Xenopus tropicalis (tropical clawed frog): 100488998
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Entry
100488998 CDS
T01011
Symbol
vps13a
Name
(RefSeq) vacuolar protein sorting-associated protein 13A
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xtr04131
]
100488998 (vps13a)
Membrane trafficking [BR:
xtr04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
100488998 (vps13a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
RRM_fung
DUF2750
DUF5764
Motif
Other DBs
NCBI-GeneID:
100488998
NCBI-ProteinID:
XP_031746767
Xenbase:
XB-GENE-989613
UniProt:
F6X0I8
LinkDB
All DBs
Position
1:132238208..132336152
Genome browser
AA seq
3186 aa
AA seq
DB search
MVFESLVVDVLNRFLGDYVVNLDSSQLKLGIWGGAVALKNLEIKENALSQLDVPFKVKAG
HIGKLDLKIPWKNLYTQPVEAVLDGVYLLIVPTASIKYDAEKEEKQSLEAKQRELQRIEE
AKQKVADQEKPKEEKQDTFVEKLITQVIKNLQVKISNIHIRYEDDITNPKCPLSFGVSLQ
NLSLQTSDKNWNPCLHDESAKLFYKLVRLDNLFAYWNVKSDMFYHRSYDTALEILKYGIA
ARNTIPEGYDFVFRPISGRAKLRMNPRSDVDFSSPKIDLDVNLQDIAIDFNKPQYHSVME
LLESIDLMSRNLPYRKFRPDVCVATNAPIWWKYAITSILEVNIKPRLHMWSWKRIRKHRL
QVKKYKELYRMKITSKKPSEEVLSKTEEYEKALDIFNITLARQQAEMEACKAGLKIYRPG
SKDEDCNSKGWFGWMWGWSGETAEKKEDFKSGSLEGLMSPEEKVRLYAAIGYSETAVDPT
LPKTYEAMRLCVKLLSMSIQLREDKGKTELINFAITDLSTVLKQRPGAQAIKFEAQIGTF
EVTGTPQEKSVPCVLSSRNLIENNISLLSLMFETNPLDERADQKLQVESQPLEIIYDAKT
INNLVDFFRPPQDVHLEQLASATMTKLEEFRDRTSTGLLYVIETQKVLDLKINLMASYII
VPENGFYEQSSNLLLLDLGSLKMVSKSRSHLPQLKIGQSSIEDIMSRAYDSFDVQLSKMQ
LLYRKNNEDWKKARNLKRSSLHILEPMDLKVEFSRAMVVTDARMPKCKLSGELPILSIQI
SDQKLKGVLELIDSIPKPESPPEPYPSPQKIAIQKSTSVVNTPQLAPRRPAIVDLPSLIE
SESEEEFYDAPTSPVDEKPFFEVSSGAVARTDSLRKKKLKRQETQKNMTEFQMRFEIPTV
TIQLCSLSKDVEKTVLHLEIMGLGTELNVRTFDMSANAFLREISLKCPQYTDDEKRPVYI
ITTLDNTTDDLLTLEYIKADINGPEFKTTYKNVEQLIKVNFSSLDIHLHTEALLSTMSFL
TSLVPQSERKEMDQPVQDSEEEKREEQKKTTIKKSKYDDVVNLHVCAELSCLRVFIRGQK
CRISEISIEGLDSQVVITKKATEVLAKLKNIAILDCDPEANFKKAVCIKGKEFFSFKMVS
YVGATEGDAYRDMSVVDSHITLNVGCIQVIFVNKFVSAILAFINNFQATKQALAEATVHA
AEKAASGVKELAQHSFRLALDIHVKAPVVIVPQSSKSSQVLVADLGLITVNNKFSIVIPK
SHSNLPPVIDSMMINLSELKMYRTVYENGSLQSELQLLQPVNLDITIERNLAADWYHDVP
DIKIIGHLKPMNLILGQEDLTLILQTLNENLGETSELFPAESDDETLVSGDNSSSHSAGT
TVVTAAVVETYSPVKIKTTLKLDFQFDSLTLNLYSGKTFVLQGSVHERDSSLKLAEFKLG
LISLAVKMSSDGTVNAAVKLTNCLLDDKRQSVQKATPRMLEMKVGTEKNVMVDVSYKQGR
EGTILDVTVRDVYLCASMEFLLTVADIFLKASQQSSKAEKSIKQTSAPVKESAPTQQVSK
