KEGG   Xenopus tropicalis (tropical clawed frog): 100489926
Entry
100489926         CDS       T01011                                 
Symbol
mdc1
Name
(RefSeq) mediator of DNA damage checkpoint protein 1 isoform X2
  KO
K20780  mediator of DNA damage checkpoint protein 1
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:xtr03400]
    100489926 (mdc1)
DNA repair and recombination proteins [BR:xtr03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    100489926 (mdc1)
SSDB
Motif
Pfam: BRCT_2 RTT107_BRCT_5 FHA BRCT Yop-YscD_cpl PTCB-BRCT
Other DBs
NCBI-GeneID: 100489926
NCBI-ProteinID: XP_002939513
Xenbase: XB-GENE-6469178
UniProt: A0A8J0QR36
LinkDB
Position
8:complement(75192560..75219034)
AA seq 2038 aa
MDDTQRLQWDDEEQDVSFDRDKPVGNLHMFNGIHGPAQDFPIYPGTNIIGRHTNCDVTLP
AQSVSKKHAIIEVEADCHTLCDQGSLNKTRRGKAAIAPHVRYALSDGDLLLFADVACRYS
FTKKLEEEEAENEESEDDILVPGTQATLSIEKTPGVAIRRMGRGAVLAMDSGDEEEEELK
GKDLNYEAKGLKTSGEECKSPASASFSHNMDTIVPESDEENDTSVSEPRFPSLNLRCDSD
TDTHDTPMKAGTSYTPSQDCVLSPSFKEQVVGDHSEITKSTLISNQEMFADEQVNTESKV
SKCSPDTADKNDRETKEENNTPIVNTNIAEEGGTGVTDDPLIDGLKVENQKKENDCYETL
QVDIKQQESVKIILDSNQEENRTLKVKLVNTGSADIILDKNIDGEEGCVNTKEIDNQIRE
GAFHLDSDTDVEESDTSIPGINVPRVENSGNNTDSDTDTEEDKPKILQPAIQQNVEEGFN
LDSDTDVEGNDSNSVNKRLKNTEKAKMIQDSDTDADDSIMSKVEERRNPAGTKKDYSSTS
LNTEGKRQENYLSTLDSDTDVEDIADGSSPSVVKKQDKAEAAHTNVTDTTAGEETCTDAG
IEKIVVSADRNECHTGGVTQEQEATSEFHLDSDTDIEEDDNLLDMSSASTRVKVTEVHSV
ILEKLRTSPGERKEKRAIEIDLDSNTDVDEADETEVDRKETFHMDSDTDLEENDSGPPVV
GGIEKKFTAIAHSDCTSDTGSNVKNVTSSITENTEKGETDGIDCEDAEYQMMATQCYLEP
QEKETDIQDEDDCAEEATQAFIFSSTWAEPEPFKRPADPIGVLQISAVTVSSSEEEPDEN
AIAETQPFCCEIKQPEEHSDQEPAKKSSIAEEKNNVACSLPQEEISQDDTQPVSQYLNKT
ASSNLVAPNLTCTTNFQQEKYLDGINEEKVKQANESVPNREEQLDEGVQDIEEDATQPYV
LSLPTVGDMATQPCSMSESVSGDGASQYLNTVVPAVASVASLPCNPSMQLSDGEPMQPSS
LNEADATQCHGFSMPLKEGDTVSISEEKVSVKQGPCRGESSMISEQLDPSNNVMSKHPGE
VLVHSVPPLEKATEQVAEQPQAATRMTEEDREENKGKRRSTEGEDSKDSAEVTTSVTRGK
KRTWKKTASPASEETKGKKTAKMQVMEKALPEAKMEEECKEEQNNKPNTSSILARLKTGR
KGKQDIEEPLDYNVEGYNVSVQQVEEDMKRFTSRRSVRKPKDGNDQETGSRNLPEITRHS
SLDLSESVVEKKVDMSSDEHMKYQKDDEFLTANGTTINVKRKGAKRNVKEEENKFVVDNI
PGKRPTRNNRPNVTEKNNEEADDKQRITRRNSRQLEIVEIKPDNTEILDSKRQNQSRKSP
NIKKNLKVDESKETEKCEGKTRENTPKRTSRRTKKKCTEELNMEEWEKSKEEADSKQRVT
RRNSRLSESVESIPEDTDIVDSEQQDQSRKSRNIKKNLKRGEEEKLEGTNRDNTEKWTSR
RTRKECKEKLNMEDHEKSKVEPSIEQSEQEHTEAEGQDQSRKSRKTKKDLPQPVINEEET
