Xenopus tropicalis (tropical clawed frog): 100489549
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Entry
100489549 CDS
T01011
Symbol
lingo4
Name
(RefSeq) leucine-rich repeat and immunoglobulin-like domain containing-NOGO receptor-interacting protein 4
KO
K23533
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xtr04131
]
100489549 (lingo4)
Membrane trafficking [BR:
xtr04131
]
Endocytosis
Lipid raft mediated endocytosis
RhoA-dependent endocytosis
100489549 (lingo4)
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Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_1
I-set
Ig_3
LRR_9
ig
LRR_14
LRR_5
Ig_2
V-set
Ig_6
LRR_At5g56370
Motif
Other DBs
NCBI-GeneID:
100489549
NCBI-ProteinID:
XP_017945786
Xenbase:
XB-GENE-6464195
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Position
8:complement(143620213..143631400)
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AA seq
626 aa
AA seq
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MVAGRNTPIPSLHLEPRLFIMCVGVLMRALCSCCPTPCECPSPCECPARDNSTLCRRRFL
SIVPSDLPTFSQILDLSHNYIRAVPSNAFTHLKYLQELDLSYNQLSRVEPGLFSSLPALR
VLLLHHNELKLLPPGIFLGMPALSWLDVRRNQLVILLDQTFQGLRELKHLETGENPLLFV
SPGAFLTLPQLQRLGLEDTKLNGVPSSALAALPRLSELRLGGISSSVLRDLSFPDLPLLR
VLELDSWPSLGLLEPHSLSGLNLSSFSVTHGNLTTIPEEALKAQIYLRTLDLSYNPISEL
PARGFGTLRRLEELRLSSGRLHYVPSGAFYGLGRLRTLDLSDNPLTWLAEDALPSPLGGL
ETLLLSNTMLSCDCRLCWLLHRRLRFGGKSPVCAAPDSLRGMVIPDDPEKLCPDLFTCQP
PRIVNPGPRELTVREGDVLTISCHSLGVPQPSIQWVLPQSPPLEDTSTTACPTTYNVSPQ
TVFPTTQETADSGVPTPAMPAVRRVTILPDDALQFHPVQAEDSGAYLCTASNVVGNDSTW
VHLEVVPYNGSNVPSSVMAVNGRLLVVITAGGILPFISSVTLCFIFMFLWSRGRGNIKHT
AHIDYVPRGNRASTDTEDNKFTMKLL
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atggtagcgggaaggaatacgccaattcccagcctccacctggagccccgactctttatc
atgtgtgttggagtgttaatgagagccctctgctcttgttgccccaccccctgtgagtgc
ccctccccctgtgagtgccccgcccgtgacaattccaccctttgccgacgccgtttcctg
agtattgtcccctcagatctcccgacgttttctcaaatactggacctcagtcacaactac
atcagagcagtgccgtccaacgccttcacgcacctcaagtatctccaagagttggacttg
agttacaatcagctttcccgggtggagccggggctgttcagcagtttgcctgccctgagg
gtcctgcttctccaccacaatgagctcaaactgctgccccctgggatcttcttggggatg
ccggccctgtcgtggttggacgtccgaaggaaccagttggtcatcttgctggatcaaacg
tttcaggggcttagggagctgaaacacctggagacgggtgagaaccccctgctctttgta
tctcctggagctttcttgacattgcctcagctgcagaggttgggtttggaggacaccaag
ctcaatggtgtcccctcgagtgctctcgctgccctaccgcggctttctgaactgcgcttg
ggtgggatcagcagcagcgttctccgtgacctctccttccccgacttgcccttactgcga
gttctagaactggacagttggccttcattagggctccttgaaccccacagtctgtctggt
ttgaatctcagctccttctccgtaacccatggaaatcttaccacgatcccagaggaagcg
ctgaaagcccagatttacctccggaccttggacctctcctacaaccccatctccgagctc
ccggccagaggtttcggcacactgaggaggctggaggagctgaggctgagcagtgggagg
ctccattatgtaccttctggggccttttacggcctgggccgactccgtacgctggacctt
tccgacaatccgctcacttggcttgcagaagacgccctaccttctcctcttggaggcttg
gagaccctcctcctctctaataccatgctgtcctgcgattgccggctctgttggctcctc
caccgtagacttcgcttcggagggaagtcccccgtctgtgcggctccagactcactaagg
ggaatggtgatccccgacgacccagagaaactttgcccggacctatttacgtgccagccc
ccgagaatagtaaaccctggaccccgtgagctgacggttagggaaggggacgttctgacc
atctcctgccacagtttaggagtccctcaaccttctatccaatgggtgctacctcaaagc
ccaccgttggaggacaccagtacaactgcttgcccaaccacctataacgtatccccacaa
acagtctttccgaccactcaggagacagctgactctggggtaccaacgcccgcaatgcca
gctgtccggagggtcaccatcctcccagacgatgcccttcagttccaccctgtacaagca
gaggactcgggggcttacctatgcacggccagcaacgtggttggcaacgactccacctgg
gtccacctggaagtcgtgccctataacggcagcaacgtgccctcctcagtgatggcggtg
aacggtcgcctcctagtggtcatcacagccggcggcattctgcccttcatcagctcggtg
acgctctgcttcatcttcatgttcctatggagccggggaagggggaacatcaaacacacg
gcccacatagactacgtgccacgggggaatcgagcttccaccgacacagaggacaacaaa
ttcaccatgaaactgctttga
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