Xenopus tropicalis (tropical clawed frog): 100489231
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Entry
100489231 CDS
T01011
Symbol
cacna1b
Name
(RefSeq) voltage-dependent N-type calcium channel subunit alpha-1B
KO
K04849
voltage-dependent calcium channel N type alpha-1B
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04010
MAPK signaling pathway
xtr04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
100489231 (cacna1b)
04020 Calcium signaling pathway
100489231 (cacna1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
xtr04040
]
100489231 (cacna1b)
Ion channels [BR:
xtr04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
100489231 (cacna1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Ca_chan_IQ
GPHH
PKD_channel
Motif
Other DBs
NCBI-GeneID:
100489231
NCBI-ProteinID:
XP_031746887
UniProt:
A0A8J1IMU9
LinkDB
All DBs
Position
8:4313505..4444340
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AA seq
2250 aa
AA seq
DB search
MEDDTEPYFIGIFCFEAGIKIIALGFVFHKGSYLRNGWNVMDFVVVLTGILATAGTDFDL
RTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAMVPLLQIGLLLFFAIVMFAIIGLEFYMGK
FHKACFSDDSDEPVGDFPCGEEPPARLCENGTFCRVYWKGPNFGITNFDNILFAVLTVFQ
CITMEGWTDILYNTNDAVGYMWNWLYFIPLIIVGSFFMLNLVLGVLSGEFAKERERVENR
RAFLKLRRQQQIERELNGYLEWIFKAEEVMLAEEDKNAEEKSPLDVLKRATIKKSKNDLI
HAEEGDDHFNDICSVGSPFARSSLKSGKNESSSYLRRKEKMFRFFIRRMVKAQSFYWFVL
CVVALNTLCVAIVHYNQPQWLTEALYYAEFVFLGLFLTEMSLKMYGLGPRNYFHSSFNCF
DFGVIVGSIFEVIWAAVKPGTSFGISVLRALRLLRIFKVTKYWNSLRNLVVSLLNSMKSI
VSLLFLLFLFIVVFALLGMQLFGGQFYFEEETRNTNFDTFPTAILTVFQILTGEDWNLVM
YFGIESQGGVSKGMFSCIYFIILTLFGNYTLLNVFLAIAVDNLANAQELTKDEEEMEEAT
NQKLALQKAKEVAEVSPMSAANLSITAFVKQTQGAISRSSSVSNVNSPDPSVCSAVIKTQ
LPAYPSAWELAPSCARHLHAMDPCKQQNSTKCRSVWEQRTSQIRKHNFRASCEALYSELE
PEDRLRYATTLHLRPDMKSHMDRPLLVEPQDSTETKDGSPDAPAPNEIEPVPGVTTEPSA
RKQHRHRDRGEPNGGGRENGNHNGDSGSNDREERQRQHRSRSKEEDGSKETGRGERNRSQ
ERGKRHHRRASPEDGTEREHRRHRTHRHSADRQGKEGNGQPPSGGKGERKSRHRGGGSRS
GNREGEGTNRGTGENGEEPPRSRHRNRHKALSTYDTEDKKENKDGESAEKEHRNHRPREN
RNESELPPGGLQQLAEQPEDADNQKNVNRMALPHPERSSTINIPVTITAPPGESAVIPIN
NVDFDGKSEEKKEMEDDLTKNGPKQILPYSSMFIFSTTNPVRRLCHYIVNLRYFEMVILV
VIALSSIALAAEDPVQADAPRNDVLKYMDYIFTGVFTFEMVIKMIDLGLLLHSGSYFRDL
WNILDFIVVSGALVAFAFSSFVGGNKGKDLNTIKSLRVLRVLRPLKTIKRLPKLKAVFDC
VVNSLKNVLNILIVYMLFMFIFAVVAVQLFKGKFFYCTDESKDLEKDCRGEYLNYENNDV
RAQAREWKKYEFHYDNVLWALLTLFTVSTGEGWPNVLKHSVDATYEDQGPTPGFRMEISI
FYVVYFVVFPFFFVNIFVALIIITFQEQGDKVMSECSLEKNERACIDFAISAKPLTRYMP
QNRQSFQYKMWRFVVSPPFEYFIMVMIALNTIVLMMKFYGAPQTYEDMLKCLNIIFTSMF
SLECILKIIAFGVLNYFRDAWNVFDFVTVLGSITDILVTEIADTENFINLSFLRLFRAAR
LIKLLRQGYTIRILLWTFVQSFKALPYVCLLIAMLFFIYAIIGMQVFGNIALSDDSSINR