MEMNVVVKNPEIVFVADLSRADAPALVVTTQCELCIKTSPEMQNMTAAVKDLHMKACPFL
SDQRAGKITTILQPCDLFFQSIQSNSGPQMIELSIKSLMLKVSPVIINTVITITSAISSN
KEAVSEVTSPVSPDLWKKKNLKDLKMWFFEESKESENKPEESSNMVLTGETLKMSIESII
VTLEAGVGHRTLPMLLAKSSFSGNVTNWSTLINLYCQLELEVHCFNEMFGVWEPLVEPLE
VDKTDSFRPWNLGVKMKKKAREQICEPDGEEENYKIPEYITAISIFSKDHLNITLSKCGM
ATLGNLANAFTDAASKKCDACKIDQAPFVVKNYLGLLVSVSPSDSFKPLNSAAGSKKIDL
HDGECLDMDYVQSKSQTDQFSAMTSLSSKHFYIQLTPLDHSHTDKIPLTKVGRSLYCVRH
LVSGIERYIVCQVDSVEGTKCITIRSPLQIRNHFSIPIGIYEEGVCLGTASPEDEFNIPL
ASYRSVLCFKPVQEKKYEMSEGVSFEDVIKNDGLLLNMKCQSATSKKDSLKLNIVPVKDI
VMSSDHTNEGWHLPYVVHLWPTVVLRNLLPYQIKFSLQGVDVDATLVDDGCSTQIHNAAL
DNTKLKLQLLNYTDQGWTAEYHIQSKQQDIHFINFRCVAELDKSELDIAVHVTYTTGQTI
IALHSPYWMVNKTGRMLQYKADDIHRKHPADHKKPLLFSFKPKNFLQNNKVQLMITDSEL
SDPFSLDTVGSHGAVKCKSKKLDYQVGVTIYASSFNLTRIVTFTPFFMVANRSNYTLSVA
EEGSEKCITVSTEQCVPFWPENSNNKLIVQVEGSKAAPKKIYFNKQDNSTLLYLGDQFGG
ILVDVTLRDHSTVITFSDYHAGAAPFLIINDMKSETVTFFQSSVNEEKDCLPPGKAVLYA
WKDPTSERKLTWICRKSQGEVSQTEDRVEYLRLEDTSVYLVSFLEGLQRILLFTENESVF
NVTFDNQKAELAEQEIIISLSNIGISLVNNYTKQEVSYIGITNSDVVWETKKKSRWKPLS
IKQTEKLEQAFKEYTESSPTDTKIVALDTNCQVCLTPDFSGMKFIQPTTDPIRRSFLPAL
KLEYSASAHQTSIRLQVYRIQIQNQNPAAIFPFVFYPVKPPKSVTLDSEPKPLTDVSIVM
RTAGHSEISRIKYFKVLIQEMDLRIDLGFLYALADLFSQSGDVPKDQAIELFKKDVESFQ
TELSAVSSTDTSSISVYEYFHISPIKLHLSFSLSTGGDDGNKEQRDKELIPVQSLNLLLK
SIGATLTDVQDVVFKLAYFELQNQFYTTQELQWEVIRHYSKQAIKQMYVLVLGLDVLGNP
FGFFRDLSEGVEAFFYEPYQGAIQGPEEFVEGMALGVKALVGGAVGGLAGAASRITGAMA
KGVAAITMDEEYQQKRREAMNKQPSGIREGITRGGKGLVSGFVSGITGIVTKPIKGAQKE
GAAGFFKGVGKGLVGAVTRPTGGIIDMASSTFQGIKKATDSSDDVESLRPPRFIHEDGVI
RPYRMREGAGSQMLQKIENGRFAKCKYFAHAMVNSSDLLMVMKSGVLFVTRGTFGQLTCE
WQYSFDEFTKEPFIVSGRRLRIEAKERVKSVFHAKEFGKIINFRTPEEAKWILCKLEEVR
DAQTKT
NT seq
9561 nt
NT seq
+upstream
nt +downstream
nt
atggtgtttgagtccttggtcgtggatgtgctgaaccgcttcctgggggactatgttgtg
aatcttgacagttcgcagctgaaactcggcatatggggaggagcagtagcactaaagaat
cttgaaattaaagaaaatgcgctgagtcagctggatgtgccatttaaagtaaaagctggc
catattggaaagcttgatttaaagatcccctggaagaatttgtacactcaacctgtggaa
gcggttttggatggagtctacctgcttatagtgcctactgccagtataaaatatgatgca
gagaaagaagaaaaacagtccttggaagcaaaacaacgggaacttcagcgcattgaagaa
gcaaagcaaaaggttgctgatcaggaaaaaccaaaagaagaaaaacaggacacatttgtt
gagaagctaataactcaggtcattaagaatcttcaagtgaagatttccaacattcacatc
cggtatgaagatgatatcacaaatcctaagtgcccactatcgtttggagtgtcgcttcaa
aaccttagtttgcagacgtcggataaaaattggaatccatgcttacatgatgaatcagcc
