Xenopus tropicalis (tropical clawed frog): 100488523
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Entry
100488523 CDS
T01011
Symbol
frem1
Name
(RefSeq) FRAS1-related extracellular matrix protein 1 isoform X1
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100488523 (frem1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
xtr04091
]
100488523 (frem1)
Lectins [BR:
xtr04091
]
C-Type lectins
Lecticans
100488523 (frem1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Lectin_C
Calx-beta
Peptidase_M24
Motif
Other DBs
NCBI-GeneID:
100488523
NCBI-ProteinID:
XP_002939136
Xenbase:
XB-GENE-22169438
UniProt:
A0A6I8R9C8
LinkDB
All DBs
Position
1:124117685..124192517
Genome browser
AA seq
2173 aa
AA seq
DB search
MKPSIVYPVLLSVLLTRGLCASFIKVNHGMKVMKGQSAFLSESDLQFSIPREKDACKVEV
VVNEPITQRVGRLTPQVFDCHFLANEVQYTHNGCPILDEDEVMLRLYRFTETETFTETFL
LRVKLIEPDCNIIQLGPKKLEVPEFYGLSDVIDKNILSFDYDKRINIECTIRISSSESFL
PAHGQLVTGDPVKQEPRGDQPHSFFHGSNQKPGPLCKNGGCIQGLKRIQSVIKMSCEDFL
VKGIRYQHLDPPSPNVDYISIRLDLTDSRSKSLYKSEHAWIPVLIRDAVPNQIPKANFMS
MFILEVDQFVLTPISTATLDAEDSETAKHLLVFNITLPPSKGFITHLSDHTKPITSFTWK
DLNEMLIAYQPPNSSHTERRNLEVEFEVHDFFFEKSPPITVHISIRTADTNAPRVSWNMG
LDLLEGQSRPITWKQFQIVDNDNINAVRLVIVDGLQHGRITLRGGKGFIFTVKDIQAGDV
CYHHDDSDTTKDFIVFRIFDGRHSIRHKFPINILPKDDSPPFLITNIVIELSEGQAVLIE
GSMLCASDMDSSDAYIRFNITKPSVAGEIIKKPGQNLIAYPVTSFLQRDLYNGFIYYRHL
GGEVFEDSFDVVLSDSHDPPNFSGPQAVIIHISPVDDQLPIEAPGTVRHLMVKENEVVYI
TKKQLHFIDPESPERELIYTVATPPCMVPTYSSLDAGKIVLVDTILKLGKDYAGDTARTF
SQHAVNHLKVAYIPPAKDIGPTPLHVQFILSVSNQHGGTVQGICFNITILPIDNQPPEVF
SYDLKVEEGGFSQITASNIHITDKDTRQEQIKVILHKAPLHGIVQLDGSALQEGDPFTCL
DLITLKVRYLHDGSETLQDEISFIATDGINSSEFILKIQVSPINDEPPFIKENLISTIIC
KEGAEVVISADYISATDADSDDMKLIFMIARQPRYGILLKAGSIIDQFTQRDVVEGLVHY
RHTSGEIGLKVYVDIITLVVSDAEADKPQKKCCNNGPRLPILPNHESFPVYDLNVTILPV
DNQPPSVIIGEIFVVDEGKSSALSVDHLSAMDPDTESNNLEFILVSPPRYGYIENVLPSP
GFEKSNMGISIAAFLLKDIKSLNINYVQSRHQRIEPTTDQFTLYVTDGKLRSVEKPFYIV
INPTNDEVPEFLARNITVVEGQMKKLDPTVINVSDMDVPQNHLYFTVIEQPRHGLIIEES
YISGHMNRSQLIKRHQANSLPVIQDFSMDLLKNGMKMIYMHDDSENLADSFTIQLSDGKH
EVRRTIFVNVIAVNDEKPVLTKHCDLVLSMGEQTLISSAILSAEDMDTPRTNISYVIDRC
PEHGQLQMKVNKNWVTLHTGMKCTQEDIDMNLVRYVHTGTMGSKNEDTFTFHLWDGGNRS
PEISVHIYVKDMEKGDIAVFVKMLNVSKGERVIITTNVLLATDGTDRPEELLYVLSSPPQ
YGQIEYVKHPGIPITSFSQMDVAAHTICYVHDFNSAATTDMFRFLVSNGLKTKHGIMNIA
LETVDRTLPTLSRNDGLRQVRGSMECISPATLQALDPDTSSQNITFQLVGLPQYGQLYLR
GFPLQQDHFTQRDIDNLDIAYKHAGQDAQIDRFMFTVTDKANQGFIINGKIQTEPVPFTI
QVDPVDSTAPRIVHLQCLTEVELLKNGQYGIYITSRHLKASDPDTDDERIVFHILGGPHY