HNNFRTFFQALMLLFRSATGEGWHEIMLSCLSNRPCDPRSGNTKEECGSDFAYFYFVSFI
FLCSFLMLNLFVAVIMDNFEYLTRDSSILGPHHLDEFIRVWAEYDPAACCRIHYKDMYNL
LRVIAPPLGLGKRCPSRVAYKRLVRMNMPISDTDLTVHFTSTLMALIRTALDIKLASGGI
KQHECDAELRKEVSSVWPNLSQKTLDLLVPPHKPDELTVGKVYAALMIFDFYKQNKNNRD
QSHPQSGVLSQTGTVSLFQPLKATLEPFGNSKMFIRQKSSASLNNGGLVPDQDMGIRESS
SWGTQPATDPFSTPRSTAFQRGHSEEIHAQRNGKQSVEMKQIGQTLSNGGEHPTGLESQG
RAVSMPRLAAETHPRSRAPSPGNGYLPSIPDTSPMKRSVSTLTPPQRAQLYEYSLERVPP
ERTHQHHHRCHRRKERKQKSTERSPQSEDADAPTRDRKHERGRSQERKQQPPSSSEKQRF
YSCDRYGSRDSGHPRQCDHSRATSPSAGQDHSTHRQGSGSASGSPRLTSSGASTPCRGIR
RQLPQTPLTPRPSVTYRTAHSSPVHFGGPAYSPGRLSRGLSEHNTLLYSDSPSHSACTVT
RIGSDPYLGPRQDSDSYCPLSEETLTFEEALASNSGRSSRTSYVSSLTSHSHQLCRVPNG
YHYTLGLSTGPATAPRGRSYYHEADEDDWC
NT seq
6753 nt
NT seq
+upstream
nt +downstream
nt
atggaagatgacacagagccatactttattggaatattctgcttcgaggccggcatcaaa
attattgccttgggctttgttttccataaaggctcctacctccggaatggctggaacgtc
atggacttcgttgtggtgctgactgggatcctggcgacggcggggacagactttgaccta
cggacgctccgggcagttagagtgctgagacctctaaagctggtgtctgggattcctagc
ctacaggtggtactaaagtctatcatgaaggcgatggttccgttacttcagatcgggtta
ctcctcttcttcgccatcgtcatgtttgccattattggcttggagttttatatgggcaaa
ttccacaaggcctgcttttctgatgactcagatgagcctgtaggagatttcccctgtggg
gaagagccgccggcccgactgtgtgaaaacgggacattctgtcgggtttattggaaggga
ccgaatttcggaatcacaaactttgataacatcctattcgctgtcctgaccgtgttccag
tgcatcactatggagggatggaccgacatcctgtacaacacaaacgacgccgtgggttac
atgtggaactggctctattttatcccactcataattgttggctctttcttcatgctgaac
ctggttctgggtgtcctctcaggggagtttgctaaggaacgagagcgagtagaaaatcgt
cgtgccttcctcaaactccgccgtcagcagcaaatcgagcgagaattaaatggctacctt
gagtggatcttcaaagccgaggaagtcatgttggctgaggaggacaagaacgcagaggag
aagtcccccttagatgtactcaagagggcaaccattaagaaaagcaaaaacgaccttatc
catgccgaggagggggacgatcatttcaatgacatctgctcagtgggttcacccttcgcc
cgttcaagcctgaaaagcgggaagaacgagagttcttcctaccttcgccgaaaggagaag
atgttcaggttcttcatccgccggatggtgaaagctcagagtttctattggttcgtcctc
tgtgtggtggcgcttaacactctctgcgtggccatagtacactacaaccagcctcagtgg
ctcaccgaagccttgtattatgcagagtttgtgttcctgggactcttcttgacggaaatg
tccttaaagatgtacggtctgggaccccgcaattatttccactcatccttcaactgcttt
gattttggcgtgatagttggaagtatttttgaggtcatatgggctgcggtgaaaccagga
acttcctttggcataagtgtccttagagctctgcgacttcttcgcatctttaaggtgacc
aagtactggaactccctaaggaatctggttgtgtctcttctcaactccatgaagtccatc
gtcagcctccttttccttctgttcctcttcatcgtggtgtttgctctacttgggatgcaa
ctttttggaggacagttttattttgaagaggaaacccggaacacgaactttgacaccttt
cctactgcaatccttactgtgtttcagatcttgacaggagaagactggaatcttgtgatg
tatttcggcatcgagtcacaggggggcgtcagtaaaggaatgttctcgtgcatctatttc
atcattctgacactgtttggaaactatacccttctaaacgtcttcttggccattgctgtg
gataacttggcgaatgcacaagagctaaccaaggatgaagaagagatggaagaagccacc
