Xenopus tropicalis (tropical clawed frog): 100490352
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Entry
100490352 CDS
T01011
Symbol
col6a1
Name
(RefSeq) collagen alpha-1(VI) chain
KO
K06238
collagen type VI alpha
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04510
Focal adhesion
xtr04512
ECM-receptor interaction
xtr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100490352 (col6a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100490352 (col6a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
100490352 (col6a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
xtr04147
]
100490352 (col6a1)
00536 Glycosaminoglycan binding proteins [BR:
xtr00536
]
100490352 (col6a1)
Exosome [BR:
xtr04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
100490352 (col6a1)
Glycosaminoglycan binding proteins [BR:
xtr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100490352 (col6a1)
Hyaluronan
Extracellular matrix or blood plasma proteins
100490352 (col6a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
VWA_3
DUF1194
YJL171C_Tos1_C
vWA-TerF-like
RKP_N
Motif
Other DBs
NCBI-GeneID:
100490352
NCBI-ProteinID:
XP_002932077
Xenbase:
XB-GENE-998856
UniProt:
F7E9E4
LinkDB
All DBs
Position
9:complement(61359271..61397930)
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AA seq
1046 aa
AA seq
DB search
MKMLQGRLPLTILHLLLLVGGGMTQQKPQGPIKDPNGFPAVGPTITVRPGPGPDPERVTF
QDCPVDVFFVLDTSESVALRVKPFKTLVTQVKDFTKKFIDKLTSRYYRCDRNLVWNAGAL
HYSDEVIMISSLTRDMKTLRDDVETVEYIGKGTHTDCAIKRGIEEVLIGGSHQKENKYLI
VVTDGHPLEGYKEPCGGLEDAANEAKHLGIKVFSVAISPNHLEPRLSVIASDASHRRNFT
ATSAAGLTDEEIDNTIDTIIDMIKENAEQGCCTYECRPSRGSAGPAGPPGYEGEVGKPGL
PGDRGLPGDPGRQGDIGPVGYQGMKGDQGTRGEKGGRGAKGSKGEKGKRGIDGIDGQKGE
DGYNGLPGCKGSPGFDGAPGSPGPKGDPGSYGPKGEKGVPGTPGTAGRSGSTGNTGDKGD
PGPNGSAGEKGESGDEGDAGADGPPGKRGEPGEQGPPGVSGARGARGEKGEPGPPGDQGR
DGPAGAFGDPGEAGPQGPKGYRGDEGPRGPEGPKGPRGAKGLPGEQGIAGERGDDGRPGN
GTDGFPGFQGYPGSRGDPGSNGTKGYPGPKGDEGEQGEPGDDNVSPGPPGPKGAKGYRGP
EGPPGSPGPAGPPGPDECEILDIIKRMCSCCECTCGPLDLLFVLDSSESIGHSNFQISKD
FIIKVIDRLSRDEHVKFDAENSHVGVVQYSHGKTQEVVAMGDASIQSIGQLKEAVKNLKW
IAGGTWTGEALAFTKDNLLKRFKLEKKIALVLTDGHSDILRDTTPLNTLCEVTPVVSVGV
GDIFQNAPNSDQLVQISCGGRPYSKGLSLQRTSFAELLDDGFLHNVTSHMCSDRKCPDYS
CPITYEGPADITLLVDSSTRVGNQHFQTSKSFVKLLAQRFLKAKAPPSGSARVSVVQYSG
LNQQKVEAQFVSNYTVLEVPVDNMQFINGATNVVSALRAVTELYREDSLAGVSKKLLVFS
DGNTQDEKDMLKAVQDARAAGIEIYVLAVGSRLNYPNLQVMLTGSAADITAPFPEERLFR
VPDYPSLLQGVRYQSISRRISLKSSQ
NT seq
3141 nt
NT seq
+upstream
nt +downstream
nt
atgaagatgcttcaagggcgcctcccgctcaccatcctgcaccttctccttcttgttggg
ggcggaatgacccagcagaagccacagggacccattaaagaccccaacggatttccagca
gtgggacccactataactgtaagacctggtccaggtcctgatcctgaaagagtcactttc
caagactgccctgtggatgtcttctttgtgttggatacatctgagagtgttgccctgaga
gtgaagcctttcaagaccttagtgacacaagtgaaggactttaccaagaaatttattgat
aaactgacctccaggtattatcggtgtgaccgtaacctggtgtggaatgcgggtgctcta
