Xenopus tropicalis (tropical clawed frog): 100487525
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Entry
100487525 CDS
T01011
Symbol
jmjd1c
Name
(RefSeq) probable JmjC domain-containing histone demethylation protein 2C isoform X1
KO
K11449
jumonji domain-containing protein 1C [EC:1.14.11.-]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
xtr03036
]
100487525 (jmjd1c)
Chromosome and associated proteins [BR:
xtr03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
100487525 (jmjd1c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tudor_KDM3B
PWWP_KDM3B
DUF7030
JmjC
FYVE
C1_2
zf-C5HC2
Motif
Other DBs
NCBI-GeneID:
100487525
NCBI-ProteinID:
XP_031761210
Xenbase:
XB-GENE-1008867
UniProt:
A0A8J1JW00
LinkDB
All DBs
Position
7:complement(18049504..18235442)
Genome browser
AA seq
2528 aa
AA seq
DB search
MALGVRPELVGKRFVCLVLGGGEEPPEIGEIGQIGRWGWRAGVIRAVSHRDSDNPELAVY
VEFDDLEWDKREWVKVYEDFTAFFVEYQLVWAKRKDPSQSQGSKVKHIQWPALAFKPLVG
KGAYNSITAIEFLVERHLEFATEDSAFQPYQDEVDSLNPVLRDNPQLHEEVKAWVKEHKV
QEIFMQGPYSLNGYRVRVYRQDSATQWFTGIITHHDLFTRTMIVMNDQVLEPQNVDPSMV
QMTFLDDVVYSLLKGENIGITSRRRSRSNQNSNTIHGHYTRAQANSPRPAMNSQSSASKQ
GQQHRNARLNKRKGSDSSMPDEDRIKEERYDGTGRAENLKRNKHFHSKRRKPEEDEKKLI
LKRLRTDNISDFSESSDSENSNKRIIDSSSEQNSENELKSKNTSKINGDEGKSQSSDGAE
EQTLIDRHSPWDEIQDDKKEAERMKSAESQLQEDKPPFLLSEQTALYEQNPNNPHVLDSL
AEKSNTTELLQMEPLVSKPPTPKNAIVLNNENNANEAVQESGAGTFGSQPVPKVELQSGE
LKPSFGSIGFSDSKRQDTEQAWNEVNNKGDLGVLKNCQSAKDAHEREKIQHGSVIGSTSL
TDEQKRLQKQTLDAMKAKPHIPEVSSKIKYNASPDVIKSRSVHSPDPVKQKMNYHNSQTS
GIVRSSSKLDCDPHRSSFHPVAARVSAIESTKSPLIIDKNEHFTVYRDPALVGPETAANH
ISSYLHQHNFALHSPAHRTCLPPNSHHPALTGNPHLLTSSSNQASIAAINTHPLGSASHH
PVHHPHLLPTVLPGMTPGSLLGGHPQLETAHASSLSHLALAHQQQQQMLQHQSPHLLGQA
HPSASYNQLGLYPIIWQYPNGSHAYSGLGLPSSKWVHAENHVGAEASIRRNTASPWLHQP
TPVTSAESLLIGHLPVRPSSADAHRPIKLSVHSSPPLSKPAAEHHKEEIDKKAFSEPLRS
IATVKSEHDHGRTHAGKDSHMSHIHRHYMEPVLSHSKLQRVPQDSGERPSKYKEEHRRIL
QENTEASPFPMKVKAHENERDSYPRVTSIVSSSPKSHVVKQENNIDRHITELYKLKNSVS
QSLPQSNYFTTLSNSVVNDPPRSFASKEVVNLYPEKQNCTPSSASSTTLNSYMSSLSKPP
PLIKHQPEEVSAGKLSEPLSQQVTSHTITSYRGDSRSPTQLSISSTNTLRSMPALHRAPV
FHPPIHHSLERKDASYSNLSPPTLTPVQPVSTGSKIQELQKPPTLVPEPKEGSSTYKKTP
EKSIQDGWKANEKQNISKGVWIPEKSNGKVQAATASVIVRPSSSAKYDPIPMAQNLSKER
VGDKPLAGVNQTECLKPLEPRETARITQPPVCSDGALVNSGKGSPAPLHVANSVAPGSSV