aaccagaagctggcgctacaaaaagccaaagaagtggcggaagtcagccccatgtccgcc
gccaacctgtccatcacagcttttgtaaagcaaactcaaggtgcaatatctcggagctcg
tccgtctccaacgtaaattcaccggacccgtcagtctgttccgcggtcattaaaacccaa
ctcccagcatacccatcagcctgggagttggcgcccagctgtgcccgacatctgcatgcc
atggatccttgcaaacagcagaattcgaccaagtgtcgctccgtgtgggagcagcgaacc
agccagattcgaaagcacaatttccgcgccagctgtgaggccctctacagtgagttggaa
cccgaggaccgtctgcgttatgccaccaccctacacctaaggcctgatatgaagagtcat
atggaccggccacttttggtggaacctcaggactcaactgagacaaaagatggaagccca
gatgccccagctccaaacgaaatagaaccagttcctggtgtgactactgagccctcagca
cgtaaacagcaccggcaccgtgatcgtggagaacccaatggtggagggagagagaacggc
aaccataatggagattcaggaagtaatgatagagaggaacgtcaacgacaacataggagt
cgcagcaaggaagaggatgggagtaaggaaacgggaaggggggagaggaaccgcagtcag
gaaaggggcaagcgacaccatagaagggcttcccctgaggacgggacggagagagagcac
cggcgacaccgtacccaccgccattcagcagataggcagggcaaagaaggcaatggccag
ccaccctctggtggtaagggcgaaagaaaatcccggcacagaggcggcggttccagatct
ggaaacagagagggggagggaaccaacaggggaactggggagaatggtgaggaaccccca
aggtcacggcatcgcaatagacataaagcactctcgacttacgacaccgaagataagaag
gagaacaaagacggcgaatcagcagagaaagagcaccgcaatcataggccaagggaaaac
cgcaatgagtcggagcttccaccaggtgggttgcagcagttggccgagcagccagaagat
gccgataaccagaagaatgtcaaccgtatggctctgccccacccggagagaagcagcacc
atcaatattccagtgaccatcacagcgccccctggagaaagtgccgtcatccctatcaat
aatgtggatttcgatgggaagtctgaggagaagaaagagatggaagacgacctgaccaag
aatggtcccaagcagatcctgccgtacagttccatgttcatctttagtaccaccaatcca
gtgcgccgtctctgccattacatcgtcaacctgcgctacttcgagatggttatcctggtc
gtgattgcgctgagcagcattgccctggcggcggaagatcccgtgcaggccgacgcaccc
cgcaatgatgtgctaaaatacatggattatatttttaccggagtcttcacttttgagatg
gtgataaagatgattgaccttgggctgctgcttcattccggatcctattttagagacctt
tggaatattttggatttcatcgtggtcagcggtgccctggtggcttttgctttctcgagt
tttgttggagggaacaaaggaaaagacctgaacaccatcaagtcgctgagggttttgcgt
gttttacggccactgaaaaccatcaaacgcctacccaagctgaaggcggtgtttgactgc
gtggtgaactctctgaagaacgtcctgaacatcctgatagtttacatgctcttcatgttt
atctttgctgttgttgcagtccagctcttcaagggcaaattcttttactgcaccgacgag
tctaaggatttggagaaggattgcagaggggaatatctgaactatgaaaataatgatgtg
agagctcaggcaagagagtggaagaaatatgaatttcactatgacaacgtactgtgggcg
ttgcttaccctgttcacggtctccactggagaaggttggcccaatgtcctcaagcactca
gtagatgccacctacgaggatcagggtccgacgcctggtttcaggatggagatatcgatc
ttctacgtggtctattttgtggtgttcccgtttttcttcgtcaacattttcgtggctctg
atcatcatcacctttcaggagcaaggagataaggtcatgtcggagtgtagccttgaaaag
aacgagagggcctgcatagactttgccatcagtgctaagcccctcactcggtatatgcct
cagaaccgccaatcctttcagtacaagatgtggagatttgtcgtgtcccctccgtttgaa
tactttattatggtgatgattgctctgaacaccatcgtgctcatgatgaagttttatggg
gcccctcaaacctacgaagacatgttgaaatgcctcaatattatcttcacctcaatgttc
