Xenopus tropicalis (tropical clawed frog): 100488298
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Entry
100488298 CDS
T01011
Symbol
ifih1
Name
(RefSeq) interferon-induced helicase C domain-containing protein 1 isoform X2
KO
K12647
interferon-induced helicase C domain-containing protein 1 [EC:
5.6.2.6
]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04622
RIG-I-like receptor signaling pathway
xtr05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
100488298 (ifih1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
100488298 (ifih1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
xtr04054
]
100488298 (ifih1)
Enzymes [BR:
xtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100488298 (ifih1)
Pattern recognition receptors [BR:
xtr04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
100488298 (ifih1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CARD_2
RIG-I_C-RD
RIG-I_C
ResIII
DEAD
Helicase_C
CARD
SWI2_SNF2
AAA_22
DUF3638
Cas3-like_C_2
AAA_18
Motif
Other DBs
NCBI-GeneID:
100488298
NCBI-ProteinID:
XP_002933320
Xenbase:
XB-GENE-1011111
UniProt:
A0A8J0QN73
LinkDB
All DBs
Position
9:71923349..71951766
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AA seq
998 aa
AA seq
DB search
MPQNDSEDARGIYLIECFRARLVRYIQAVPVLDHLTWLGRDIREQVVSKAQNQGEQDAAR
LLLDRIVRGPREPGWFEAFVRALKDSHCTQAAAYLSEGRPTPSLEATWDYYEQLLIVLYP
ELIAKIDPKETAPLCRREEICSDEDVNVISNVTDQHGNQQGSRELLNRIIKKQDWFSKFL
TVLRTMGQNSLADYLTGSNNDENAESSGARPTVEGADDSSSVADIKMQHHELGSHDVKCE
NNLAESSFAGSNATSDLDTSSPELYCSADIESLEISDSDEQEETTASRASPVPQITLRNY
QMEVAKPALEGKNIIICLPTGSGKTRVAVYITREHLCKRREEGRLAKAIVLVNKVPLVEQ
HYRREFYPFLKDHYQVTKISGDSQLKNSFHKVVQEHDVVICTAQILENSLIQAAEDEEEG
VQLSDFSLIIIDECHHTQKDAVYNNIMIRYIKKKMQNKRNSKMEKAQVPLPQILGLTASP
GVGGAKNIKKSEEHILRICANMDAFKIMTVQENAEQLRKQVKDPYKEVKISDEKKKNPFG
DKLKEIMGKIEEYSKLYPTSDHGSQSYEQWVIQTDKTAAKEGKRKEHVCAEHLRKYNDAL
QINDTIRMTDSLIHLRKFYEEEKKRKILLNEGSEHVAPLNIEETDRFLIDLFYDNEKELT
AIAKNPKYENENLYALRSSLLEEFTRNGQARGIIFTKTRQSAVALNQWISDNEKFTEVGI
RSSYLIGAGHNSDFKPMTQNEQKQIIHKFSTGELNLLVATSVAEEGLDIKECNVVIRYGL
VTNEIAMVQARGRARADDSSYVLVAPSSSGAIERDSVNVYKEEMMHKAIAKVQKMDRATY
IDKIEEFQAQTIMEKKVKAKKAIHKVYQSNPSLVTFHCKKCSKQACCGTDIQVIATAHHV
NTTPKFKTLYSKGPNKTLQEKFADYQINGDIICKECGKTWGTTMVHKGIEVPCLQISKFV
VKYDDKKMTKDTYNKWSELPIKFPSFTYSLPDSDEDDD
NT seq
2997 nt
NT seq
+upstream
nt +downstream
nt
atgccccagaacgacagtgaagacgcaaggggcatatacctgatagagtgcttcagggcc
cggctggtcaggtacatccaggcggtaccggtactggaccatctcacctggctgggccgg
gacattagggagcaggtagtgagcaaagctcagaatcagggggaacaggacgcggccagg
ctgctgttggatcgcatagtgaggggccccagggagcccggctggtttgaggcgtttgtc
cgagctctgaaagactcccattgtacccaggctgcagcctacctgtccgaggggcgaccg
accccctccctggaagccacatgggactactatgagcagctgcttattgtcctctacccg
gagctgatcgccaagatcgaccccaaggaaacggcgcctctttgtcgtcgagaggaaatc