MCSTKTDVTTSAPTTTSVSSSSGSEVTYSLSNYSVSACAVIECNTSKTGNPTSAQTPENQ
VINPAPVTPASGKATSAIQPNAAYSSSSDFIHLKKHKAALAAAQLKSTNANETEPSAVKN
PKLPASSSPDGNVACSSANALSTLGNGPVAQPNYHTKLKKAWLTRHSEEDKNINKPESAG
CTVVSEIIKPCTVNLIASTSEELQNNLDLRAQDDKSPKEDRLTRRRVKRTYESGSESEDS
DESESRSGPRLKRQPKPTYKKKQNDMQRRKGDTDKEEECKPNGILSRSAKEKSKLKLQSS
SGNTGIPRSVLKDWRKVKKLKQTGESFLQDDSCCEIGPNLQKCRECRLIRTKKGEESTHS
PVFCRFYYFRRLSFSKNGVVRIDGFSSPDQYDDEALSLWSHEHYEDDELDLDTIKYILAY
IGDKFCQLGTSEKAAVSWVKKDAKIAWKRAVRGVREMCDACEATLFNIHWVCQKCGFVVC
LDCYKAKERKISRDKELYTWMKCVKGQPHDYKHLMPTQIIPSSVLTDLLEAMHHLRDRFG
IKSHCHCASKPCPPAPKYPAMNGVSQVLQNVLNHSNKISLCLPESPHQSSPQKPETNGNA
SPGSDSSTDSKLTSSESHSSLHWLADLAEQKSREEKKENKECPGGKHIKEERDQEVSETV
NCKSSPTSHSNEQGSTLRDLLTTTAGKLRLGSTDAGIAFAPVYSASNPCNKGGRSMPNIL
DDIIASVVENKIPATKTPKPIVQSEPKEEIVEVPLEEPETEHQEIPHSWICDRHILWLKD
HKHSRNWKMFQECWKQGKTVVVSGTHKRMNANLWKLEAISSDFGDHQGDLLNCKEGIVSS
GNVTDFWEGFEDVSKRQKVKNGETVLLKLKDQPSGEDFKNMMLARHEEFFKMLPVPEYCN
PDGKFNLASHMPSFFVRPDLGPRMCSAYGVIATKDQDTGTTNLHIEVSDLVNILVYVGAA
KGLGVMPKSGVLKKFEEEELDEHLRKRLKDSGEVPGSLWHIYETRDADKIREFLHKAAKE
QCLEILPDHDPIRDQNWYLSKKLRQSLLEDYGVKSYTLVQFLGDAVILPAGAIYQVQNFH
SCIQVTQDFVSPEHLVQSFHLTQELRHSKEEINYDDKLQVKNILYHSVKEMVRALKIHEE
DMEEMEES
NT seq
7587 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgggagtgcggccggagctcgtagggaaacgcttcgtctgcttggtccttgga
ggaggagaggagccgccggagatcggggagatcgggcagattggtcgctggggctggaga
gccggggttatacgagcggtgtctcacagggacagcgacaacccagaactggcggtgtat
gtggaatttgatgacctggaatgggataaacgagagtgggtgaaagtgtatgaagatttt
acagccttttttgtggagtaccagctggtctgggctaagcgaaaagaccccagccagtct
cagggatcaaaggtcaagcacatccagtggcctgcattggcatttaagcccctggttgga
aaaggtgcatataattcaattactgcaatagaattcttagtagagagacacctggagttt
gcaactgaagatagtgcctttcagccctatcaggatgaagtagatagtctcaacccagtt
ctcagggataaccctcagcttcacgaagaggtgaaagcctgggtcaaagaacataaggtt
caggagatttttatgcaaggtccatattccttaaacggctatcgagtgagggtatacaga
caagactctgccacccagtggttcactggcataatcacccaccatgacctattcacccgc
actatgattgttatgaatgaccaggtactagagccacagaatgttgacccttctatggtt
cagatgacctttctagatgatgttgtttactctttgttgaaaggggaaaatattggtatc
acatctcgccggaggtctcgctccaatcagaacagcaacacaattcatggtcattacacg
cgtgcacaagccaatagtcccaggccagcaatgaactcgcaaagctccgcatccaagcaa
ggtcagcagcacagaaacgcccgcttaaacaagaggaaaggatcggacagcagcatgcct
gatgaagataggattaaagaagagagatacgacggcacaggtagagcagaaaacctgaaa