GYLENVTTGRFIRERFTQRDLNSKSVLYVINPSVDVFHDNIEFEVSDPVGNRALPQILEL
KWSQIELLQGMYEVCETEAVVSLKMTRKGYLLESAFVSLKVNEISAVLGKDISMNPSRLI
QFDPGVSTKTWNIVIIQDGLEEDDEVFEVVLSSPVNAVLGSKTRAVVKIVDPRGGGCSSS
KVSMIKTTGMGLLNCTVKPSRKPCAVFSFKETADKVREDVQEDVHTLQLPRKRLRLTGNR
KTVKPSSVFRNKTDIIYQYHGIVSLRVEEDKPVLNETKKAKVLVKNRGQRKINAPSQNPD
ILQSGRTMLDSHVTTGGQDNAISFPKRCTPSLKGLLHFEDTVQKLFQCDGISWNPWITTK
DSKAGKCPFGWTYHDGYCYILINDQKATWITAARACREQHFATLVDVFSKEQMEWLWNFS
GRKSFWIGLNDRVRNGNWEWSKGEMVTFTNWKRGSPRSSHKGKNCVLAQKRGKWQAKDCK
KGKGHYYICSKKL
NT seq
6522 nt
NT seq
+upstream
nt +downstream
nt
atgaagccttctattgtatacccagttttgctgtcagtgttgctcacaaggggcctctgc
gcctcctttatcaaagtcaatcacggaatgaaagttatgaaaggacagagtgcattcctc
tcagaaagtgacctgcagttttccatcccaagggaaaaggatgcctgcaaagtggaagta
gttgttaatgaacccattacacagagagttggaaggttaacaccacaggtgtttgactgc
catttcctagccaatgaagttcagtacacacacaatggctgccctatcttggatgaagac
gaggtcatgctcagactttacagatttacagaaactgagacttttactgaaaccttcctg
ctgagagtgaagttaatagagcctgactgtaatatcatacagctggggcctaaaaagctt
gaagtgccagagttttatggtctgtctgacgttattgataagaacatactgagctttgac
tatgacaaaagaataaacattgaatgtaccatcagaatatcgtcttctgaatctttcctt
cctgcacacggtcagcttgtgacgggggatcctgtgaaacaagaaccacgaggagatcag
ccacacagcttcttccatggatcaaatcaaaagccaggacctttgtgcaagaatggaggc
tgcatacaaggtttaaagaggatccagagcgttataaaaatgagttgtgaagatttcctt
gtaaagggcatccgataccagcacttggatcctccatctccaaatgttgattatatcagt
atcaggttggatcttacagactcaaggagcaaatcactttacaagtcagaacatgcttgg
attcctgttctcattcgggatgctgttccaaatcaaatccccaaagccaacttcatgtct
atgtttatcttagaagtagatcagtttgttctaacacccatctcaactgcaacactggat
gccgaggacagcgaaacagccaaacatcttctggtcttcaatattactttacctccaagc
aaagggttcatcacacacttgtctgaccataccaagcccattacatcctttacatggaaa
gatctcaatgaaatgctcatagcatatcagcctccgaacagcagccacacagagagaaga
aatttggaggtggagtttgaggtgcatgatttcttttttgaaaagagtcctccaattaca
gtgcatatctctatacgtacggctgacaccaatgctcctcgcgtttcatggaacatgggt
ctggatttactggagggccagtctcgaccaattacatggaaacagttccaaattgtggat
aatgacaacatcaatgcagttcgtttggtcattgtagatggattgcagcatggacgtatt
actctgagaggtgggaaaggatttatattcacagttaaggacatccaggctggagatgtt
tgctaccatcatgatgacagtgacactactaaggattttatagtcttcagaatatttgat
ggacgtcacagcatacgacacaagtttcctattaacatcctaccaaaagatgatagccct
cccttcctcatcacaaacattgttattgagcttagtgaaggtcaagctgtccttatcgag
ggatctatgctttgtgcttctgatatggactctagtgatgcatacatacgttttaatatc
actaagccttctgtagctggagagattataaagaagccaggacaaaatcttattgcttat
cctgtcacaagcttcctgcaacgagacttatataacggtttcatttattatcgccatctt
ggaggagaagtatttgaagattcatttgatgttgttctgtctgatagccatgatccacca