cactacagtgacgaggtgatcatgatcagcagcctgacccgggatatgaagactttgagg
gatgacgtagagacagttgaatacattggaaaaggaacccacactgactgtgctattaaa
aggggcattgaggaggtcctgattggagggtcacaccaaaaagagaacaagtacctcatt
gtcgtgactgacggacatcctctggagggctacaaagagccatgtggtggtctagaagat
gcagcaaatgaagccaaacacttgggcatcaaagtcttctctgttgccatttcaccaaac
catctggagccaaggctcagtgtaattgcatctgatgcaagccacaggaggaacttcaca
gctaccagtgctgctggtctgactgatgaggaaatagacaatacaattgataccattatt
gatatgattaaagaaaatgctgagcaggggtgctgtacctatgaatgcaggccctctcgt
ggctctgcaggaccagcaggaccacctggttatgagggagaagtcggaaagccaggtctt
ccaggcgatcgagggttaccaggcgatccaggtcgacagggtgatattggacctgtgggc
taccaaggaatgaaaggtgaccaaggtacccgaggagagaagggtgggagaggagccaag
ggatcaaaaggagaaaaaggaaagagaggaattgatggaattgatggacagaagggagag
gatggatacaatggtcttcctgggtgcaaaggatcacctgggtttgatggagcccctgga
agtccaggacctaaaggtgatcccggatcatatggcccaaaaggagaaaagggtgttcct
ggaactcctggcactgctggaagatctggaagcacaggaaacacaggagacaagggagat
ccaggtcctaatggctcagcaggagagaagggagagtctggcgatgagggtgatgctgga
gctgatgggcctcctggaaaacggggtgaacctggagagcagggtcctcctggggtatct
ggggccagaggagctagaggagaaaagggtgagcctgggccaccaggcgaccaaggaaga
gatgggccagctggtgcttttggtgatccaggagaagctgggcctcagggacccaaagga
tacagaggggatgaaggaccaagaggtccagaggggccaaaaggaccaagaggagcaaaa
ggcttacccggagaacaaggcattgcaggagagaggggagatgatggccgtccaggaaat
ggtactgatggcttcccaggattccagggatatcctggtagccgaggagaccctggttca
aatggaaccaaaggttatcctggacctaagggagatgaaggagaacaaggggaacctggt
gatgataatgtaagtccaggacctcctggtcccaaaggagcaaagggatatagaggacca
gaaggacccccaggatctccaggccccgcaggacctccaggcccagatgagtgtgagatc
ctggatatcataaagaggatgtgctcttgctgtgaatgtacttgtggtcctttagacctc
ctcttcgtgcttgacagctctgagagtattggccactccaacttccagatctccaaagat
tttattattaaggttattgatcgactcagccgggatgaacatgtcaagtttgatgctgaa
aattcacatgttggagtggtgcagtacagccatggaaagactcaagaagttgtagccatg
ggagatgcaagcatccagtccattggacaactgaaggaggctgtgaagaacttaaagtgg
attgcaggtggaacctggactggagaagctcttgcttttactaaagataatctcttgaaa
cggtttaaattggagaagaaaatagcacttgtacttacagacggacattcagatattctg
agagacacaactccactaaatacattgtgtgaagttactccggttgtatcagtgggcgta
ggggacattttccaaaatgctcctaattcagatcagttggttcagatttcttgtggtgga
agaccttattcgaaggggctgtctttgcagcgaaccagctttgcagaacttctggatgat
ggctttttgcataatgttacttctcatatgtgcagcgataggaagtgtccagattactcc
tgccccatcacatacgaagggccagcagacatcacactgcttgtagacagctctactaga
gttggaaatcagcatttccaaaccagcaaaagctttgtgaagctcttagctcaacgtttt
ctgaaggcaaaagcccctccatcaggctctgcacgcgtgtcggtggtgcaatatagtggc
ctcaaccagcagaaagtggaagcacagtttgtgtccaattacacagtactagaagttcca
gtggataatatgcagttcataaatggtgccacaaatgtggtatctgctctgcgtgctgtg
acagagctgtatcgtgaagatagtttggcaggggtaagcaagaaactgctggtcttctcc
gatgggaatacacaggatgagaaggacatgctgaaagctgtgcaagatgctcgagcggca
ggcattgagatctacgtattggcagtggggagccgccttaattatccaaatctacaggtt
atgcttacaggctctgctgcagatataactgcaccttttccagaggagagactgttccgt
gttcctgattatccttctctactccaaggtgtccgctatcagtctatcagtcgtcgaata
tccctgaaatcctctcagtaa
DBGET
integrated database retrieval system