aagttattttacaagcttgtacgccttgataacctgtttgcctactggaatgtgaaatca
gatatgttttaccaccgaagttatgacacagctttggaaattttgaaatatggtattgct
gcacgcaacaccattcctgaaggctatgattttgtgttccgtccaatttcaggaagagca
aaactccgtatgaaccctcgttctgatgttgacttttcctcaccaaaaattgacttggat
gtaaatctccaggacatagcaattgattttaataaacctcagtaccacagtgtaatggaa
ctcttagagtctattgacttgatgtccagaaatttaccataccggaaatttcgtccagat
gtttgtgttgccactaatgccccaatatggtggaagtatgccataactagcatattggaa
gtcaacataaaaccaagacttcatatgtggtcatggaaacgtattagaaaacacaggctg
caagtcaagaaatataaggaattgtacagaatgaagataacgtcaaagaagccttcagag
gaagttctttccaaaactgaggaatatgaaaaagcgttggatatatttaacataacatta
gcaagacaacaagctgaaatggaggcatgcaaagctggtcttaaaatctacaggcctggc
tcaaaagatgaggattgcaattccaagggatggtttggttggatgtggggctggtctggg
gaaactgctgagaaaaaagaggatttcaaatctggaagtcttgaaggactgatgtcacct
gaggagaaagtaaggctctatgcagccattggatacagtgaaacagctgttgacccaact
ttgccaaaaacatacgaagctatgcgtctctgtgtcaagctgctaagcatgtcaattcaa
ttacgagaagataagggaaaaacagaattgatcaactttgccataactgatctgagcaca
gtgttaaaacagcgcccaggagcacaagcaattaaatttgaagcacagattggcactttc
gaagtgacgggcacaccccaggaaaagtcagtgccttgtgtcttgtcttctcgaaatctg
attgaaaataatatttcgctattgagccttatgtttgaaaccaacccactagatgagcgt
gcagaccaaaaactccaagtggagtcccagcctctagaaataatatatgatgcaaaaacc
atcaacaatttggtagatttttttcgacctccacaagatgtacatcttgagcaactggcc
tctgccacaatgacaaaacttgaagaatttcgggacagaacatcaacaggattactgtat
gtcattgaaacacaaaaggttcttgatttaaaaattaacttgatggcttcatatatcatt
gttcctgaaaatggattttatgagcaatcatcaaacttacttcttttggaccttggtagt
ttgaagatggtcagcaaaagtcgctcacaccttccccaactgaaaataggacagagcagc
attgaagatattatgtcacgagcatatgatagtttcgatgtgcaacttagcaaaatgcag
ctgctttatagaaaaaacaatgaagactggaagaaggcccgcaatctgaaacgttcatcc
ctgcatattctagagccaatggatctaaaggtggaattcagcagagcaatggttgttact
gatgccaggatgccgaaatgtaaactgtctggagaacttcctatactttccattcagatc
tctgaccaaaaactgaagggtgtgttggaactgatagacagcattcccaaacccgaaagt
cctcctgaaccatatccttccccccaaaaaattgctatacaaaaatcaacttcagtagtg
aatactcctcaactggcaccaagaagacccgctattgtggaccttccttctcttattgag
tctgaatctgaagaagagttctatgatgctcctacaagcccagtggatgaaaagccattt
tttgaggtgtctagtggggcagtggctaggacagacagtctgagaaaaaagaagttaaaa
agacaggagactcagaaaaatatgactgaatttcagatgagatttgagatcccaactgtt
acaatacagttatgcagcttgtcaaaagatgttgaaaagactgttttgcacctggagata
atgggattaggcactgagctgaatgttcggacatttgatatgtctgcaaatgcttttctg
cgagagatctccttgaaatgtccacagtacacagatgatgaaaagagaccagtttatatt