LVETIRKDSVGRTSRRRKKSCIEEDLMDSEVLVISKPEQEDPPTKNVPRSKRKNLKDEPK
EGDTEHNVFVSKNENLDEMQTTQRKSNSKDGDVQNDNKTLCEVDSKSGNSDIRTRKKKKV
VTGTQKTTEVEGEMLDGSMTIDSHEDVSPTGMRKSRRTTTKEELLKSTTLAPVRKRGQQP
KTGGDEVKRKKVNEEFEQEKTVGRRGQARQPKLEDENTDGNSFGKDSAVPFPSPSGNSRL
RPSTSFESPTEGRTPRRAARSLTTSPYMSQRSIAAKVLFTGVVDPAGEETIRNLGGEVAE
SIFDCTHLVTDRIRRTVKFLCALAKGIPIVTLDWLDKCKKSRCFLSPAQFLVNDKEQEKS
FNFDLSESLQKAKKKLLFEGYEIHVTPNVKPEPEHMKDIIQCSGATFLPKMPKVYKDKCI
IVSCKEDATRCKSAPSTIPVTSAEFILTGILRQEINPHAYLLSTGPEEALPTPAKRRR
NT seq 6117 nt   +upstreamnt  +downstreamnt
atggacgatactcagcgcctgcagtgggacgatgaagaacaagatgtgtcttttgataga
gataaaccagtaggaaatctgcatatgttcaatggaatccatggtccagcacaagacttc
cctatttaccctggtacgaatatcataggacgtcatacaaattgtgatgtgactcttcca
gctcagtctgtctctaagaaacatgctattatagaggttgaggctgactgccataccctc
tgtgaccaaggaagtctaaacaaaactcgccgtggcaaggcagccattgctcctcatgtg
agatatgctctgtctgatggagacttattgttatttgctgatgtagcatgtcgttactca
ttcacaaaaaaactagaggaggaggaggcagagaatgaggaaagtgaagatgatattttg
gttcctggaacacaggctactttgtcaattgaaaaaactcctggggtagcaatacgcaga
atggggagaggagcagtgctggcaatggactctggtgatgaggaagaagaggaattaaaa
gggaaagatctgaattatgaagctaaaggtcttaaaacatccggggaggaatgcaagtca
cctgccagtgcttccttttcccacaacatggatactattgttcctgaaagtgatgaggag
aacgacacatctgtgtctgaaccacgtttcccttcactcaacctccgttgtgatagtgat
acagacactcatgacactcccatgaaggcaggcacaagctacaccccctcccaagattgt
gtgctttctccttctttcaaagaacaagttgtgggagaccacagtgaaatcacaaaatct
actttgattagcaaccaagagatgtttgcagatgagcaagtaaacactgaatccaaagtc
tcgaagtgtagtcctgatacagctgacaaaaatgatagagagacaaaggaagagaacaat
actcctatagtaaacactaatattgctgaggaaggtggaacaggagtaacagatgatcca
ttgatagacggtctaaaagtggaaaaccaaaaaaaggaaaatgactgttatgaaaccctg
caagttgacatcaaacagcaagagagtgttaaaattatcttggatagtaatcaggaggaa
aacagaactttgaaagtaaaattggtaaacacaggatctgcagatattattctagacaaa
aatatagatggggaagaaggttgcgtcaatactaaggaaatagacaaccagatcagagaa
ggggcttttcatttggacagtgacacagatgtagaggagagcgatacttcaatccctgga
ataaatgtaccccgagtggagaattctgggaataacacagacagtgatacagatactgaa
gaagataaacctaaaattttgcaacctgccatacaacagaatgtcgaggaagggtttaat
ttggacagtgacacggatgttgagggtaatgactccaattctgtaaataaaaggttgaaa
aatactgaaaaagcaaaaatgatccaagatagtgatactgatgcggatgattcgattatg
tcaaaggttgaagagaggaggaacccagcaggtacaaagaaagattacagtagtacatct
ctaaacacagaaggtaaaaggcaagaaaattatctatccacccttgacagtgatacagat