aggaacaaacatttccacagcaaaaggaggaaacccgaggaggatgaaaagaaattaatt
ttgaaaaggctgcgcacggacaatatttccgacttctcggagagcagcgactcagaaaat
tcaaataaaaggataatagattcttcctctgagcagaattccgagaacgagctgaaaagc
aagaacacttcaaagataaacggagacgaaggaaaatcccaaagtagcgacggggctgag
gaacagacactaatagataggcattctccctgggatgaaatacaggacgataaaaaggaa
gcggagagaatgaagtcagctgagtcccagctgcaggaagataaacctccgtttcttcta
tcggagcagacagcactttatgagcagaatcccaataacccgcatgttctagatagccta
gcggagaagagcaacactacggaattgttacaaatggagccgctcgtcagcaagcccccc
acgccaaaaaatgccattgtcttaaataacgaaaacaatgccaacgaggcagtccaagaa
agcggcgccggaacgttcggctcgcagcccgttcccaaggtggagttacaaagcggagaa
ttaaagccttcgtttggaagcatcggtttttccgattcgaagaggcaggatacggaacaa
gcgtggaacgaggtgaacaacaaaggagacttgggcgtgttaaagaattgccagtcagcc
aaggacgcccacgagagagagaagatccagcacggctctgtcatcggtagcacttcccta
acagatgagcagaagaggcttcagaagcaaaccctggacgccatgaaggccaaacctcac
atcccagaggtttccagcaaaataaagtataacgcctcgccggacgttatcaagtcgcgg
tccgtccactccccagaccccgtgaagcagaaaatgaactatcacaatagtcagacgtct
ggcattgtaaggtcctccagcaaattggattgcgacccacacaggtccagttttcacccg
gtggcagccagagtgagcgccatcgagtctacgaaaagtcctcttatcatagacaaaaac
gaacactttaccgtttacagggacccagcacttgttggaccagagactgcagcgaatcac
atatcttcttatttgcaccagcataactttgctcttcattctccagctcatcgaacatgt
ttacctccaaacagccaccacccggcactaacaggaaaccctcacctactcacgtcctcc
tcaaaccaagcatctatagctgctattaatactcacccgcttggcagtgcatcccatcat
ccagttcatcatcctcatttactacctactgtgttacctggcatgaccccaggttcctta
ctaggtggccacccacagctagagactgcacatgccagcagccttagtcatttggcattg
gcacatcaacagcagcagcaaatgttacagcatcagtcgccacaccttctcggccaagct
cacccgtcggcttcttacaaccagctgggcctttatcctatcatctggcagtatccaaat
ggcagccatgcttattccggtcttggcctgccatcgtcaaaatgggttcatgcagagaat
catgtgggtgctgaagcctcaataagacggaacaccgccagcccctggctgcaccaaccc
acccctgtgacttcagctgagagtctcctaatcggccacttaccggtgcgcccatcaagc
gcagacgcacaccgacccatcaagctctctgtgcactccagcccgcctttgtccaaacca
gcagcagagcaccacaaggaagagatcgacaagaaagctttcagtgaacccttacgctca
atagcaacagtaaagtctgaacacgatcatggccggactcatgctggcaaggacagccac
atgagccacatacatagacattacatggaacctgttctgagccactcaaagctgcagagg
gtcccgcaggattccggagaaaggccaagtaaatataaggaggaacacaggcggatactt
caagaaaatacagaagcgtcaccctttccgatgaaggtgaaagcacatgagaacgagcgt
gacagttatcccagagtaacgtccatcgtctcctccagccctaaaagccacgtggtgaaa
caggagaacaacattgaccgccatatcactgagctttataaactgaagaactcagtctct
