Xenopus tropicalis (tropical clawed frog): 100488621
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Entry
100488621 CDS
T01011
Symbol
scn1a
Name
(RefSeq) sodium channel protein type 2 subunit alpha isoform X1
KO
K04834
voltage-gated sodium channel type II alpha
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
xtr04040
]
100488621 (scn1a)
Ion channels [BR:
xtr04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
100488621 (scn1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_cytopl
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
ATP-synt_B
IQ
Lustrin_cystein
FraC
Motif
Other DBs
NCBI-GeneID:
100488621
NCBI-ProteinID:
XP_012826731
Xenbase:
XB-GENE-978019
UniProt:
A0A8J0SZI9
LinkDB
All DBs
Position
9:69876314..70014944
Genome browser
AA seq
2020 aa
AA seq
DB search
MAQARLVPPGPDSFRYFSRESLEAIEKRIAEEKAKKPKQEHRDDDDDNGPKPSSDLEAGK
SLPFIYGDIPPGMVSEPLEDLDPYYMNQKTFIVLNRGKAIFRFSATSALYILTPFNPLRK
VAIKVLVHSLFSMLIMCTILTNCVFMTMSNPPEWTKNVEYTFTGIYTFESLIKILARGFC
LEKFTFLRDPWNWLDFSVIVMAYVTEFVNLGNVSALRTFRVLRALKTISVIPGLKTIVGA
LIQSVKKLSDVMILTVFCLSVFALIGLQLFMGHLRNKCLQWPPIDYFPLINIPPILNGTM
NIHDPFGNTTNSTFDWEEYITDKNHFYKLEGQKDFLLCGNSSDSGQCPKGYICVKTGKNP
NYGYTSFDTFSWAFLSLFRLMTQDYWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLVNLI
LAVVAMAYEEQNQATLEEAEQKEAEFQQMLEQLKKQQEEAQAAAVAALNMSREYSEDGGF
GPLSESSSEASKLSSKSAKDRRNRKKKRKQKELGEEYEKGDDEKFPKSESETSIKRKGFR
FSIEGNRLTYENKFSSPHQSLLSIRGSLFSPRRNSRASLFSFRNRAKDVGSENDFADDEH
STFEDNESRRGSLFVPNRHGERRNSNISQVSKSSKTMTVLPANGKMHSTVDCNGVVSLLG
GPSVPTSPVGLLLPEVIVDKPASDDNGTTTETEIRKRKSSCYQVPMDLLEDPTARQRALS
VASILTNTVEELEESRQKCPPCWYKFANTFLIWDCCENWLTVKHIVKLIVMDPFVDLAIT
ICIVLNTLFMAMEHYPMTKEFNDVLSIGNLVFTGIFTAEMVFKLIALDPYYYFQEGWNIF
DGIIVSLSLMELGLANVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTL
VLAIIVFIFAVVGMQLFGKSYKECVCKIAENCELPRWHMNDFFHSFLIVFRVLCGEWIET
MWDCMEVAGQSMCLLVFMLVMVIGNLVVLNLFLALLLSSFSSDNLTATDDDNEMNNLQIA
VGRIQRGIDYVKKTIRECIQKAFVKKQKGLDEIKPLEELHNKRESCLFNHNAVEINKVLD
YHKGDNGTTSGVGSSVEKYIIDENDYMSFIHNPSLTVTVPIAVGESDFENLNTEDFSSES
DLEESKEKLNMTSSSEGSTVDIRPPGVVAEGEGEPIDIESEEALEPDACFTEGCVKRFPI
CYVNIEENKGKLWWTFRKTCYTIVEHNWFETFIIFMILLSSGALAFEDIYIEQRKTIKTM
LEYADKVFTYIFILEMLLKWVAYGFVKYFTNAWCWLDFLIVDVSLVSLVANALGYSELGA
IKSLRTLRALRPLRALSRFEGMRVVVNALIGAIPSIMNVLLVCLIFWLIFSIMGVNLFAG
KYYHCVNTTTGEMLLDTQVNNRSDCLHLNESARWKNVKVNFDNVGAGYLALLQVATFKGW
MDIMYAAVDSRKVEEQPRYEDNLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFG
GQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPPNKYQGLVFDFVTKQAFDIIIMILICLN
MVTMMIETDEQSQDMENNLYWINLVFIILFTGECILKIISLRHYYFTIGWNIFDFVVVIL
SIVGMFLADMIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIG
LLLFLVMFIYAIFGMSNFAYVKKESGIDDMFNFETFGNSMICLFQITTSAGWDGLLAPIL
NSGAPDCDPQMEHPGSSVKGDCGNPSVGIFFFVSYIIISFLVVVNMYIAVILENFSVATE
ESAEPLGEDDFEMFYEVWEKFDPDATQFIEYSKLSNFADALDPPLRIAKPNRVQLIAMDL
PMVSGDRIHCLDILFAFTKRVLGEGDEMDALRLPMEERFMASNPSKASYEPITSTLRRKQ
EELSVVIIQRCFRKYLLRKTIKKASYLYKKEKLGVNSLPIKEDMVIDKLNGNSTTEKTDM
TPSTTSPPSYDSVTKPEKEKHEKDKAEKENKSKDARENKK
NT seq
6063 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaggcacgacttgtaccacccggacctgacagcttccgctacttttccagggaa