attacaaccttggataacactacagatgatctgttaactttggagtacataaaggctgac
ataaatggaccagaattcaagactacttataaaaatgttgaacagcttataaaggtgaac
ttttcttctttggatatacatctgcacactgaagctcttctaagcacaatgagcttccta
acaagtcttgtcccgcagtctgaaaggaaggaaatggaccagcctgtccaagattcagag
gaggaaaaaagggaagaacaaaagaaaacaacaataaaaaaatctaagtatgatgacgtt
gtaaatctacatgtgtgtgcagagctgtcctgtcttcgtgtttttatccgcgggcagaaa
tgtaggatttcagaaataagtattgaaggacttgactctcaagtggtaattacgaagaaa
gcaacagaagttttagcaaaattgaaaaatattgctatcctagattgtgaccctgaagcc
aattttaaaaaggctgtttgcattaagggaaaagagtttttcagctttaaaatggtgtcc
tatgtaggtgctactgaaggagatgcttacagagatatgagcgtggtggacagccatatc
acactaaatgttggatgcatacaagtcatttttgttaataaatttgtttcagcaattttg
gcttttatcaataactttcaagctactaagcaagcccttgctgaagccacagtacatgca
gctgagaaagcagcatcaggagtgaaagagttagcccagcacagcttccgtttagccttg
gatatccatgttaaagcgcctgttgttattgtaccacagtcatcaaaaagttcccaagtc
cttgttgctgatcttggtctcattacagtgaataacaaattttcaatcgtaataccaaaa
agtcacagtaatctacctcctgtgattgactccatgatgataaacctgagtgaactgaag
atgtacaggactgtatatgagaatggatcattacaatcagaattacaactgttgcagcca
gtgaacttggacatcactatcgaacgcaatttggcagctgattggtaccatgatgttcct
gatattaaaattattggacatcttaaacctatgaatctaatacttgggcaggaagatttg
actcttatactccaaacgctgaatgagaatttaggagaaacctcagaactatttccagct
gaatcagatgatgagactttagttagtggggacaacagtagttcccactctgcagggaca
actgtagtaacagctgctgttgtggaaacatatagccctgttaaaatcaaaacaacacta
aaattggacttccagtttgattcgctcacattaaatttgtacagtggcaaaacatttgtg
ttgcagggaagtgttcatgaaagggacagtagcctaaaacttgctgaatttaaattaggt
ttaatatctttggctgtcaaaatgtcttctgatgggactgtgaatgctgctgttaaacta
acaaactgcttactggatgataagaggcaaagtgttcagaaagctacacccagaatgtta
gaaatgaaggtcggtactgagaaaaacgtcatggttgatgtcagttacaaacaagggaga
gagggtaccatactagatgttactgtacgtgacgtctacttgtgtgctagtatggagttt
cttcttactgtagcagacatttttttgaaagcgagtcagcagagttccaaagctgagaag
agtatcaagcagacgtcagctcccgtaaaggaatcagctcctacacagcaagtctcaaaa
atggaaatgaatgtagtggttaaaaatccagaaattgtttttgtggccgatttatcaaga
gcagatgcaccagcactagtagtgactacacagtgtgagctctgtataaaaaccagccct
gaaatgcagaacatgacagctgcggttaaagacttacatatgaaagcatgtccctttctg
tctgaccaacgtgctgggaaaatcaccactatactgcaaccatgtgatttgtttttccaa
agcatccagtctaatagtggtccacaaatgatcgagctttctatcaagtcacttatgtta
aaggtttctccggtaattataaacacagtcatcacaatcacatcagcaatatcttctaat
aaagaagcagtatctgaagtgacaagccctgtttcaccagacctttggaaaaagaagaat