aacttttctggtcctcaggcagtaatcattcatattagccccgtggatgaccagctgccc
atagaagcacctggaacagtacgacatctgatggtaaaggagaatgaggttgtttatata
acaaagaaacaactgcatttcatagacccagagtcacctgaaagagaacttatttacaca
gttgctactcctccttgtatggtgccaacctacagcagcttagatgcggggaagatagtt
cttgtagacactatacttaaacttggaaaggattatgcaggagacacagcaagaacattt
tcacagcatgctgtgaatcacctcaaagttgcttacataccaccagctaaagacattggg
ccaactcctctacatgtccagtttatattatcagtgagtaaccaacatggaggaacagtt
caaggcatctgtttcaatatcactatccttccaatagacaatcagcctcctgaggtgttt
tcatatgatttgaaagttgaagaaggtggtttcagccaaattactgcaagtaacattcac
atcacagataaggacaccagacaagaacaaattaaagttattttacacaaagctccactg
catggtatcgttcaacttgatggatctgcattgcaggaaggtgacccattcacctgcttg
gacctcatcacattaaaagttaggtaccttcatgatggttcagagaccctacaagatgaa
atctcatttattgcaacagatggaatcaattcatctgagtttattttaaaaatacaggtt
tctcctattaatgatgaacctccatttattaaagagaacctaatttccaccattatttgc
aaagaaggggcagaggtagtcatatcagcagactatatctcagctactgatgcagacagt
gatgacatgaagctgatatttatgatcgctcgccaaccacgttatggcattttgctaaag
gctggatctatcattgatcaattcacccagagagatgttgttgaaggactggtacattat
agacatacaagtggcgaaattggcttgaaggtctatgttgatattataacactggtggtt
tctgatgctgaagcagataaaccgcagaaaaagtgctgcaacaatggtcctcgtctgccg
attttgccaaaccatgagtcttttcctgtatatgatctcaatgttacaattctgccagtg
gacaaccaacccccatcggttataataggtgaaatatttgtagtcgatgagggcaaatca
tctgccctcagtgtagatcatttaagtgccatggaccctgacacagaaagtaacaatctg
gaattcatactggtttctcctcctcgatatggttacattgaaaatgtcctcccatctcct
ggatttgagaagagtaatatgggtataagtattgctgcatttctactcaaggacattaaa
tctctgaacatcaattatgtccagtcccgccatcaaagaattgaaccaaccactgatcag
tttacactgtatgtcactgatggcaaactgcgttctgtagaaaagccattttacatcgta
atcaatccgacaaatgatgaggttccggaatttttagccagaaacataacagttgttgaa
ggacaaatgaagaaattggatcccactgtaataaatgtgtcagacatggatgtgccacag
aaccacttatactttactgttatagagcagccccgacatggactgattattgaggaatcg
tatatcagtgggcacatgaatagaagccaattaataaaaaggcatcaggcaaacagcctg
cctgtgatacaagatttttccatggacctgctaaaaaatggaatgaagatgatatacatg
catgatgactcagaaaaccttgctgacagcttcactatccagctatctgatggaaagcat
gaagtcaggagaactatttttgtgaatgtaattgcagttaatgacgaaaagcctgtgcta
accaagcactgcgatttggtgctaagcatgggggaacaaactcttatatcaagtgccata
ctgtcagcagaagatatggacacacccaggacaaacatttcctatgttattgacagatgt
ccagagcatggccagcttcagatgaaagtcaataaaaactgggtgaccttgcatactgga
atgaaatgcactcaggaggacattgatatgaacctggttagatatgtgcatactggaaca
atgggctcaaaaaatgaagacacgtttactttccacctttgggatggcggaaaccgatca
cctgagatatctgttcatatttatgtcaaggatatggaaaaaggagatattgcagttttt
