Xenopus tropicalis (tropical clawed frog): 100488728
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Entry
100488728 CDS
T01011
Symbol
col28a1
Name
(RefSeq) collagen alpha-1(XXVIII) chain
KO
K23619
collagen type XXVIII alpha
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
xtr01002
]
100488728 (col28a1)
Peptidases and inhibitors [BR:
xtr01002
]
Peptidase inhibitors
Family I2: Kunitz - BPTI family
100488728 (col28a1)
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Motif
Pfam:
VWA
Collagen
VWA_2
Kunitz_BPTI
VWA_3
DUF236
Baculo_LEF-11
Motif
Other DBs
NCBI-GeneID:
100488728
NCBI-ProteinID:
XP_031760315
Xenbase:
XB-GENE-956674
UniProt:
A0A803J251
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Position
6:complement(34285537..34348354)
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AA seq
1142 aa
AA seq
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MGNLTFHQGLWKLNYALCALLLFACIRHSVNGQSRKKNANNGVRGLSAEDQECFLDVMFI
VDGSESTKGHLFKQQKDFVLNFTDQISHLKLAKPWKTKTKMAIIQFSSSVRIEQSFNEWT
GVENFKRIVNSMTYIGQGTYTYYAIMNATNIFKAHKSAGNVKVAILMTDGIDHPKSPDAR
QASDFARAAGINFISIGLSTQKANKTILFKISGQSLSEPVLILGDPNLLQEILEKLASIA
NTQCDKGTCICEKGEAGPAGPQGNSGERGEKGDRGAKGEPGESAKGDPGMKGEEGPPGTE
GPKGDRGECGKPGVKGDRGPGGPPGQIGPRGYQGISGPPGQTGPRGNQGDKGEPGPEGPR
GPDGIPGVGHQGAKGEKGEEGRIGPPGPPGIGEPGSPGSPGSEGMPGERGQPGEGVAGQK
GEKGSEGPQGRSGLPGLSIKGDKGDIGPPGTPGQLGLPGSGSPGPQGLQGIRGLPGPRGP
QGLSIPGIKGETGEKGTPGPAGLTTPGFPGLKGNPGLPGPKGDSGEKGNEGKEGKKGEQG
ISGPQGPEGRPGIGLEGQKGDQGEKGSVGLIGTRGIPGPPGPKGEPGINGLIGLPGPSVV
GPPGLKGDIGPQGPEGPVGDPGQSVKGEKGDVGYVGPPGITGPKGEGSPGIPGPRGIPGA
QGLPGEKGTGDPGQKGEPGIRGPQGLPGPRGIGSPGSKGTMGQKGIQGTPGPTGYGVPGP
KGESGYKGSIGPKGSIGHGVPGSKGNEGIMGESGMKGTKGEIGNPGSVGRMGPKGEKGEL
GLTREDIIRLIIEICGCGKDCKDVPLDLVFIIDSSESVGPENFDIIKQFVNRVIDKISTD
QSASKVGIINFSHKVEVVAHIGQLSNKENLREAINRMNYLGEGTYTATAIKKSTELFQQS
RGDVKKIAIVITDGQADVRDNLSLDLVVREAHSVNVEMYVIGVVDTHDPNYNLFRNEMNL
IASDPDEEHVFQIADFSTLSELENKLFRKICTKDSYPWLETLSRIESAATVPSVVVTEPY
QTDREQEVIHYPQSTQPPAQDQKVTVSIKDIAEPRPTQKPGALEVVKPAGAPSTQTVVQD
IRQEQDARCLEDMTPGTCRDYVVKWYYDKIADSCARFWYGGCEGNRNRFDTEKDCQTICM
TL
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
atggggaatttgactttccatcaaggtttgtggaaattaaattatgctctgtgcgcccta
ctgttgtttgcctgcataagacattctgtaaatgggcaaagcagaaagaagaatgcaaat
aatggtgtaaggggcctttcagctgaagatcaagagtgctttctcgatgtcatgtttatt
gtcgatgggtcagagagtacaaaaggacatctttttaaacagcaaaaagattttgttctg
aatttcactgatcagatttcccatctaaaacttgccaagccatggaaaaccaagacaaag
atggcaatcatacagtttagcagctcggtcagaattgaacaatcattcaatgaatggaca
ggtgtggagaattttaagagaattgtcaactctatgacctacattggacaaggcacttat
acttactacgctataatgaatgcaactaatatatttaaagctcataaaagtgcaggcaat
gtaaaagtggccatactaatgacagatggcatcgaccatccaaaaagtcctgatgcaaga
caggcttcggattttgccagagctgctggaataaacttcatctccattggcctttctact
caaaaggcaaataaaacaattcttttcaagatatctgggcaatcactcagcgaaccagtt
ctcattctgggtgatccaaatctgttgcaggaaatactagaaaaactggccagcattgca
