEE
EEEQPPKRREKNWRVPDMKPWLAEMTDDENRNANAEEPNENGEGSPGGRTGRKGRKGPGA
AKRKPRDNSKKKKKKDADGSDSDEEAITEEELDKLKEAVEEKKKLIATIRSKPWKMKQKL
EVLKDAQEFVEKFEGALGKGKGKKFYAYKVMMMKKWMKFQRDFENFRTACIPWEMKIKEI
ESHFGSSVASYFIFLRWMYGINLILFGLTFGLVMIPEALMGKPYGSMPRKTVPRPEQPTA
MNFATLWDFSGFAQYSVLFYGYYNSQRTIGWLQFRLPLSYLLVGIGTIAYSFMVVIRTMA
KNANDDGGGDDNSFNFSWKMYTSWDYLIGNPETADNKFASITTSFKESILEEQENRKEEN
IHLVRFLRVFANFLVMCTLAGSGYLIYFVVRRSQQFALEGLENYGWWERNEVNTVMSLLG
MFCPTMFDVISNLENYHPRIALRWQLGRIFALFLGNLYTFLIALMDEINLKREEEKIVQH
NMTFWEANIYNKSYSENSTVPFQVDPSDVPRGPCWETMVGQEFVRLTVSDIMTSYITILT
GDFLQAVFVRFFNYCWCWDLEYGWPSYCEFDISGNVLGLIFNQGMIWMGSFYAPCLPAIN
VFRLHTSMYLQCWAVMCCNVPHARVFKASRSNNFYMAMLLFVLFLAMLPVVYTIVSIPPS
FDCGPFSGKQRMFEVIQETLANDFPAWFAKVFSYASNPGLILPFILLMVMSIYYLNATSK
AYQASNLELKKKLQSQAEENKKRSKKAAEKAAGIQDESAVPFPTPNESDNKKGPKNEDNS
TTNTSGKNLEVPPRIAVTRPPGPTGPPSPRPPAIQRG
NT seq
2634 nt
NT seq
+upstream
nt +downstream
nt
atgggctgttatctgatggccattcagaacatcgtctctgactgcaagaccttgaatggt
ctcacaccagctatcggaagcagagctgagatgcctaaacacaaaaagcttgtggcctct
gaaaatgacgttcaaattgacgtggacaatgaagaggacaatgcagattgtgaggaggaa
gaagaagaacagcctccaaagcgaagggagaaaaactggagagtaccagacatgaaacca
tggctggcagaaatgacagatgatgaaaacagaaatgccaatgcagaggagcccaatgag
aatggggaaggcagccctgggggaaggactggcagaaaaggaaggaagggacctggagca
gccaagagaaagccaagggataattccaagaagaagaaaaagaaagatgcagatggatct
gactctgatgaagaagccatcacagaagaggaattagacaaactaaaggaagccgtagaa
gaaaaaaagaaactcattgccactataagaagcaaaccttggaaaatgaagcaaaaacta
gaagtcctcaaggatgcgcaagagtttgtggaaaaatttgaaggagctttggggaaagga
aaagggaagaagttttacgcatacaaggttatgatgatgaaaaaatggatgaagtttcaa
agggattttgaaaatttcagaactgcctgtataccctgggagatgaaaatcaaggaaatt
gaaagtcattttggttcttcagttgcttcctattttatattcctacgctggatgtatggg
attaatttgatactgtttggactaacctttggcctcgtcatgataccagaggcattaatg
ggaaagccatatggttcaatgccaagaaaaactgttccacggcctgagcagccgactgca
atgaattttgccacgctttgggatttcagtggatttgcacaatattctgttcttttctat
ggatactacaacagtcagagaacaattggatggctacagtttaggctgccactttcttac
ttacttgttggaattggtaccattgcatacagtttcatggttgttatccgaaccatggcc
aaaaatgctaatgatgatggaggtggtgatgacaacagctttaattttagctggaaaatg
tacacgagttgggactatcttattggcaacccagaaacagctgacaataaatttgcatca
attaccacaagcttcaaggaatcgattttggaagaacaggaaaacaggaaagaggaaaat
attcatttagttagattcctcagagtctttgcaaactttcttgtgatgtgcactcttgca
ggcagtggatacttaatttactttgttgtaaggagatcacaacaatttgcattggaaggt
ctagaaaactatggatggtgggaacggaatgaagtgaacacagtcatgtcactgctagga
atgttctgcccaacaatgtttgatgtaattagtaatttggagaattatcacccaagaata
gcactgaggtggcaactaggacgcatatttgctttatttttgggtaacctgtatacattt
cttattgcccttatggatgaaatcaatcttaagagggaagaagagaagattgttcaacat
aatatgacattttgggaggcaaatatttataacaaatcctactctgaaaattcaacagtc
cctttccaggtagatccatcagatgttcctcgaggaccatgttgggaaaccatggtggga
caggaatttgttcggcttacagtttctgatattatgacatcttatattactattctaact
ggcgacttcctacaagctgtatttgtacgcttttttaattactgctggtgctgggatcta
gaatatggatggccatcgtattgcgagttcgacatcagtggcaatgtgctgggcctcatt
ttcaatcaagggatgatctggatggggtcattttacgctccatgcctgcctgctattaat
gtatttcgacttcacacatccatgtacttgcagtgctgggcagtaatgtgctgcaatgtt
ccccatgcacgagtgtttaaggcatcccgctccaataacttctatatggctatgcttctt
tttgttctatttctggccatgttaccagtcgtctataccattgtctccattccaccatcc
tttgactgtggcccattcagtggaaaacaaagaatgtttgaagtcatacaagagactctg
gctaatgacttcccagcctggtttgcaaaagtatttagctatgcatcaaatcccggcctt
attctacctttcatcctccttatggtaatgagtatctattacctgaatgctacatcaaaa
gcataccaagcctcaaacctggaactgaagaaaaagctgcaaagtcaagctgaagaaaac
aaaaaacgaagcaaaaaggcagcagaaaaagcagcagggatacaagatgaatccgctgta
ccattccctacaccaaatgaatcagataacaagaaaggtccaaagaatgaagacaattct
acaacaaacaccagtggaaaaaaccttgaggttccaccacgtattgccgtgacacgtcca
ccaggaccaacaggacctccatctccaagaccaccagctattcaaagaggttaa
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