Xenopus tropicalis (tropical clawed frog): 100487445
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Entry
100487445 CDS
T01011
Symbol
pdzrn4
Name
(RefSeq) PDZ domain-containing RING finger protein 4
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xtr04121
]
100487445 (pdzrn4)
Enzymes [BR:
xtr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
100487445 (pdzrn4)
Ubiquitin system [BR:
xtr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
100487445 (pdzrn4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
MiaE
PDZ_Tricorn
SpoVIF
Motif
Other DBs
NCBI-GeneID:
100487445
NCBI-ProteinID:
XP_002932856
Xenbase:
XB-GENE-982352
UniProt:
F6RN65
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Position
3:complement(65049294..65113899)
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AA seq
774 aa
AA seq
DB search
MGCNLCSFQKREEHYKLLYEVAQVNGKDLSKATHEEAVKAFRNAKEPIVVQVLRRAPMNK
AHGGLQEVQLVNVSTQTDITFEHIMALAKLRPSTPPVPDICPFLLSDSCHSLHPMEHEFY
EGNEYLSSLPTDGDRTEDFEYEEIELCRINSQDRLGLTVCYRTDDEEDTGIYVSEVDPNG
TAARDGRIREGDRILQINGQDIQNREEAVALLSSDECKRITLLVARPELQLDEGWMDDER
NEFLEELNNQKLGEQHNEAMQYKANEVQQQKKREEEDGTTDTATSSSNNHEKDSGVGRTD
ESQRNDESSEVENTAECQTNTSFLMPIDLEPSQETLGSIELHCNESFISGEYIDSDSLGN
PDEDCERFRQLLELKCRIQNRGEYDLYYSSSTIECSRAEHGGVEHELQLLNEELRNIELE
CQSIMQAHQLQNNRKQQKGNHDDEMRNSSTSINLQTGKLSDITDHLERSDKDSSSAYNTA
ESCRSTPLNIDRSPDSSLQRIISITNKKNLRSTIVTNHFSSGINSIENSPSKSTAGGQRI
INEFQDTKLQCSRLSEQKNQSIEEIHYLSPYHSSEYKFGNLPVHARHYQSYMQLIQQNSA
VEYTQSQLNLVTMCKETQRLTEPRMEWKVKIRSDGTRYITKRPVRDKLLKERALKIKEER
SGMTTDDDTMSEMKMGRYWSKEERKQHLMRAKEQRRRREFMMRSRLECLKESPQSGSESK
KEVSIIELSHKKMMKKRNKKILDNWMTIQELMTHGEKSPEGNRVHNAFLSVTTV
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atgggctgcaatctgtgcagttttcagaaaagagaggagcactacaaactgctgtatgaa
gttgcacaggtcaatggaaaggatctttccaaagctacccatgaagaagcagttaaagcc
tttcgtaatgctaaagagccaatcgtagtccaggttttaaggagagcccctatgaacaaa
gctcatggaggcttacaggaagttcagctggtgaatgtcagcacacagacagacattacc
tttgagcacatcatggctttagcaaaactccgaccatccacaccaccagttcctgatatt
tgtcctttcttgctttctgacagctgccattcccttcatccgatggagcatgaattttat
gaaggtaatgagtatctctctagcctgcctactgatggggacagaacagaagactttgag
tatgaggagattgagctgtgccgtattaacagtcaggatagactgggccttaccgtctgc
tatagaacagatgacgaagaagatactggaatctatgtcagtgaggttgatccaaatggt
actgcagcaagagatgggcgtatcagagaaggagacagaattttacaaattaatggccaa
gatatccagaacagagaggaggctgtggcattactctccagtgatgaatgcaagagaatc
actctgctggttgcgagaccagagttacagttggatgaagggtggatggatgatgaaagg
aatgaattcttggaggagttaaacaaccaaaaattgggagaacaacataatgaagcaatg
caatacaaagctaatgaagtgcaacagcaaaaaaaacgagaagaagaagatggcacgaca
gatacagcaacctcttcatctaacaaccatgaaaaagacagtggagtgggacgtaccgat
gaaagtcaacgcaatgatgagagttctgaggtggaaaatacagcagaatgtcaaactaac
acatctttcctgatgccaatagatttagagcccagccaagaaacattaggaagcattgaa
cttcactgcaatgaaagttttatttctggagaatacattgattctgattctctgggcaac
ccagatgaggattgtgaaaggtttcgccaattattagaacttaagtgcaggatacaaaat
agaggggagtatgacctttattattccagtagtaccattgaatgtagcagggcagaacat
ggtggggtagagcatgaactacagcttctaaatgaagaactgagaaatattgaacttgaa
tgccaaagcattatgcaggcacatcaactccaaaataacaggaagcaacaaaaaggtaat
catgatgatgaaatgagaaacagtagcaccagcattaacctgcaaacaggaaaacttagt
gatatcactgaccatcttgaacgatctgataaggacagctccagtgcatataacacagct
gagagctgcaggagtactcctctaaatatagatagatctcctgatagctcacttcagaga
atcattagcataactaacaaaaaaaatctcagaagcactattgtaacaaatcatttttca
tctggaataaacagcattgaaaattctccctccaaatctacagctggtgggcagagaatt
ataaatgagtttcaagatacaaagttacaatgcagtcgattgtcagagcaaaaaaatcaa
agcatagaggaaatacactacctttcaccttaccacagttctgaatataaatttggaaat
ctaccagttcatgcaagacattatcaaagttacatgcaacttatccagcaaaactctgct
gtagaatatacacaaagtcagttaaaccttgtaactatgtgcaaggaaacacaaaggtta
acagagccaaggatggagtggaaagtcaaaatcagaagtgatggaacaaggtacatcaca
aaaaggccagtgcgtgataaacttctaaaagagcgtgccttaaaaatcaaagaggagcgt
agtggtatgactactgatgatgacacaatgagtgaaatgaaaatgggacgttactggagc
aaagaggagaggaagcagcaccttatgagagctaaggaacagaggagaagaagagaattc
atgatgcgtagcaggttggagtgtttaaaagaaagccctcaaagcggcagtgagagcaaa
aaggaagtcagcattattgaactaagtcataaaaaaatgatgaaaaaacggaacaaaaaa
attttggacaattggatgacaatccaagaactaatgacacatggcgaaaagtcccctgaa
ggaaacagagtacacaatgcctttctatcagtcacaaccgtttga
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