aacacccagtgtgacaaaggcacatgcatttgtgagaagggagaagcgggacctgctggg
cctcagggcaacagtggagagagaggtgaaaaaggagacagaggcgcaaaaggagaacca
ggagagtctgctaagggagatccaggaatgaaaggagaagagggcccacctgggactgag
gggccaaagggtgacagaggagaatgcgggaaacctggggtaaaaggtgacagggggcca
ggaggtccgcctggacagataggtcctagaggatatcagggtatctcagggccaccaggg
cagactggtccgagaggaaatcaaggagacaagggtgaacctggccctgaaggtcccagg
ggtcccgatggaatccctggagttgggcatcaaggagcaaagggtgagaagggagaagaa
ggacgtataggaccaccgggacctccaggcattggggaacctggttctcctggaagtcct
ggctcagaaggaatgccaggggagagaggtcagcctggagagggtgttgctggacagaag
ggagaaaagggatcagaaggtccccaaggacgtagtggcttaccgggattgtccattaaa
ggtgataagggagacattgggcctccaggaacacctggtcaactaggacttccaggctca
ggctctccaggacctcagggcttacaaggaataagagggttacctggtccaaggggtcct
caaggtctctcgatacctggtataaagggtgaaacaggtgagaaaggaaccccgggccct
gcaggcctgaccacacctggttttcctggacttaaagggaatccagggcttcctggacct
aaaggagactcgggagaaaaaggaaatgaggggaaggagggaaaaaagggcgaacaaggg
atttctggaccacaagggccagagggtcgacctggaattggacttgagggtcagaagggt
gatcaaggggagaagggatctgttggtttaataggtacaagaggaattcctgggcctcca
ggtccaaagggagaaccaggaataaatggattaataggtctacctggaccctctgtggtt
ggacctcctggactaaagggagacataggaccgcaaggaccagagggaccagtaggagat
ccgggccaatcagtcaaaggagaaaagggtgatgttggctatgtaggaccaccaggtata
actgggcccaaaggagaaggcagtccaggaatcccaggtcctcgtggtattcctggtgca
cagggattacctggtgaaaaaggtaccggagaccctgggcaaaagggtgagccaggaata
agaggtcctcaaggacttcctggaccaagaggaatcggatcacctggaagtaagggcaca
atgggacagaaaggaatacaaggaaccccagggccaactggatatggtgttccaggacca
aagggagaatctggatataaaggatcaataggacctaaaggatcaataggacatggcgtt
cctggctctaagggaaatgaaggtatcatgggggagtctggaatgaaaggtaccaaaggt
gaaataggtaaccctggcagtgttggaagaatgggacctaaaggggaaaagggtgaactt
ggactcacaagagaagacataataaggctgataattgaaatttgtggttgtggaaaagat
tgcaaagatgtcccgctggacctcgtctttattattgacagctctgaaagcgtgggacca
gaaaactttgatatcattaaacaatttgtgaacagggtcatcgataaaatatcaacagat
caatcagcttctaaagtaggaataataaacttcagccacaaagtagaggttgttgcacac
ataggtcaactgtccaacaaagagaacctaagggaagccatcaatcgcatgaattacttg
ggagaaggcacatacactgcgaccgccatcaaaaaatcaacagaattgtttcagcagtcc
agaggagatgtgaaaaaaatcgccattgttatcacagatgggcaggctgatgtccgcgat
aatttatcactggaccttgttgtgagggaagcccattctgtaaatgttgaaatgtatgta
attggggtggtcgatacacatgaccctaactataatctcttccgaaatgaaatgaacttg
atcgcttctgacccagatgaggagcatgtgttccagattgctgacttttcaaccctttca
gaacttgaaaacaaattattccgaaaaatttgcacaaaagatagttacccgtggcttgaa
accttgtcaagaatagaaagtgctgcaaccgttccttctgttgtggttacagaaccttat
cagactgacagagagcaagaagttattcattacccacagagtacacagccacctgcacaa
gatcaaaaagtaacagtgtccataaaggatattgcagaacccagacctacccagaagcca
ggagctttagaagtggtgaaacctgccggtgcacctagcacccaaacagttgtgcaagac
atcagacaggagcaagatgcaaggtgcctagaggatatgacgccgggaacttgccgcgac
tatgttgtcaagtggtattatgacaagattgcagactcctgtgcccgcttctggtacggt
ggctgtgaaggaaacaggaatcgctttgacacagaaaaggactgccagactatttgtatg
acactataa
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