Xenopus tropicalis (tropical clawed frog): 100490375
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Entry
100490375 CDS
T01011
Symbol
thoc3
Name
(RefSeq) THO complex subunit 3
KO
K12880
THO complex subunit 3
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03013
Nucleocytoplasmic transport
xtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100490375 (thoc3)
09122 Translation
03013 Nucleocytoplasmic transport
100490375 (thoc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xtr03019
]
100490375 (thoc3)
03041 Spliceosome [BR:
xtr03041
]
100490375 (thoc3)
Messenger RNA biogenesis [BR:
xtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
100490375 (thoc3)
Spliceosome [BR:
xtr03041
]
Complex C
Other components
EJC/TREX
100490375 (thoc3)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
100490375 (thoc3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_IFT122_1st
Beta-prop_WDR5
WD40_CDC20-Fz
WD40
Beta-prop_WDR3_1st
WD40_Prp19
Beta-prop_EML_2
WD40_WDHD1_1st
ANAPC4_WD40
WDR55
Beta-prop_Aladin
Beta-prop_WDR36-Utp21_2nd
EIF3I
Beta-prop_WDR3_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR19_1st
WD40_Gbeta
Beta-prop_RIG_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT140_1st
Beta-prop_Vps41
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_WDR36-Utp21_1st
Beta-prop_NOL10_N
DSE1_N
eIF2A
RMC1_N
Beta-prop_WDR35_TULP_N
Beta-prop_TEP1_C
WD40_RFWD3
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_HPS5
Beta-prop_EIPR1
Tricorn_2nd
PAC11
B-prop_COPA_B_2nd
WDR90_beta-prop_4th
TRM82_WD
PD40
Beta-prop_NUP159_NUP214
Beta-prop_ACSF4
Beta-prop_SPT8
Beta-prop_WDR75_1st
Beta-prop_WDR41
CNH
Beta-prop_Nup120_160
Cytochrom_D1
Beta-prop_NWD2_C
YNCE
DPPIV_N
Beta-prop_ELP1_1st
Beta-prop_SCAP
Motif
Other DBs
NCBI-GeneID:
100490375
NCBI-ProteinID:
XP_004912910
Xenbase:
XB-GENE-1006090
UniProt:
A0A8J0R2M6
LinkDB
All DBs
Position
3:complement(45409876..45419767)
Genome browser
AA seq
346 aa
AA seq
DB search
MTRKSTLCRQGNAEPEVCCGRCFRLSTMSVQEIQEHFKTNNKTREFSAHSAKVHSVAWSC
DGRRLASGSFDKTASVFVLEKDRLTKENNYRGHGDSVDQLCWHPYNPDLFVTASGDKTIR
IWDVRNEKCISTISTKGENINICWSPDGQTIAVGNKDDVVTFIDAKTHRVKGEEQFKFEV
NEISWNNDNDMFFLTNGNGCISILSYPDLKPIQSINAHPSNCICIKFDPTGKYFATGSAD
ALVSLWDVDELVCVRCFSRLDWPVRTLSFSYDGKMLASASEDHFIDIAHVETGERICEVQ
CESPTFTVAWHPKKYLLAFACDDKDGKYDNSREAGTVKLFGLSNEC
NT seq
1041 nt
NT seq
+upstream
nt +downstream
nt
atgacccggaagtcgactctgtgtcgccaaggtaacgcggagccggaagtctgctgtggc
cgttgcttccggttaagtaccatgtctgtgcaggagatacaggagcatttcaaaaccaat
aataagacccgagagttctcggcgcacagtgcaaaggttcattcggtggcttggagctgt
gatgggaggcgcctggcgtcgggctcctttgacaagactgcgagcgtgtttgtgctggaa
aaggaccggctgaccaaagaaaataactaccgtgggcatggggacagtgtagaccaactc
tgctggcatccttacaatccagacttatttgtcactgcatctggagataaaacaatacgc
atatgggatgttagaaatgaaaaatgcatctccactattagtactaagggggaaaatatt
aacatctgctggagcccagatggacagacaattgcagtgggtaacaaagacgatgtggtc
accttcatagatgcaaaaactcaccgtgtaaaaggagaagagcagtttaagtttgaagtg
aatgaaatctcctggaacaatgacaatgatatgttctttctcaccaatgggaatggctgt
atcagcattctgagttacccagacctgaagcccatacagtcaatcaatgcacatccttcc
aactgcatctgcataaagtttgaccccacaggaaagtattttgccacaggcagtgcagac
gctttggtcagtctttgggatgtagatgagctggtgtgtgttcgctgtttctccagattg
gactggcctgtcaggacactaagcttcagctatgatggcaaaatgctagcctctgcatct
gaagatcattttattgacattgcacacgtagagactggggaaagaatctgtgaggttcag
tgtgagtctcctacattcacagtggcctggcatcctaaaaaatatctcctagcttttgcc
tgtgatgacaaagatggaaaatatgacaacagccgtgaagcagggactgtgaagcttttt
ggcctatcaaatgaatgttaa
DBGET
integrated database retrieval system
