Xenopus tropicalis (tropical clawed frog): 100487671
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Entry
100487671 CDS
T01011
Symbol
rai1
Name
(RefSeq) retinoic acid-induced protein 1
KO
K19749
retinoic acid-induced protein 1
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xtr03000
]
100487671 (rai1)
Transcription factors [BR:
xtr03000
]
Eukaryotic type
Zinc finger
Other zinc fingers
100487671 (rai1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-HC5HC2H
zf-HC5HC2H_2
zf-ANAPC11
Motif
Other DBs
NCBI-GeneID:
100487671
NCBI-ProteinID:
XP_004918129
Xenbase:
XB-GENE-987626
UniProt:
A0A6I8SY06
LinkDB
All DBs
Position
9:complement(15398694..15518230)
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AA seq
1820 aa
AA seq
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MQSFRERCGFHGNQQNYQPTSQESSRLENYRHQSQPALNCERHRQVTKSYYAHTSYQGYE
NSVGEKYPRGDKQIAVQQLQGRVSFASFSEGNVYPGHYTGEDGLQNWGQSQTLSGAKYEE
NLIKKTPGEERGYQDPPGQNPFRSHSLHHQQQQALPYAKIPRQKVQNNVQSSPLSFSQAS
HFNQSFPTSTYSTVTGGSQVSHTYKSCTAPSNPQHERTMAAAGQRVQTMHGYQSTRMTPY
EQPQLHHAQETLHYQNMAKYQHYSQQNQTYCQSETPSRTPEQYYQPFSPSASHSPARSVG
RSPSYSSTPSPLMPNLENFQYNQQQQQQQHNTGTFPLSMTDHSHYMPLLNPSPTGTSSPE
SQSKSLQNDKIPETLLSDLSLQSLTALTSQVENISNTVQQLLLSKSGVPQKKVMKTSPRT
PEQIKGQHCSPESNTYSAEQIGTPLSDALGTPQSVHTEIPDTDYLSGSEDQLERNYLYCG
PGQSPARANNPKMKPESLSTCSVTSPDNMSTKSDDSFQSIQASLPLETFAKLVSSERECP
HLLVNALSQEELSTEIIALQDAIDNEKAEKAWVDSPVLSNHSPKSPLHLENSSACVETAI
QTWSGQENVEEFPEDLKKSMTEEAKPNQDSCYSDKSFEREEIPPEPTEATKTIDNSGSLC
SDKNILAATSSASYTSSSDTSASTTCPKTMDPFGWPDKNMTESCLRWKDLELSLHESDLE
KDLFQVKDNKIDCQLDVPDVETPLENDSGEEFNKEGAGDLAYTDIGKTDNEKWLEDTRDC
YTEEDFQDIPDIPSQKESNLEPEDYSSLCDFSDRKSFIYDTSPSKPLKDMEMVSSINTPE
SVENPSLEEKENSAPSQLSGHSIILLGPAVATESKVKSWFESTITHIKTVGDIKEKNEED
AEACALEPLTLPDRDMKDLKVQDNQLDVKAEEPLERKPLRSKKNPCRAVEAVESNKVAQN
PVGETAKADNEKAQEGAANTMVIVPVAKAPVAEAKPARMCTRSSTAKADPQVNGGAVGPP
PLHQEKTNKKGEFSVKERTSFKPGRRGGKAVMKLVSSCDRKNFMLQSKSQSKLGSQKAKE
NSIKLLKDEKSMILRSRSKKQELFQTKKRKGKRGMSVVIKKRACLKKILANNCTVPDTYK
LIPKVKRMKLANAGVPINAKVSDRCLHSLKRKANFISPVPAKKKNLILRSKNVKEEKSEP
TPHLFKKIRPTKKEKVKLTIAAKKTCKVILKTPAVRVTPEVRIKVPSRSSYAGAVKTKVL
PPRKGRGLKLEAIVQKITSPNQKKQGIPGACFYNSVAAGDNSLNALTPGKELRELSLVSA
DSETRTVSQNNALTSEPDLHSLSCRGSNNRSLKGKPLHSKKLTSSSLHCTTTHRGTEQEG
SYIKAKRLSTVPKRRIRRGRSKGAVDRPKNTSKRQIGASPSALLTSRDKALSESVHQTNK
CKKPQLKEAPSVPSGVEESSSQVRARKKTKYASFNGYTKRQRKCAPRNKPAKQTTGRKCT
ARRKSVPLVSPKEPEIKLKYVSNKPMRSESRVRPFSPYIQVENKNEYTTTCTVINTAVEE
NRLLKERSIMHSVPHSASFASSGTLPLSSRMQLGPLVCKAVPSGCLVCCLCRNPANFKDL
GDLCGPYYPMDSLPNKKGRPKDKFRIAEAPAEKAAKVSDSVCTVGSGRAPCSDVGELDPS
KHNNLRTSARGMLRKLPSCYCCSKTVEIAETEKPRRHQCNKALEPPTPELETQEHWVHEA
CAVWTSGVYLVAGKLYGINEAIQMAAAGLCPKCQRPGATVGCSHKGCEQSYHITCAVEAG
CLLSEENFSLRCPKHKKHLV
NT seq
5463 nt
NT seq
+upstream
nt +downstream
nt
atgcagtcttttcgggaaaggtgtggtttccatggcaaccagcagaactaccaaccaaca