ttgaaagatttaaaaatgtggttttttgaagaatcgaaagaaagtgagaacaaacctgag
gaatcttctaacatggttttaacaggggaaaccctgaaaatgagcattgagtcgatcatt
gtgactcttgaagctggtgttggtcacagaacattaccaatgcttttagcaaagtcgtca
ttttctggaaatgtaacaaactggagtactctaataaacctttactgtcaacttgaacta
gaggtgcattgctttaatgaaatgtttggtgtatgggagccattggtggaaccacttgaa
gttgataaaactgatagtttccggccatggaaccttggcgttaagatgaaaaagaaagca
cgggagcagatttgtgaaccagatggagaagaagaaaattacaaaattcccgaatatata
actgctataagcatattttccaaagaccatttaaacatcaccctttctaagtgtggtatg
gcaacactaggaaatttggcaaatgcttttactgatgcagccagtaaaaaatgtgatgct
tgtaaaatagaccaagctccatttgtggtgaaaaactatctaggactgctcgtctcagtg
tctcccagtgactctttcaaaccattaaattctgctgctggatcaaaaaaaatagaccta
catgatggtgaatgtcttgatatggattatgtgcagtccaaaagccagacagaccaattt
tctgcaatgaccagtctcagcagtaaacatttctatatccagctaacacctctggaccat
tctcataccgataagataccattaaccaaagtaggccgaagcctatattgtgtccggcat
ttagtgtctggaattgaaagatacattgtgtgccaggttgattctgttgaaggaaccaag
tgcataaccatacgttctccattacagataagaaatcatttctcaattcccattgggata
tatgaagaaggcgtgtgtttagggactgcctccccagaagatgaatttaatattccatta
gcttcctacagatcggtgttgtgctttaagccagtgcaagaaaaaaaatatgaaatgagt
gaaggtgttagctttgaagacgtcattaaaaatgatggcctgctgctgaatatgaagtgc
cagtctgctacatctaaaaaggattccctcaagctaaacattgtgcctgtaaaggacatt
gtcatgtcatctgatcacaccaatgaagggtggcatttgccatatgttgttcatttatgg
ccaactgtagttcttcgtaacttgctgccttatcagattaagttctcattgcagggtgtt
gatgttgatgcaactttagtagatgatggctgcagtacccagattcataatgcagcctta
gacaacaccaagttgaagttacaattgctgaattatactgaccagggctggacagcagaa
taccatatccaaagcaagcaacaggacatccactttataaacttccgctgtgtagcagaa
ctagacaagtcagaactggatattgctgtccatgtgacatacactacaggtcaaacaatt
attgccttacatagtccatattggatggtaaataaaactgggaggatgctgcagtacaaa
gctgatgacattcacagaaaacatccagctgatcacaaaaaaccactgcttttttcattt
aagccaaagaactttttacagaataacaaggtgcaactcatgataacagacagcgaatta
tctgatccattctctctggataccgttggtagtcatggtgctgtgaagtgcaaaagtaaa
aaattggattaccaggttggtgtcaccatttatgcaagcagtttcaatcttaccaggatt
gtaactttcactccattttttatggttgcgaacagaagtaactataccttatctgtggca
gaggagggctcagaaaaatgcataacagtcagcaccgagcagtgtgtccctttttggcct
gaaaatagcaacaataaactgattgttcaagtagaaggctcaaaagctgctcccaagaaa
atatattttaacaaacaagataattctactcttctttatctgggagatcagtttggagga
atactagtggatgtgactctcagagatcattctacagtcatcaccttttcagactaccat
gcgggtgctgctcccttccttattatcaatgatatgaagtctgagacagtaacattcttt
cagagctctgtcaatgaagaaaaggactgtcttcccccaggcaaagctgtgttatatgct