cagagtttaccgcaaagtaactattttaccaccttatcgaacagtgtggtcaatgatccg
ccgcggtcgtttgcctcgaaggaagtggtgaacttgtaccctgaaaagcagaattgcacc
ccatcctccgccagttccactacgctcaattcgtacatgtcgtccctctccaagccgccg
ccgcttatcaagcaccagcctgaggaggtgtcggcgggcaagctaagcgagccactttct
cagcaagtgacaagccacaccatcacttcctacagaggagacagccggagtcccacccag
ctatccatttcatctactaacaccctccgtagcatgcctgccttgcacagagcccctgtt
tttcacccgcccatccatcacagcttggagagaaaggacgcaagctacagtaacctttca
ccgcccaccttaactccggtgcagccagtaagcacaggcagcaaaattcaagagcttcag
aagcctccaactctagttcctgagcccaaagaaggttccagcacgtacaagaagacccca
gagaaaagcatccaggatgggtggaaagcgaacgagaagcagaacatcagcaaaggggtg
tggattccagagaagagtaacggcaaggtgcaagctgcgactgcctctgtcattgtgcgc
ccgtcatcgagtgcaaagtacgatcccattccaatggcgcagaacctctcaaaggagaga
gttggggataaacccttagctggggtaaatcagactgagtgcttaaagcctctggaaccc
cgagagacagcgaggatcacccagccgcctgtctgctccgacggtgctcttgtcaattcg
ggtaagggatctcctgctcccttgcacgtcgccaactctgttgcaccaggatccagtgtt
atgtgcagcacgaaaaccgacgtgaccacctctgctcccacgaccacgagtgtttccagc
agcagcggatcggaggtgacctattccctgtccaactactctgtgtcagcttgtgccgta
atagaatgtaacacctccaagactggaaacccaaccagcgcccaaaccccagagaaccag
gtcatcaacccagctccagttactccagcgagtggcaaggctacaagtgcaattcaaccc
aatgctgcctattctagttccagtgacttcatccacctgaaaaagcacaaggcagcgttg
gcggcagctcagctgaaaagcaccaatgccaatgagacggagcccagtgctgtgaaaaat
cccaaattgcctgcatcgagttccccggatggtaacgtggcctgcagttcagccaatgca
ttgagcactttaggcaacgggcctgttgcccagcctaactaccacacaaaattaaagaag
gcctggctcacaaggcactcagaagaagataaaaacattaacaagcccgagagcgcaggc
tgcactgtggtctcggaaatcattaagccttgcactgtcaatctcatagcctcaacctcc
gaggaacttcagaataaccttgacctccgagcgcaggacgataaatctcccaaagaggat
aggctgaccaggaggagagtcaaaaggacttacgaatctggttcggagagcgaggactct
gacgagagcgagagcaggtcagggccgaggctcaaacgccagccgaagccgacgtacaaa
aagaagcaaaacgatatgcagaggcggaaaggcgacacagacaaagaggaggagtgcaaa
cccaatggcattctcagccgcagcgccaaggagaagagcaaactaaagctgcagagcagc
agcggcaacacaggcatccctcgctcagtattaaaagactggcggaaggtgaagaagctg
aagcagacgggcgaatccttcctgcaggacgactcctgctgcgagattgggcccaaccta
cagaagtgtcgggagtgtcggctcattcgcaccaagaaaggggaggaatccacccactcg
cccgtgttttgtagattctattacttccgaaggttatcattcagtaaaaacggggtggta
cgaatagatgggttctcctctccggatcagtacgacgacgaagccctcagcctgtggtca
catgagcattatgaagatgatgagttggacctggacacgatcaaatatatcttggcttat