gtgaaaatgcttaatgtgtccaagggagagagagttatcataacaacaaatgtccttctc
gccactgatgggaccgacagaccagaagagctgctgtatgtgttatcctcgccaccccaa
tatgggcagattgaatatgttaagcatcctggaatccccataacaagtttcagtcagatg
gatgtggctgctcacacaatctgctacgtccacgatttcaattcagcagccactactgat
atgtttagattcctagtcagcaatgggctgaaaacgaaacatgggatcatgaacatcgca
ctggaaacagtcgatcgaactcttccaacactatccaggaacgatggtctaagacaagtg
agagggtctatggagtgtatttccccggccaccctacaggcactggaccctgacacgtca
tctcagaacattacttttcagttggtgggtctccctcaatatgggcaattatacctcaga
ggctttccactacagcaagatcacttcacccaaagagatattgacaatctagacattgcc
tataagcatgctggacaggatgctcaaatagacaggtttatgtttactgttacagacaaa
gcaaatcaaggatttatcattaatgggaagattcagacggaaccagttccattcacaata
caggtagatcctgtggacagcacagctcccagaattgtccatcttcaatgccttacagaa
gttgagcttctgaaaaatggccagtatggaatttatattacttcaagacacttaaaggca
tctgatccagacacagatgatgaaagaattgtctttcacatattaggagggcctcactat
ggttatttagagaatgttacaacaggcaggtttataagagaaagatttacacaaagggat
ttaaacagcaaatcagtgctctacgtaataaatccatcagtggatgtttttcatgacaac
atagagtttgaagtttcagaccccgttggaaacagagctttaccacaaattttagagctg
aaatggagtcaaattgaattgctccaaggcatgtatgaggtgtgtgaaaccgaggcagtt
gtgtctttgaagatgacaagaaaaggttatctcctggagtctgcttttgtttcgctcaag
gtgaatgaaataagtgctgttcttggcaaagacatttccatgaatccttccagacttata
cagtttgatccaggagtgtcaaccaagacttggaatatagtaattatccaggatggatta
gaagaagatgacgaggtctttgaagtagttctgagttctcctgtgaatgctgttcttggc
tctaagacaagagctgtagtgaaaattgtggaccccagaggaggtggctgcagttcctcc
aaagtcagcatgatcaaaacaactggaatgggcttactaaactgtaccgtcaaaccctca
cgcaaaccttgtgctgtttttagttttaaagagactgcagataaggtcagggaagatgtc
caagaagatgtccataccttacaacttccgaggaagagactaagactcacagggaacaga
aaaacagttaaaccatcatcagtatttagaaacaaaacagacattatttatcaatatcat
gggattgtgtctctccgagtggaagaagataagccagtattaaatgaaacaaagaaagca
aaagtactagtgaagaaccgtggtcagaggaagataaatgccccctcccaaaatcctgac
attcttcaatcaggcagaaccatgttggattctcatgttactactggtggtcaggataac
gcaatatcgtttcctaaaagatgcacaccaagtttaaaaggactcctgcattttgaggac
acagtacagaaactgttccagtgtgacggcatatcgtggaacccctggatcactactaag
gattctaaagcaggaaaatgcccatttggctggacttaccatgatggctactgctatata
ctgatcaatgatcaaaaggccacctggataacagcagccagagcatgtagagaacagcat
tttgctactctggtggatgtattcagcaaggaacaaatggaatggctttggaatttcagt
ggcagaaaatccttttggataggcctcaatgatagagtacgtaatggaaactgggagtgg
agcaaaggggaaatggtcaccttcaccaattggaaaagaggctctcctcgatcttcacac
aaagggaagaattgcgttttggcacaaaagagaggcaaatggcaggctaaagactgcaaa
aaaggcaaaggccattactatatatgttcaaaaaagttgtag
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integrated database retrieval system