tctcttgaagctatcgagaagcgcatcgcagaggaaaaagctaaaaagcccaaacaggaa
cacagagatgatgacgatgacaatggtcccaagccaagcagtgacttggaagcaggcaaa
agtctgccatttatatatggagacatacctccgggaatggtatcagagccactggaggac
ctagatccatattacatgaaccagaaaacttttatagtattgaatagagggaaggcaatc
ttccgcttcagtgccacatctgccttgtacattttaactcctttcaatcctcttagaaaa
gtagctattaaggttttagtacattcattattcagcatgctcattatgtgcactattctg
accaactgcgtcttcatgacaatgagcaatcctccggaatggaccaagaatgtagagtac
acattcactgggatttatactttcgaatctcttataaaaattcttgcaagaggtttctgt
ttagaaaaatttacctttctccgagacccatggaactggctggatttcagtgtcatcgtg
atggcgtatgtaacagaatttgtaaacctaggcaatgtttcagctcttcgaactttcaga
gtattgagagctttgaaaactatttctgtaattccaggcctgaagactatcgtgggcgca
ctgattcagtcggtgaagaagctttcggatgtcatgattctcacagtgttttgcctcagt
gtgtttgcactaataggactgcagcttttcatggggcacctaaggaataaatgtttgcaa
tggccaccaattgactatttccctttaataaatattcctcctatcctgaatggcacaatg
aacatacatgacccttttggtaacacgactaacagcacatttgactgggaggaatatatt
acagataaaaatcatttttacaaactggaaggacagaaagacttcttgctctgtggtaac
tcctcagattcaggtcaatgcccaaaaggatatatttgtgtaaagaccggcaaaaaccct
aattatggttatacaagctttgacaccttcagttgggcatttttgtctctctttcgctta
atgacccaagactactgggagaatttgtaccaactgacactacgagctgctggtaaaacc
tacatgatcttttttgtgctggtgattttcctgggttctttctacttggtcaacttaatc
ttggctgtggtggccatggcttatgaagagcagaatcaggcaactttggaggaagcagag
cagaaagaggcagaattccagcagatgcttgaacagctgaaaaaacaacaagaagaagca
caggcggcagctgtagcagcattaaacatgtctagagagtacagcgaagacggtggattt
ggacccctctccgaaagctcctccgaggcctcaaaattaagctcaaaaagtgccaaagac
agaagaaacaggaaaaagaaaagaaaacaaaaagaacttggtgaagaatatgaaaagggg
gatgacgagaagtttccaaagtctgaatcagaaacaagcatcaaaaggaaagggttccgt
ttctctatagaaggaaaccggctgacttatgaaaataagttttcttccccacaccagtca
ctgttgagcatccgaggatctttgttctcaccaaggcgaaacagcagagcaagcttgttc
agttttagaaatcgagcaaaggatgtaggttcagaaaatgactttgcagatgatgagcac
agcacatttgaggacaatgagagccgaaggggctctttgtttgttccaaacagacatgga
gaacgaaggaacagtaatataagtcaagtcagtaagtcatccaagaccatgacagtgctt
ccagcaaatgggaagatgcacagcacggtggattgcaatggagtggtctctctacttggt
ggcccgtctgttccgacttctcccgtgggattgcttctgccagaggtgatagtagataag
ccagcttctgatgacaatggcacaactacagagacagaaatccgaaaaagaaagtcaagt
tgttaccaagttcccatggatctgctagaagacccgacagctagacaaagagctctgagt
gttgccagtattttgaccaacacagtagaagaacttgaagagtccagacagaaatgcccc
ccatgctggtataaatttgcaaacacttttcttatttgggactgctgcgaaaattggctt
acggtaaagcacattgtgaaattaattgtgatggacccattcgttgacctagcaattacc
atctgcattgttttaaatacattgtttatggccatggaacattacccgatgaccaaggaa
ttcaatgatgttctgtctataggaaacttggtttttacaggaatctttacagctgaaatg
gtttttaagctcatcgccctagatccatattattattttcaagagggctggaacatattc
gatggcataattgtcagccttagtttaatggagttgggccttgccaacgtggaagggctt
tcagtacttcgatcattccgactgctccgtgtgtttaagttggcaaaatcctggcctaca
ctgaacatgctgataaagatcattggcaattctgtaggcgctttggggaacctgactctg
gtgttggccatcatcgtctttatttttgccgtggttgggatgcagctgtttggtaaaagt
tacaaggaatgtgtctgcaaaattgcagaaaactgtgagcttcctcgctggcatatgaac
gacttcttccactccttccttattgtgttccgagttttgtgtggggaatggattgaaacc
atgtgggattgtatggaagttgcaggacaatctatgtgcctccttgtatttatgctggtg
atggttattggaaacttagtggttttgaatttgttcctggccttgcttctgagctccttt
agctcagacaacctcacagccacagatgatgacaacgaaatgaacaatctccagattgct
gtgggaaggattcaaaggggaatagattatgtcaaaaaaacaattcgagaatgcatccag