tgcagcgatgaagacgtgaatgtgatcagtaatgtgaccgatcagcacgggaatcagcaa
ggaagcagggaacttctgaacagaatcatcaaaaaacaggactggttttctaagtttttg
actgtattgcgtacaatgggtcagaattcgctcgctgattacctaacgggatccaacaac
gatgaaaatgcagagagtagtggcgccaggccgacagtagagggcgctgatgattcctcc
agtgttgctgacattaaaatgcagcatcacgagcttggaagccatgatgtgaaatgtgaa
aacaatttagcggagagctcattcgctggcagcaatgctacgtccgatttggacacgagc
tctcccgagttatactgtagcgcagatattgaaagcctcgagatcagcgattcagacgaa
caagaagaaacaactgccagcagagcttccccggtaccccaaataacactgagaaattat
cagatggaagtagcaaagccggccttggaggggaagaatattatcatatgccttcctact
ggcagcgggaaaactcgagtggcggtatacattacccgggaacatctatgcaaacgaagg
gaagaaggccgccttgcaaaggcaattgtacttgtcaacaaggtgcctttagtggagcag
cattaccgccgggagttttatcctttcctgaaggatcattatcaagtcactaaaataagt
ggggattcccagctgaagaactcattccataaggttgttcaggaacacgatgttgttatt
tgcacggcccagatactggagaattctctcatccaagctgctgaagatgaagaggaaggt
gtccaactgtctgatttctccctcattattattgatgaatgccatcacactcaaaaggat
gctgtgtacaataatatcatgatccgttatataaaaaagaaaatgcaaaacaaacgcaac
agcaagatggaaaaggcacaggttccactgcctcaaatacttggacttacggcttcgcca
ggagtgggaggggccaagaacattaaaaagtcagaagaacatattctgaggatatgcgca
aacatggatgctttcaaaatcatgaccgtgcaagaaaatgcagagcagctaagaaagcaa
gtgaaagatccatacaaggaggtcaagatttcagatgaaaagaagaagaatccattcgga
gacaaattaaaagagatcatgggaaagattgaggagtatagcaagctgtatcccacatct
gaccatggaagtcagtcttatgagcaatgggttattcagacagataagacagctgccaaa
gaaggaaaacgcaaggaacacgtgtgtgctgaacatctaaggaagtacaatgacgccctg
cagatcaatgacaccattcgcatgaccgactccttaatacatcttaggaaattttatgag
gaggagaaaaaaaggaaaattctgttaaacgagggttcagagcacgtggcgccattgaac
attgaggaaacagacagatttcttattgacttattttacgacaatgaaaaggaactaact
gcaatcgctaaaaatcccaaatatgaaaatgagaatctatacgcactcaggtcatcattg
ctggaggagttcaccaggaacggccaagccagaggcatcatcttcaccaagacccggcag
agtgctgtcgccctaaaccagtggatcagcgataatgagaaattcacagaagtgggaatt
cgatccagttaccttattggagcaggacacaacagtgatttcaaaccaatgactcagaac
gagcaaaagcaaatcattcataaattcagcacaggagaactcaatctactagttgcgaca
agcgttgcggaagaaggtttggatatcaaggagtgcaacgttgttattcgatatgggctg
gtcacaaatgaaatagccatggtgcaggcacgaggccgagccagagccgatgatagctcc
tatgtgttagtggcacccagttcatcgggagctattgagcgcgacagtgttaatgtgtat
aaagaagagatgatgcacaaagctattgccaaagtacaaaagatggaccgtgcaacttac
attgacaagattgaggaatttcaagctcaaaccataatggaaaaaaaagtgaaggcaaag
aaggcaattcacaaagtatatcagagtaatccgtccctggtaacttttcactgcaagaag
tgctccaagcaagcctgctgtggaaccgacattcaggtcatagcaaccgctcatcatgtt
aatacaactccaaaattcaaaaccctctacagtaaaggaccaaataaaacgctgcaagag
aaatttgcagattaccaaataaatggtgacataatttgcaaagaatgtggaaaaacatgg
gggacaacgatggtacacaaaggcattgaagtaccttgccttcaaatcagcaagtttgtt
gttaaatatgatgacaagaaaatgactaaggacacctacaacaagtggagtgaactgccc
atcaagttcccgtcttttacatattctctgcctgatagcgatgaggatgatgattaa
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