Xenopus tropicalis (tropical clawed frog): 100489838
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Entry
100489838 CDS
T01011
Symbol
kdm1b
Name
(RefSeq) lysine-specific histone demethylase 1B
KO
K19413
lysine-specific histone demethylase 1B [EC:1.-.-.-]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
xtr03036
]
100489838 (kdm1b)
Chromosome and associated proteins [BR:
xtr03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
100489838 (kdm1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Amino_oxidase
NAD_binding_8
zf-CW
Pyr_redox_2
Thi4
Pyr_redox
FAD_binding_3
HI0933_like
DAO
SWIRM
FAD_oxidored
Pyr_redox_3
Lycopene_cycl
FAD_binding_2
GIDA
NAD_binding_9
AlaDh_PNT_C
NAD_binding_7
2-Hacid_dh_C
MurD-like_N
TrkA_N
KARI_N
Shikimate_DH
XdhC_C
YjeF_N
Attractin
Glu_dehyd_C
PP2C
Motif
Other DBs
NCBI-GeneID:
100489838
NCBI-ProteinID:
XP_002932724
Xenbase:
XB-GENE-982183
UniProt:
A0A6I8S021
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All DBs
Position
6:complement(92671570..92693920)
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AA seq
821 aa
AA seq
DB search
MSGTKGRAKKKASLYEQCSDNQPVRSSGRQVKKKANESLEEDEDYSEKKYRKCEKAGCTA
TCPVCFASAAERCAKNGYTSRWYHLSCGEHFCNECFDHYYRSHKDGYDIYSSWKRIWTSN
GKSEPSPKAYMADQQLPYWVQCTKLECGKWRQLTKEIQLTTQMAKTYKCGMKMNNSVKTE
GSDQCSMPEDLRVSEVSTHSWYSMLILPPLLKDSPSATLLAAYYPDCVGMSPSCTSTNRL
HREGHSGKLDQSRGASANAVASGINPYFQPFYQPNECGKALCVRPDVMELDELYEFPEYS
RDPTMYLALRNLILALWHINCKEVLTPQICSHHIMVRGLVRIRCVQEMERILYFMSRKGL
VNTGVLSVSPGQYLLPKEYHNKSVIVIGAGPAGLAAARQLHNFGIKVTVVEARDRIGGRV
WDEKSFKGVIVGKGAQIVNGCINNPIAIMCEQIGIKMRKLREKCDLIEEGGRLTDPAIDK
RMDFHFNAVLDVVAEWRKDKTQNQDAPLGDKIQEICKAFTQESGIQFTDVEEKVLQFHLG
NLEYACGSNLHKVSARSWDHNEFFAQFAGDHTMLGAGYSMVIDKLAEGLDIRLNTPIRNV
DYTSQEVRITAADGQTFTAQKALVTVPLALLQKGAIQFNPLLPEKKVKAIHSLGAGVIEK
IALQFPYRFWDNKIQGADFFGHIPPNCNKRGLFGVFYDMDPEGKHAVLMSVITGDAVTSI
QELEDKQVVKQCMVILREVFKEQEVPAPIKYFVTHWAKDPWAHMAYSFVKTGGSGEAYDI
LAEDIQGKIFFAGEATNRHFPQTVSGAYLSGVREASKITTS
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggaacaaaagggagagccaaaaagaaagccagcttatatgaacaatgttctgac
aaccaacctgttcgatcatcgggcagacaggtgaagaagaaagctaatgaaagcttggag
gaagatgaagattattcagaaaaaaaatacagaaaatgtgaaaaagcaggctgcactgca
acatgcccagtttgttttgccagtgcagctgaaagatgtgctaaaaatggttacacatca
agatggtatcatctttcttgtggtgagcatttttgcaatgaatgctttgaccattattat
agaagtcacaaagatgggtatgatatatactcatcatggaagcgaatttggacaagtaat
ggcaaaagtgaacccagccctaaagcatacatggcagaccagcaacttccatattgggtc
cagtgcaccaaactggaatgtggaaaatggcgacagctaacaaaggaaattcagttaaca
acacaaatggcaaaaacatataaatgtggcatgaagatgaataactctgtcaagactgag
gggtcagatcagtgctccatgccagaagacttgagagtttctgaagtgtcgactcactca
tggtattccatgctcattctacctccattattgaaggacagcccttctgctactttgttg
gctgcctattacccagactgtgtaggtatgagtccatcctgcaccagcactaatcgttta
catcgtgaaggccactcagggaaactggatcaatccagaggtgcttctgccaatgctgta
gcttctggtattaacccctacttccagcctttttaccagcccaatgaatgtgggaaagct
ctttgtgtcaggccagatgtcatggaattggatgagctctatgagtttcctgagtattcc
agagatccaaccatgtatttggctttgagaaacctaatactggccctatggcacatcaat
tgcaaggaagtgcttaccccacagatctgttctcatcatataatggtgcgggggctggtc
cgaatcaggtgtgtgcaggagatggaaaggattctgtatttcatgagtagaaaaggtttg
gttaacactggagttctgtctgtctcaccaggccagtacctccttccaaaggaataccac
aataaatctgttatagtcattggggctggcccagctggattggcagctgctcggcagcta
cataattttgggattaaggtcactgttgttgaagccagagataggattggagggcgtgtt
tgggatgaaaagtcattcaaaggagtcattgttggaaaaggagcccaaattgttaatggc
tgcatcaacaaccccatagcgataatgtgtgagcaaattgggattaaaatgcggaagcta
cgagaaaaatgtgatctgattgaggaaggggggaggctaactgacccagcaattgacaaa
cgcatggactttcattttaatgccgtattagatgttgttgcagaatggaggaaagataag
actcagaatcaggatgcaccacttggagacaaaatacaggaaatttgcaaagcctttact
caggaatcaggaatccagtttacagatgtggaggaaaaggtcttacagtttcatctgggc
aatctggagtatgcttgtggcagcaaccttcataaggtatccgctcgatcgtgggaccac
aatgaattttttgcccagtttgcaggagaccacacaatgttgggtgctggatattccatg
gtcattgataaacttgcagaaggacttgatatccgtctgaatacaccaatccgaaatgta
gattatactagccaagaagttcgtattactgcagcagatgggcagacattcactgcacaa
aaggctttggttacagtacccttggctctgctacagaagggagccatccagtttaaccct
cttcttcctgagaaaaaggtcaaagccattcacagcttaggtgcgggagtcattgaaaaa
attgctttgcagtttccttataggttctgggataacaaaattcaaggagctgatttcttt
ggccatatccccccaaactgtaataaacgtggactcttcggggtgttctatgatatggat
ccagagggcaaacatgctgtcttgatgtcggttattactggtgatgctgtgacttctata
caagagttggaagataaacaagtagtgaaacagtgtatggtgattctgagagaggtgttt
aaagagcaggaggtaccagctccaatcaaatactttgtcacgcactgggcaaaagaccca
tgggcacatatggcttacagttttgtaaagactggtggaagtggggaagcttatgacatc
ctagcagaagatatacaaggcaaaattttctttgctggtgaggccacaaatcggcatttc
ccacaaactgtatctggcgcttacctaagtggcgttcgtgaagcgagcaaaataaccacc
tcctga
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