tcacaggagtcatcacgcctggagaattaccgacatcaaagtcagccggcactcaactgc
gagcggcacaggcaggtgaccaagagctactatgcccacacgtcctaccaaggctacgaa
aacagcgtgggggagaagtaccccaggggcgacaagcagatcgccgttcagcagctgcaa
ggaagggtgtcttttgccagcttctcggagggtaacgtgtaccccggacattatacaggg
gaggacggactacagaactgggggcaatctcagactttgagtggggccaaatacgaggaa
aacctaataaaaaagacacccggggaagaaagggggtatcaggatccgcccgggcagaac
ccgttccgctcacattcgctgcatcaccagcagcaacaggccctgccctatgccaagatt
cccaggcagaaagttcagaacaatgttcagtcctctcctctatccttttcccaagcctcc
cactttaaccagagtttcccaacgtcaacctattccaccgtcacagggggaagccaagtc
tcccacacttataagagctgcaccgccccctccaaccctcagcatgagcgcaccatggct
gcggcgggtcagcgggtgcagacgatgcacggctaccagtcgactcgaatgactccttac
gagcagccgcagctccaccatgctcaggagacactacactaccaaaatatggccaaatac
caacactacagtcaacagaatcaaacttactgccaatcagaaactcccagccgaactcca
gaacaatattatcagccttttagtcccagtgccagccattcaccagctcggtcagtgggc
aggtccccatcttacagctctactccctctcctctgatgccaaaccttgagaactttcag
tataaccaacagcagcagcaacaacagcataacactggcacatttcctttaagcatgact
gaccacagtcattatatgcctcttctaaatccgtcacccacaggaacgtccagtcctgag
tcacagagtaaaagtctgcaaaatgacaaaataccagagaccttgctttctgatcttagc
ctgcagagcctcaccgctctgacgtcccaagtggaaaacatctccaacaccgtgcaacag
ctgcttctttccaaaagtggagttcctcagaagaaagtgatgaagacatccccgaggacc
cctgagcaaataaaggggcaacactgcagcccagaaagcaacacatactctgctgagcag
attggaactcctctatccgacgcacttggtacccctcagtctgtgcacaccgagattcca
gatacagactacctcagtggctcagaggaccaacttgaaagaaactatttgtactgcggt
ccaggccaaagcccggcgagggccaacaatcccaaaatgaaaccagaatctctctctact
tgctctgtaacttcacccgataatatgtctacaaagtcagatgattcttttcaaagtatt
caggccagccttcctctggagacctttgctaaactggtgagcagtgagagggaatgccca
catttactggtcaatgccctttcccaggaggagctatccactgaaattatcgcactccaa
gacgctattgataacgagaaagcggagaaggcctgggtggactcccctgtcctcagtaac
cactccccaaaatctcctttacatctcgaaaacagctcagcctgtgtagagactgcaata
caaacctggtcaggccaagagaatgtggaggaatttcctgaagatctaaagaaaagcatg
acagaagaggccaaaccaaaccaagactcgtgttacagcgacaagtcttttgaacgggag
gaaatacccccagagccaactgaagcaactaaaactattgacaattctggcagtttgtgt
tctgataagaatattctagctgcaacatctagtgccagttataccagctcctctgataca
tctgcaagtacaacttgtccaaagacaatggatccctttggttggccggataaaaacatg
actgaatcatgcctaaggtggaaagacttggagctcagtctgcacgaatcagaccttgaa
aaagatttatttcaggtcaaggataataaaattgactgtcagcttgatgttcccgacgtt
gaaactcctctagaaaatgactccggtgaagagtttaataaggagggagcgggagacttg
gcctacacggacattggtaagactgacaacgagaagtggcttgaagatactagagactgt
tatactgaagaagactttcaagacattcctgatatcccatcccaaaaggaatcaaatctg
gagccagaagattattcctcattgtgtgatttttccgatagaaaatcttttatttacgac
acctcaccttcaaaaccattaaaagacatggaaatggtctcttccattaataccccagag
tcagtggaaaacccaagccttgaggaaaaagaaaattcagctccatctcagctctctggt
cactccatcatcctgcttggcccagctgtggccacagagtctaaagtgaaaagttggttc
gaatccaccataacacacattaaaactgtgggggacataaaagaaaagaatgaagaagac
gccgaagcctgtgcacttgaacctctaaccctcccagacagagatatgaaagacctgaaa
gtgcaggataatcagctggatgtgaaagctgaagagccactcgagaggaagcctcttcgc
