Xenopus tropicalis (tropical clawed frog): 100488458
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Entry
100488458 CDS
T01011
Symbol
cdh5
Name
(RefSeq) cadherin-5
KO
K06533
cadherin 5, type 2, VE-cadherin
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04514
Cell adhesion molecules
xtr04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
100488458 (cdh5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
100488458 (cdh5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
xtr04515
]
100488458 (cdh5)
04090 CD molecules [BR:
xtr04090
]
100488458 (cdh5)
Cell adhesion molecules [BR:
xtr04515
]
Cadherins
Major cadherins
100488458 (cdh5)
CD molecules [BR:
xtr04090
]
Proteins
100488458 (cdh5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
CADH_Y-type_LIR
Cadherin_2
Motif
Other DBs
NCBI-GeneID:
100488458
NCBI-ProteinID:
XP_004913631
Xenbase:
XB-GENE-480937
UniProt:
F7C290
LinkDB
All DBs
Position
4:57820536..57858072
Genome browser
AA seq
772 aa
AA seq
DB search
MKVKWLQFLIIMCCSLLLFSKEFTNAETHPDKTTRRVKRGWIWNQMFISEERNGNLPHYV
GKLQLNSSVLHQNAKFAIQGESANTIFKVNEKNGDIYCFERLDREKKSEYHLMALLVDKK
TAKTLEHPSNFVIRVIDINDNAPQFTQKAFNGSVNEMSDRGTFVTKVTAVDNDDPTIGGN
AEVTYKIIQGQEYFTIDNIGTIYTAVSNLDREQRDTYEVVVEARDSPGQNMYMSSTATVI
INLIDINDNFPTFTESQFKFDVPETLKVGGEVGRLKVEDIDEPQNRNTKYSFLKERFQEI
FAVTTNVNTNEGILILKKPLDYESVKQYNVDIEATDPLIDLRVAKQTRPKSITNVIINVL
DVDEPPVFSKPFYKFEISEDSKLNNIIGFVSAKDPDAANRNIRYSMRNFKDEPIKVTNNG
NIINVKTLDRETADWHNFTVVAEEVDPSNPPIKKESLGLVFIKVLDVNDNAPEFAEPYAP
RVCENAAHQTVITNISATDKDEMKPKMKFTYYSAKKENNFTVQDNHDNTATILVKYGYFN
REVAKFHYLPIVISDNGQPEQSSTNTLTITVCKCNEKGEFTFCEEAGKLAAVSVPTIVII
FVSLFLIILVVTILAVLRRMQKKNTNILGKNTAEIHEQLVTYDEEGGGEMDTNSYDVSVL
NSVRRNVQRPRQEMEASPYLYAHVQKPTRNGDMSFMIEVKKDEADNDGEGLPYDTLHIFG
YEESESIVESLSSIESGSSESDIDYDVLNNWGPRFKMLADLYGLEPIEDFPY
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
atgaaggtgaaatggcttcaatttctgattataatgtgttgctccttgctcctattcagc
aaagagttcacaaatgctgaaacacatcctgacaaaaccaccaggcgtgtcaagagagga
tggatatggaatcaaatgtttatttcagaggaaagaaatggaaacctgccacattatgtg
ggaaagttacagcttaattccagcgttttacatcaaaatgccaagtttgccatccaaggg
gagtctgccaacacaatttttaaagttaatgagaaaaacggggatatctactgctttgaa
agactagaccgtgagaagaagtctgaatatcacctgatggctctactggtagacaaaaaa
acggccaaaactctggagcacccttccaactttgttatcagagttatcgatataaatgac
aatgcgccgcaatttacacagaaagcttttaatggatctgtgaatgagatgtcagacaga
ggtacttttgtgacaaaagtcaccgctgtagataatgatgatcctacaataggtggaaat
gcagaagtgacctacaaaatcatccaaggacaagagtactttacaattgataacattggg
acaatttatactgcagtatcaaatttagacagagagcagagagatacctatgaagttgtg
gtggaggccagagactccccagggcaaaatatgtacatgtcaagcacagccacagtgatc
attaacttgattgacattaatgacaattttccaaccttcactgaaagccagttcaagttt
gacgttccagagaccctgaaggttgggggtgaagtgggaaggttgaaagtagaagatatt
gatgagccacagaacagaaacacaaagtatagttttttgaaggaaagattccaggaaatt
tttgctgttaccacaaatgtgaacacaaatgaagggattttgatattaaaaaagcccctg
gactatgagagtgttaaacaatataacgtggacattgaagcaacagatccccttatcgac
ttacgtgtggcaaaacagactaggcccaagagtattacaaacgtcatcattaatgtcctt
gatgtggatgagcccccagtgttttccaaaccattctacaaatttgaaatttcagaggat
tctaaattaaacaatattattggatttgtctcggcaaaagatcccgatgctgctaataga
aacatcagatattctatgagaaattttaaagatgaaccaatcaaggtaacaaacaatgga
aatattatcaatgtcaagacgcttgacagagagactgcggattggcacaatttcactgtg
gtagctgaagaagttgatcctagcaaccctcctattaaaaaagagtctttgggacttgtt
tttataaaagtgctcgacgtaaatgacaatgctccagaatttgccgaaccttatgcgccc
agagtgtgtgaaaatgcagctcaccaaacggttataacaaacatttctgctactgataag
gatgaaatgaaaccaaaaatgaagtttacatattattcagctaaaaaggaaaacaatttc
acagtgcaagacaatcatgataacacagctaccatcctggtcaaatatggatattttaat
agagaagtggcaaagttccattatctgcctattgtgatctcggacaatggacagccggag
cagagcagcaccaatactcttacaattactgtgtgcaaatgcaatgaaaaaggagaattc
acattctgtgaggaggctggaaagctggctgctgtttctgttccaacaattgtcatcata
tttgtgtctttatttctaattattttggttgtcacaatattggcagttctaaggaggatg
cagaagaaaaataccaacatcttagggaaaaacacagcagagattcatgagcaactggtc
acctatgatgaggaaggcggtggagaaatggacacaaacagttatgacgtatctgtattg
aattctgtgcgcagaaatgttcaaaggccaaggcaagaaatggaggcaagtccctatctg
tacgcccatgtccaaaaaccaacaagaaatggagacatgtctttcatgattgaagtgaag
aaggatgaagcagacaatgatggggaaggattaccatatgacacccttcacatatttggg
tacgaagagtcagaatctattgtggagtcactcagctctatagaatctgggtcttcagaa
tcagatatagactatgatgtattaaataactggggccctagatttaagatgctagctgat
ctttacggtctggaaccaattgaagactttccttattag
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