aaagcttttgttaagaagcaaaaaggtctagatgaaatcaaaccactggaggaacttcac
aacaaaagggaaagctgcttattcaaccataacgcagtcgaaataaataaagtccttgat
tatcacaaaggagacaatgggacaactagtggagtaggcagcagtgttgagaagtacatt
atcgatgagaacgattatatgtcatttatacacaaccctagcctaaccgtaacggtgccc
atagcggttggggaatcggatttcgagaatctgaatacagaagacttcagcagtgagtct
gacctggaagaaagtaaagagaagctaaatatgaccagttcatctgaaggcagcactgtt
gatatcaggccaccaggggtagtggcggaaggagagggggaaccaatagatatagaatct
gaggaagctctggaaccagatgcctgttttacagaaggatgtgtcaagagatttccaatt
tgttatgtcaatattgaggaaaacaaagggaagctatggtggacatttaggaaaacctgc
tataccattgttgaacataactggtttgaaacctttattatctttatgattcttctcagc
agtggcgctctggcctttgaagacatctacattgaacaacgaaaaacaattaagactatg
ttggaatatgcagataaagtcttcacctacatattcatcctagaaatgcttttgaaatgg
gtggcgtatggttttgtgaaatatttcaccaatgcctggtgctggctggacttcctgatt
gttgatgtctctcttgttagcttagtagctaatgcactgggatattcagaactaggtgct
attaagtctcttaggacactaagggcactgagacctttaagagccctctctcggtttgaa
ggaatgagggtggttgtgaatgccctaattggcgctattccatccatcatgaacgtgctg
ctcgtttgtcttatattctggctgattttcagtatcatgggggtaaatctatttgctggc
aaatattaccattgtgtcaacacaacaactggtgaaatgttgcttgatactcaagttaac
aaccgatctgattgtctacatttgaatgaaagtgcccgctggaagaacgtcaaagtgaat
tttgacaacgtaggtgctggataccttgcactgcttcaagtggcaacatttaaaggctgg
atggatattatgtatgccgcagttgactcaagaaaggtagaagagcagccacgatacgaa
gacaacctttatatgtacttatactttgttatcttcatcatctttggctccttcttcact
ctcaaccttttcattggtgttattattgacaacttcaaccagcagaagaaaaagtttgga
ggtcaggacatctttatgacagaggaacaaaagaaatattataatgcaatgaaaaagctt
ggatcaaagaaaccccaaaagcccatccctcgaccaccaaataaataccaaggcctagtc
tttgattttgtgacaaaacaagcattcgacatcatcatcatgatccttatctgtcttaac
atggtaacaatgatgattgaaacagatgaacaaagtcaagacatggaaaacaacctgtat
tggatcaatttggtctttattattcttttcactggtgaatgtattctcaaaataatctct
ctgcgccattattacttcaccatcggctggaatatctttgattttgttgttgtcattctc
tccattgtaggtatgttcttggcggacatgattgaaaaatattttgtttccccgacatta
ttcagagttattcgacttgctcgaattgggagaattttgcgtctcatcaagggagcaaag
ggtattcgtacgttgctgtttgccttgatgatgtcactccctgcgttgttcaatattggt
ctcttgcttttcttggtaatgtttatttacgctatttttggaatgtccaattttgcctat
gtgaagaaagagtctggcattgatgacatgttcaattttgaaacttttggaaacagcatg
atctgcttgttccagatcaccacatcagctgggtgggatggtttattggcacccattctt
aacagtggcgcaccagactgtgacccacaaatggagcatcctggaagctctgtgaaaggt
gattgtggcaatccatcagttgggattttcttttttgttagttatataataatatcattt
ttagtggtggtaaacatgtatattgctgttattttggaaaacttcagtgttgctactgaa
gaaagtgctgaaccacttggagaagatgactttgaaatgttttatgaggtttgggaaaag
tttgatcctgatgccacgcagtttatagaatatagcaagttatctaattttgctgatgct
ctggatccacccctacgcatagctaaacccaatagagttcagctaattgctatggatctc
ccgatggtaagtggagacagaattcactgcctagacattctgtttgcctttacaaagcgt
gtcttgggtgaaggtgatgaaatggatgctttacggttaccaatggaagagcgttttatg
gcatccaatccttcaaaagcctcttatgaaccaattacatccacgttacgacgaaagcaa
gaggaattgtctgtcgttattattcagcgctgtttcaggaagtatctattaagaaaaaca
attaaaaaggcttcttatttatataagaaagaaaaacttggagtaaatagcttgcccatt
aaagaagacatggttattgacaagcttaatggaaattccaccacagagaagacagacatg
actccctctaccacttcacctccatcttacgatagcgtgacaaagccagaaaaagagaaa
catgaaaaggacaaagctgaaaaggaaaacaaaagcaaagatgccagggaaaataaaaaa
tga
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