agtaaaaagaatccatgcagagcagtagaagcggttgagtctaacaaagtggctcagaac
cctgtcggtgaaacagctaaggcagataatgagaaagcacaagagggggctgcaaataca
atggtcattgttccggtggccaaggctccagtggcagaagcaaagccggcaagaatgtgt
acccgatcttcaactgcaaaggcggatcctcaggtgaatggaggagcagtggggcctcca
ccgctccatcaagagaaaaccaataaaaagggtgagttcagtgtaaaggaaagaacctct
tttaaacccgggagaagaggtggaaaagctgtgatgaaactggtgtcttcttgtgacaga
aaaaacttcatgcttcaaagcaagtcacagagcaagctcggcagtcagaaagctaaagaa
aacagcattaagcttctcaaggatgaaaagtctatgatcctgaggtctcgcagcaagaag
caggaactcttccaaaccaaaaagaggaaaggaaagagaggaatgagcgtggttattaaa
aagcgggcatgcttgaagaaaatcctggctaacaactgcacagttccggacacgtacaag
ttgattccgaaggtaaaacgcatgaagcttgcaaatgcaggtgttcccatcaatgccaag
gtgtctgaccgatgtctgcattccctgaaaaggaaagcgaattttatttccccagtaccg
gccaaaaaaaagaacctgatcttacgcagcaaaaatgtcaaagaggaaaaatccgagcca
acgcctcatttattcaagaagattcggccaacgaagaaagaaaaagtcaagttgaccatt
gcggcaaaaaagacatgcaaggtcatcctaaaaacccctgctgttcgtgtgacgccggaa
gtgcgcataaaggtgccctctcgttcatcatatgcaggggcggtaaaaacaaaagttctg
cctcccaggaagggcagaggcctgaaactggaggccattgtgcaaaagatcacttcaccg
aatcagaagaagcaagggattccgggtgcttgcttttacaacagtgtggcagctggtgac
aatagcctgaatgcgctaacaccaggaaaagaactgagagagcttagtttagtctctgca
gacagcgaaactaggacggtaagtcaaaacaatgcactaacgtcagaacctgatctacat
tctctgagttgcagaggctccaacaataggtccttaaaaggaaaacccttgcacagtaag
aaattgacctcctcttccctccactgcactaccacacacagagggacagagcaagagggc
agttatatcaaggcaaaaagactcagtacagttccaaagaggagaatcagaagaggtagg
tccaagggtgccgtggacagacccaaaaacacatcgaaaaggcagattggggcctctcct
tctgccctactgacatctagagataaggctctttcagaaagtgtccaccaaaccaacaag
tgcaaaaagcctcagctcaaggaggctcccagtgttcccagtggggtggaagaatcctcc
tctcaagtccgtgccaggaaaaaaacaaagtacgctagcttcaacggctacactaaaagg
cagcgcaaatgtgcaccccgaaataagcccgcaaagcaaactacagggagaaagtgtaca
gcgcggaggaagagtgtcccactcgtaagcccaaaggaacccgaaatcaagctgaaatat
gtctccaataaaccaatgcggtcagaaagtcgggtccgacccttctcaccttacattcaa
gtggagaacaagaacgaatacactacaacctgcacagtgataaatactgcggtggaagag
aacaggttgctgaaggagagaagcatcatgcattcagttcctcactctgcctcgtttgcc
agctctggcactttgcctctctcctcccgaatgcagctggggccactagtgtgcaaggca
gtgccctctggctgcctcgtctgctgcctttgtcggaaccctgccaatttcaaagacttg
ggggacctttgtgggccttattacccaatggactccctacctaacaagaaaggcaggcca
aaggataagttcagaatagcagaggcgccagcagagaaagctgccaaagtctcagacagc
gtctgtacagtgggtagtgggagggcaccttgctcggacgttggggaacttgacccaagt
aagcacaacaacctgcgcaccagtgctcgagggatgttgaggaaattgcccagctgttac
tgctgcagcaaaactgtggaaatagcagagactgagaaaccaaggagacatcagtgcaac
aaggccctggagccaccaactcctgaactggaaacccaggagcactgggtacatgaggcg
tgtgctgtatggaccagtggggtttacctggtggcaggaaagctgtatggcatcaatgag
gcaattcagatggcggccgcagggctgtgtcccaagtgtcagaggccaggagccaccgtg
ggctgtagccacaagggatgcgagcagagctaccacatcacgtgcgccgtggaagcaggg
tgcttactaagcgaagagaatttctccttgcgatgcccaaaacacaagaaacacctggtg
taa
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