gttgaagacattgctgatggatcttccccaagtgttgtgaagaagcaggataaggcagaa
gcagctcatactaatgtaaccgatacaactgctggggaggaaacttgcacagatgctgga
atagagaagattgtggtgtctgcagatagaaatgaatgccacacaggtggagtcacacaa
gaacaggaggctacatctgaatttcacctagacagtgatacagatattgaggaagatgat
aatttactagatatgtcaagtgctagtactagggtaaaagtcacagaggttcactcagtt
atccttgaaaaactaagaacctcacctggagaaagaaaggaaaagagggctattgaaatt
gatctggacagcaatacagatgtggatgaagctgatgaaacagaagttgataggaaggaa
acatttcacatggacagtgatacagatctggaggaaaatgacagtggccctcctgtggtg
ggtggcatagaaaagaaatttacagccatagcacattctgattgtacctcagacacagga
agtaatgtgaaaaatgtaacctcttcaatcacagaaaatacagaaaaaggggagactgat
ggaatagactgcgaagatgcagaatatcaaatgatggctactcagtgttatctagagccc
caggaaaaagagactgatatacaagatgaagatgattgtgctgaggaagctacacaagca
tttatcttcagttccacatgggctgagccggaaccatttaaacgtccagccgatcctatt
ggagttttgcaaatctcagcagtgactgttagttcatcagaggaagaaccagatgaaaat
gccattgcggagactcagccattctgctgtgagataaagcagccagaggaacacagtgac
caagagccagccaaaaaaagttctattgctgaggaaaagaacaatgtagcttgctctctg
cctcaagaagaaatatctcaggatgatacccagccagtgtctcagtacttgaataaaaca
gcttcaagtaacttggtggcaccaaatttaacttgcacaacaaattttcaacaagaaaaa
tatcttgatggaattaatgaagaaaaggtcaaacaggctaatgaaagtgttccaaacagg
gaggaacagcttgatgaaggtgtccaagacatcgaagaggatgccacccaaccatatgtt
ttaagtttaccgacagtgggtgacatggctacacagccttgtagcatgagtgagtctgtc
tccggggatggtgctagtcagtatttaaatacagttgttccagctgtagctagtgttgct
tctctaccctgtaacccaagcatgcaattatctgatggcgaacccatgcagccttccagt
ctaaatgaggctgatgcaacccaatgtcatggatttagtatgccccttaaagaaggtgat
acagtgagcatttcagaagagaaagtatcagtaaagcaaggtccttgcagaggtgagagt
agcatgatatctgagcagttagacccttctaacaatgttatgagcaagcacccaggtgaa
gttcttgtgcattctgttcctccattggagaaagcaacagagcaggttgcagagcagcct
caagcagccaccagaatgacagaagaagacagagaagagaataaaggaaagaggagatca
acagaaggagaagatagcaaggattcagcagaagttacaacttccgttactaggggtaaa
aagagaacctggaaaaagactgcatctccagcatcagaggagacaaaaggcaaaaaaaca
gctaaaatgcaggtcatggaaaaagcattacctgaagcaaaaatggaagaagaatgtaaa
gaagagcagaacaataagccaaacactagctctatccttgcacgtttaaaaacaggtaga
aagggaaaacaagatatcgaagagcctttagattacaatgtagaaggctataatgtgagc
gtgcaacaggtagaagaggatatgaaaagatttacttcaagaagatcagttagaaaacca
aaggatggaaatgatcaggagactgggtcaagaaatttaccagaaataaccaggcattcc
agtttagaccttagtgagtcagtagtggaaaaaaaagtagatatgtcttctgatgaacac
atgaagtatcagaaagatgatgaattcttaactgctaatggaacaactataaatgtaaaa
agaaagggtgcaaagagaaatgtaaaggaagaggagaacaagtttgtggtagataacatt