tctctggaatgtatcttaaagataattgcctttggggtactgaactatttcagagatgcc
tggaatgtgttcgactttgttacagtgctgggaagtatcactgatattttagttacagag
attgcggacacggaaaacttcatcaacttgagcttcctgcggctattccgagccgcccga
ctgatcaaattgctacggcaaggttataccatacgaatccttctctggaccttcgtgcag
tcttttaaggccttgccatacgtctgcctcctgatcgccatgttgttcttcatctacgcc
atcatcgggatgcaggtgtttggaaacattgcactgtccgacgatagctctataaaccga
cacaacaacttccgtaccttcttccaagcactgatgctcctcttcaggagtgccaccggt
gagggctggcatgaaatcatgctgtcttgcctcagtaaccgcccctgtgaccctcgctcc
ggcaacaccaaagaagaatgtggcagcgacttcgcatatttctattttgtctctttcatc
ttcctgtgctctttcctgatgctgaatctttttgttgctgtcattatggataattttgag
tatctgacgagagactcttccatcctgggaccacatcatcttgatgagtttatcagagtc
tgggcagagtatgatccggctgcttgctgccgaattcactataaggatatgtacaattta
ttgcgtgtaattgcccctccgctggggctggggaaacgctgcccatcgcgggtggcttac
aagcgcctcgtaaggatgaatatgcctatttctgacacagacctgactgttcatttcacc
tcgactttgatggcattgattcgaaccgctctggatattaaattggcttcaggtggaatt
aaacaacatgaatgtgatgctgaactgaggaaagaagtctcatctgtgtggcccaacctc
tctcagaagactctggatcttctggtaccacctcataagcccgatgaactgactgttggg
aaggtctacgctgccctaatgatctttgacttctacaagcagaataaaaacaaccgtgat
caatcccacccacagtctggtgtcctttctcagactggtacagtctcccttttccagccg
ttgaaagctactttggaaccatttggaaattccaaaatgtttatccgtcagaagagctca
gcttctttgaacaacggtggtttggtgccagatcaagatatgggtattcgagagtcaagt
tcttggggaacccaacctgctacagatcccttttctactccgaggagcacagccttccag
agaggtcactcagaggagatccatgcacaaagaaatggcaaacagtctgtagagatgaag
caaatcggacagactctgtctaatggaggagaacaccctacgggcttggagtctcagggt
cgtgcagtttccatgccacggctagcagctgaaacccacccgagaagccgtgctccttcc
cccggaaatggttaccttccctcgattcctgataccagtccaatgaagcggtcggtttcc
accctgactccgccacagcgagcacagctgtacgaatactctctagaaagggtaccaccc
gagcgcacccaccaacaccatcaccgttgccaccggcggaaggagagaaagcaaaaatct
acagagagatcaccacaaagtgaagatgcagatgcccccaccagggacaggaaacacgaa
agaggacgatcccaagaaaggaaacagcagcctccatcttcgtcggagaaacagcgcttc
tactcctgtgaccgatacggaagccgcgactccgggcaccctcgtcaatgtgatcacagc
cgggcaacgtcgcctagtgcgggacaagaccacagcacgcacagacaggggagtggttca
gccagtggaagtccacgactcaccagttcaggtgctagcaccccgtgccgggggatccgg
aggcaactcccccagactcctcttactcctcggcccagtgttacataccggacagctcac
tcctcccctgtgcactttggggggcctgcttattccccagggcgtctaagtcggggttta
tcagagcacaacactctactgtacagcgattcccccagccactcagcctgcactgttact
cgcattgggtctgacccctacttaggaccacgccaggatagcgacagttactgtcctttg
tcagaggagacattaaccttcgaggaagccttggccagcaattctggacgttcatcccgg
acttcctatgtgtcttctctgacctcacattcacaccagctctgcagggtaccaaatggt
taccactataccctggggcttagcactgggcccgccacagctccaagaggccgaagctac
taccatgaagcagatgaggatgactggtgctag
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integrated database retrieval system
