Xenopus tropicalis (tropical clawed frog): 100489726
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Entry
100489726 CDS
T01011
Symbol
vps41
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog isoform X2
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04140
Autophagy - animal
xtr04148
Efferocytosis
xtr05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
100489726 (vps41)
04148 Efferocytosis
100489726 (vps41)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
100489726 (vps41)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xtr04131
]
100489726 (vps41)
Membrane trafficking [BR:
xtr04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
100489726 (vps41)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps41
Beta-prop_Vps41
zf-RING_Vps41
Clathrin
WD40_CDC20-Fz
Beta-prop_HPS5
Beta-prop_EML_2
ANAPC4_WD40
WD40_Prp19
zf_RING_Vps8_fungal
TPR_PEP5_VPS11
TPR_7
WD40_WDHD1_1st
Vps39_1
Beta-prop_IFT140_2nd
Beta-prop_WDR35_2nd
zf-C3H2C3
zf_RING_Vps8
Beta-prop_RIG_2nd
Ctr
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
100489726
NCBI-ProteinID:
XP_002932756
Xenbase:
XB-GENE-999710
UniProt:
A0A6I8RJM4
LinkDB
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Position
3:130738746..130775249
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AA seq
887 aa
AA seq
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MILLGAWYAGKCSFLLLLVIWTQFLKRTMAEKQEVVEAAEQEMSQGESTEESEEDESEEE
PKLKYERLLNGVSEILLEDAASCMTVHEKFLALGTHSGKMFLLDIQGNVTQKFDISSVKI
NQISLDESGEYVGICSEDGKVQVFGLYSREGLHEIFDCPIKIVAVHPQFGKSNCKQFVTG
GNKLLLYDRNWLNRWKTSVLHEGEGNITNIKWRGNLVAWANNMGVKILDITTKQRITNIP
RDDTSLRPDMYPCSLFWKDNLTLVIGWGKSVKVCFVKERHASELRDLPSCYVEIVTQFDT
EYYISGIAPLCDQFVMLFFVKETLDKSDKMLCARPRLDILQVHPDSSEEISSDAITVRGF
QENECRDYRLEYSEGESLFYIISPRDVVVAKERDQDDHIDWLLARKKYEEALMAAEISQK
NIKRHDVLDIGLSYITHLVEKRDYDMAARKCQKILGKNMKLWEDEVYRFKKIGQLKAISK
YLPRGDLRLRPAIYEMILDEFLKTDYEGFSTLIREWPGELYNSKTIVQALKGHLNKDPEN
RTLLKALAELHTYDQRYDEALNIYLKLRNKEVFDLIHKHNLFSSIKDKIVLLMDFDTEKA
VDMLLDNEDKISIEKVVNELQDRPELQHVYLHKLFKRDHHKGRKYHEKQISLYAEFDRPN
LLPFLRDSTHCPLEKALEICHQRNFVEETVFLLSRMGNSRKALQMIMEELKDVDKAIEFA
KEQDDAELWEDLILYSIDKPPFITGLLNNIGTHVDPILLIHRIKEGMEIPNLRDSLVKIL
QDYNLQILLREGCKKILVSDSLSLLKKLHRTQAKAVLVDDESICEACLSPILPSDASKPL
GVVAFHCRHTFHRDCLPVANTMSTLYFCNICCAKNRGPGSAILEMKK
NT seq
2664 nt
NT seq
+upstream
nt +downstream
nt
atgattcttctcggagcatggtatgctgggaaatgtagttttttgctccttctggtcata
tggacacagttcctcaaaagaacgatggctgagaagcaggaggttgtggaagctgcagag
caggaaatgtctcaaggagaatctacagaagaatcggaggaggatgagagtgaagaggaa
cccaagttaaaatatgagcgactactgaatggagttagtgaaatcctactagaagatgct
