Xenopus tropicalis (tropical clawed frog): 100487601
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Entry
100487601 CDS
T01011
Symbol
shh
Name
(RefSeq) sonic hedgehog protein
KO
K11988
sonic hedgehog
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
100487601 (shh)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
xtr01002
]
100487601 (shh)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
xtr00536
]
100487601 (shh)
Peptidases and inhibitors [BR:
xtr01002
]
Cysteine peptidases
Family C46: hedgehog family
100487601 (shh)
Glycosaminoglycan binding proteins [BR:
xtr00536
]
Heparan sulfate / Heparin
Morphogens
100487601 (shh)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HH_signal
Hint
Peptidase_M15_3
DUF7764
Intein_splicing
Ribosomal_S6e
Motif
Other DBs
NCBI-GeneID:
100487601
NCBI-ProteinID:
XP_031759766
Xenbase:
XB-GENE-488039
UniProt:
A0A803JKD3
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Position
6:complement(17002882..17023309)
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AA seq
416 aa
AA seq
DB search
MLVVTRILLLGFICTLVAPPGLACGPGRGIGKRRHPKKLTPLAYKQFIPNVAEKTLGASG
RYEGKITRNSDRFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGV
KLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYFESKAH
IHCSVKAENSVAAKSGGCFPGSARVMVEPGGTKAVRELRPGDRVLSSDPQGNLIYSDFLL
FIDKEHDVKKLYYVIQTSQTRIRMTAAHLLFVAQSNGTGSFKSVFASNVRPGDVIYSADR
RDMTLREAMVEKVDLEEDIGAFAPVTAQGTVVIDEVLASCYAVIEEHRWAHLAFAPLRSA
ISLSSYLFPRDSSPSLESYEQVEGIHWYSRLLYHLGTWLLDSKSLHPLGMAATKSS
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgctggttgtgactcgaattctgctgctgggcttcatctgtactctggtggccccccct
gggctggcatgtggacctggcagaggcattggcaaaaggaggcaccctaaaaaactcacc
cctttagcctacaagcagttcatccccaacgtggctgagaagaccctgggggccagtggt
cgatacgaaggaaagattacaaggaactcggatcgatttaaagagttaacccccaattat
aaccctgatattatttttaaagacgaggagaacaccggagcagaccgactcatgactcag
agatgtaaggacaagctgaacgccttggcgatctcagtgatgaaccagtggccgggggtg
aagctgcgggtcacggagggttgggatgaggatgggcaccactcggaggagtcgctgcat
tacgaggggagagcagtggacattaccacgtcggaccgggaccgcagtaaatacgggatg
ctggccaggctggcggtggaagccgggttcgactgggtctattttgagtccaaggctcac
atccactgctcggtcaaagcagagaactcggtggcggccaagtcgggggggtgcttcccg
ggcagtgccagggtgatggtggaaccgggcggcaccaaagcggtgagagagctgcgcccc
ggggaccgggtcctctcctccgacccccaagggaatctcatctacagcgatttcctcctg
ttcatagacaaggagcatgacgtcaagaagctctattacgtcatccagacgtctcagacc
cgaatccggatgacggcggcccacctgcttttcgtggcccagagcaacggaaccgggtct
ttcaagtctgtgtttgccagcaacgtccgacctggggatgtcatttatagcgcagatcgg
agggatatgaccttgagggaggcgatggtggagaaggttgaccttgaggaggacattggg
gcttttgcccccgtaactgcccaggggactgtggttatagacgaggtgttggcctcctgc
tatgcagtcattgaggagcataggtgggcacacctggcattcgccccactgaggtcggcc
attagcctttcatcctatcttttccccagagactccagtccttcgcttgaatcgtacgag
caagttgaaggcattcactggtactcccgactactttatcacctagggacttggctattg
gacagtaagtccctgcaccccctgggcatggcggcaacgaaatccagttga
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