cctggaaagcgaccaacaaggaataacaggccaaatgttacagagaaaaataatgaggaa
gcagatgataaacagaggattacaaggaggaattcaaggcagctggagatagtagaaatc
aaaccagacaatacagagattttagattctaaaagacaaaaccagtccagaaaatcacca
aatataaagaaaaatttaaaagtggatgaatcaaaagagacagaaaaatgtgagggcaaa
actagagagaacactccgaaaaggacatcaaggaggacaaagaaaaaatgcacagaggaa
ctgaacatggaagaatgggaaaagtcaaaagaagaagcagacagtaaacagagggtcaca
agaaggaactccaggctatcagagtcagtagaaagcataccagaggatacagatattgta
gattctgagcaacaagaccagtccagaaaatctcgtaatataaagaagaatttgaaaagg
ggcgaggaagaaaaacttgagggcaccaacagagacaacactgaaaaatggacctcaagg
aggacaagaaaggaatgcaaagagaaactgaacatggaggaccatgaaaagtcgaaagta
gaaccatccattgaacagtctgaacaagaacatactgaggctgaaggacaagatcaatct
agaaaatctaggaagacaaagaaggatttgccacaacctgttatcaatgaggaagaaacc
cttgtagaaaccatcaggaaagactctgtaggacgaacatcaaggagaagaaagaagagt
tgcatagaggaagatctgatggacagtgaggttctagttatcagtaaacctgaacaagaa
gatccacccacaaaaaatgttcctagaagtaaaaggaagaatttgaaagatgaacctaag
gagggagatactgagcataatgtatttgtatcaaagaatgaaaatctagatgaaatgcag
accactcaaaggaaaagcaattcaaaagatggagatgtgcaaaacgataataaaacactg
tgtgaagtcgactccaagtctggtaattcagatataagaacaaggaagaaaaaaaaagtt
gtcacagggactcaaaaaaccacagaggtagaaggggaaatgctagatggtagcatgaca
atagactcgcacgaagacgtttcaccaactggaatgagaaaaagcaggcggacaacaacc
aaggaggaattactcaagtctaccactctggctccagtaaggaagagagggcaacagcca
aaaactggaggagatgaggtcaagagaaaaaaagtgaatgaagagtttgagcaggagaaa
acagtgggtagaaggggccaagcacggcaaccaaagctggaggatgaaaatactgacggc
aacagttttggaaaggactcggccgttccttttccatcaccctcggggaactcccgttta
aggccaagcacatcctttgaaagcccgacagaaggccggacaccaagacgtgctgctcgc
agcttgaccacaagcccctacatgtcccaacggagcattgcagcaaaggttctatttaca
ggtgtggtcgaccctgcaggtgaggagaccattcgtaatctaggaggggaagttgcagaa
tccatatttgactgcactcatcttgtaactgaccgtatcagacgtaccgtcaaatttctc
tgtgctcttgccaagggcatccctattgtgacactagactggcttgacaagtgcaaaaag
agcagatgttttttgtcccctgctcaatttctggtgaacgataaagaacaggagaaaagc
ttcaacttcgatttgtcagaatcattgcaaaaagccaaaaagaaactgctgtttgagggc
tatgaaattcatgtcaccccgaatgtgaaacctgagcctgaacacatgaaagatattata
cagtgcagtggggcaactttccttcctaaaatgcccaaagtatacaaggacaaatgcatc
attgtatcatgtaaggaagatgccactcgctgcaaatctgctccctccactatccctgtt
acttctgcggaatttatattaactgggatcctgcgtcaggaaataaatccacatgcttat
ctgctaagtactggacctgaggaagctttgcctacccctgccaaacggaggcgctga

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