gcaagctgtatgacagtgcatgagaagtttctggcactgggaactcacagtgggaagatg
tttttacttgatattcaaggaaatgttacacagaagtttgatataagctctgtcaaaatc
aatcagataagcctggatgaaagtggggaatatgtgggcatttgctctgaggatggcaag
gtgcaggtgtttggcctttactccagagaagggctgcatgaaatattcgactgtccaatt
aaaattgttgctgttcaccctcagtttggaaaatccaactgtaagcagtttgtaacaggt
ggcaataagttgctgttgtatgatagaaattggttaaatcgatggaaaacctctgttcta
catgaaggggaagggaacataaccaacatcaaatggagagggaatcttgttgcttgggcc
aataatatgggagtcaaaatattggacataaccacaaagcaaagaattaccaatattccc
agagatgacacgagccttcgcccagacatgtatccttgtagtctcttctggaaggataac
ctcacccttgtaattggatggggcaaatctgtcaaggtttgttttgtcaaagagaggcat
gccagtgaattaagggatttgccaagctgctatgttgaaatagttactcagtttgatact
gaatactacataagtggaatagcccccctctgtgaccagtttgtcatgctgttttttgtg
aaggaaactttggataagtcggacaaaatgttgtgtgccagaccacgtcttgatattcta
caggtccatccagactcaagtgaggagatttcttcagatgccataaccgtcagaggcttt
caggaaaatgagtgtcgtgattatcgcttagaatactcagaaggagaatctttattctat
ataatcagtccaagagatgttgttgtggcaaaagaacgtgaccaagatgaccacattgac
tggctgttggctagaaagaagtatgaggaagctcttatggcagctgaaattagtcagaag
aacataaagcggcatgatgtcttggatattggattatcgtacataactcatttggtggaa
aaacgagattatgacatggcagcaagaaaatgtcagaaaatacttggcaaaaatatgaaa
ctctgggaagatgaagtctatcggttcaagaaaatagggcaacttaaggcaataagcaag
tatctgcccaggggagatttacgtctgagacctgcaatttatgaaatgatcttggatgag
tttttgaaaacagattatgagggattttcaacgctaattagagagtggccgggagagctg
tacaacagcaaaacaattgttcaagctttaaaaggtcacttgaacaaggaccctgagaac
aggactctattgaaggctctagcagaattgcacacctatgatcagcgctacgatgaagcc
cttaatatttatctgaaactccggaacaaagaagtatttgatctgatacacaagcacaac
ctattcagctctattaaagacaagattgttcttctcatggactttgatacggagaaagct
gtggacatgcttttggacaacgaagataaaatttcaattgagaaagttgtgaatgagtta
caggatagaccggaactgcagcatgtgtacctgcacaaactgttcaaaagagaccatcat
aaaggccggaagtaccacgagaagcaaatcagcctgtatgcagaatttgatcgaccaaac
cttctgccttttcttagagacagcacacattgtccactggagaaggctcttgaaatctgt
caccagagaaattttgtagaggaaactgtatttcttctaagtagaatgggcaacagccgg
aaggctctgcaaatgattatggaagaactcaaagatgtggacaaagccattgagtttgct
aaagagcaggatgatgcggaattgtgggaggatctcatcttgtattctattgataaacca
ccatttataactggtttactgaacaatatcgggacacacgtcgacccaatacttctgatc
caccgcataaaagaaggaatggagattcccaatctaagagactcccttgttaaaatccta
caggattacaacctccagatcttactaagagagggctgcaaaaaaatcctagtatcagac
tctttgtcattgttaaagaagctgcacagaacccaagccaaagccgtgctggtggatgat
gaaagtatttgtgaagcctgcctgtctcccatacttccctcagatgcatccaagccgctt
ggtgtagtggcatttcactgccggcatacattccacagagactgcttgcctgttgccaac
actatgtctactctttatttctgtaacatctgctgtgcaaaaaaccggggacccgggagt
gcaatcctagagatgaagaagtaa
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