attggggataagttctgccagctcggcacctcggagaaagccgctgtgtcctgggtgaaa
aaggatgcaaaaatcgcctggaagcgggcggtgcgcggcgtgcgggaaatgtgcgacgcc
tgtgaggccaccttgttcaacattcactgggtctgccagaagtgcggctttgtggtctgc
ctggattgctacaaggcaaaggaaaggaaaatatccagagataaagagctgtacacttgg
atgaaatgcgtgaaggggcagccgcacgattacaagcacctcatgcccacccagattatc
cctagttcagttctaacggatcttctggaggccatgcatcatctcagagatagatttgga
atcaaatcccactgtcactgtgccagcaagccgtgccccccggcgcccaagtacccggcc
atgaatggcgtctcacaggtattgcagaacgtcctcaaccacagtaacaagatatccctg
tgtttgcctgagtctccgcatcagagctcgccccaaaagcccgaaaccaacggcaacgcg
agcccgggaagcgactccagcaccgacagcaagctcacctcctccgagtcccactcctct
ctgcactggctggcagacttggcggaacagaagtccagggaagaaaagaaagagaacaag
gagtgtcccggtgggaaacatatcaaggaagagcgagaccaagaggtttctgagactgta
aactgcaagtcgtccccgacgtcccatagtaacgagcagggttccacgttacgcgacttg
cttaccaccaccgctgggaagctgcgccttggctctacggacgctggcattgcatttgca
cctgtctattcagcctcaaatccatgcaataaagggggccggtccatgccgaacatcttg
gatgacatcattgcgtcagttgttgaaaacaaaattccagccaccaagactcccaaaccc
attgtccagtccgagccaaaggaggaaatcgtagaggtgcccctggaggagccggagacc
gagcaccaggagatcccccattcctggatctgcgataggcacattctgtggctaaaggat
cacaaacacagccgcaactggaagatgttccaagaatgctggaaacagggcaagaccgtc
gtggtgtctgggacgcacaaaagaatgaacgccaatctgtggaaattggaggcaatcagc
agtgattttggggatcatcaaggagacctccttaactgcaaagaaggcattgtgtcgagc
ggcaacgtcactgacttctgggaaggatttgaggatgtttccaagaggcagaaagtaaag
aatggggagaccgtcctcctgaaactgaaagatcagccctcgggggaggacttcaagaac
atgatgctggcaaggcacgaagagttctttaaaatgctccctgtaccggaatactgcaac
cccgacgggaagttcaacctcgcctctcacatgccgtcattctttgtgcgtccggatttg
ggcccccgaatgtgcagcgcatatggagtcatagcaacgaaggatcaagacacgggcacg
acgaaccttcacattgaagtgtcagacctggtcaatatcctcgtctatgtgggcgctgcc
aagggccttggcgtcatgcccaaatctggggtcttaaagaagtttgaggaggaagaattg
gacgaacatttaaggaagaggctgaaggactccggggaggtccctggctcactatggcac
atatacgagaccagagacgccgacaaaatacgagagtttttgcacaaggcagcaaaagag
cagtgtctggagatactacctgatcacgacccaatcagagaccagaactggtaccttagc
aagaaactccgccaaagccttctggaggattatggggtgaaaagctacacactggtccag
ttccttggggatgccgtcatattgcccgctggagctatctatcaggtgcagaattttcac
agctgcatccaagtgactcaggactttgtgtctccggaacatctcgttcagtcgttccat
ttaacgcaggaacttcggcattctaaggaagaaatcaattacgatgataaattgcaggtt
aaaaatatcctataccattcagtgaaggaaatggtaagagcattgaagattcacgaggaa
gatatggaagagatggaggagagctaa
DBGET
integrated database retrieval system