tggaaagaccccacaagcgaacgaaaattgacctggatttgtcggaaaagccagggtgaa
gtctctcaaacagaagatagagttgaataccttcgccttgaagacacatctgtgtactta
gtgtcctttctggaagggctgcagagaattttactttttactgagaatgagagtgtgttt
aatgtgacctttgacaatcagaaggcagagttagctgaacaagaaatcattatatcattg
tcaaacattggtatttctttagtaaataattacacaaaacaggaagtttcctacattgga
attacaaattcagatgtagtctgggaaaccaaaaaaaagtcaagatggaagccactaagt
ataaagcagacagaaaaactggagcaagccttcaaagaatacacagagtctagtccaaca
gacactaagatcgttgcactagataccaattgtcaggtttgcttaacaccagatttttct
ggaatgaaatttatacagcctaccacagatcctattagaagaagttttctgccagctttg
aagctagaatattctgcatccgcacatcagacatctatcagattgcaggtgtacaggata
cagattcagaaccaaaatcctgcagccatatttccctttgtattttacccagttaaacct
ccaaagtcagtaacgctggactctgaacccaagccattaactgatgtcagtatagtgatg
agaactgctggacattcagaaatttcacgtataaagtatttcaaagttttgattcaagaa
atggatctcaggatcgaccttgggtttctgtatgcccttgctgacctgttttcgcaaagt
ggagatgtaccaaaagatcaagcgattgagctcttcaaaaaagatgtggagtcttttcaa
acagaattaagcgctgtttcatcaactgatacatctagtattagtgtgtatgagtatttt
catatttctcctataaagttgcatttaagcttttctctaagtactggtggagatgatggt
aataaggaacaaagagacaaggaattaattcctgttcagtctctgaaccttctgctgaag
agtattggagctacccttacagatgtccaggatgttgtatttaagctggcatattttgaa
cttcagaatcagttctatacaacgcaagagctgcaatgggaagtcattagacattattcc
aaacaggcaattaaacaaatgtatgtgctggtcctcggcctggatgtgctgggtaatcca
tttgggtttttcagagatctgtctgaaggagttgaagcatttttttatgaaccgtaccag
ggtgcgattcaaggtcctgaagaatttgttgaagggatggcacttggggtcaaggctctt
gtgggaggcgcagttgggggtctggctggtgcagcatcccgcatcacaggtgctatggca
aaaggtgtagccgctataaccatggatgaggaataccaacagaaaaggagagaagccatg
aacaaacagccaagtggtattagagaaggcattacacgaggaggaaaaggcttggtctca
ggctttgtcagtggtataacaggaattgttacaaaaccaatcaaaggtgcccaaaaggaa
ggtgcagctggattctttaagggtgttggcaaaggattagttggagcagtcacaagacca
actggcggaattatcgacatggccagcagtacattccagggtattaaaaaagctacagat
tcttctgatgatgtcgaaagtctgcgtcctccacgatttattcatgaagatggagttatt
cgaccatacagaatgagagagggtgcaggaagccagatgctacagaaaattgaaaatgga
agatttgccaaatgtaaatattttgcacatgcaatggtcaatagttcagacttactaatg
gtgatgaaaagcggagttctatttgttacaagaggaacgttcggccaactcacatgcgaa
tggcaatacagttttgatgaattcaccaaagagccttttattgtaagtggccgaagacta
cggattgaagcaaaggaacgagtaaaatctgtgtttcatgccaaagagtttggaaaaata
attaatttcaggaccccagaagaagccaagtggattctgtgtaaactggaagaagttaga
gacgcccaaaccaaaacctga
DBGET
integrated database retrieval system
