Xenopus tropicalis (tropical clawed frog): 100490733
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Entry
100490733 CDS
T01011
Name
(RefSeq) nuclear RNA export factor 1
KO
K14284
nuclear RNA export factor
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03008
Ribosome biogenesis in eukaryotes
xtr03013
Nucleocytoplasmic transport
xtr03015
mRNA surveillance pathway
xtr05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100490733
03015 mRNA surveillance pathway
100490733
03008 Ribosome biogenesis in eukaryotes
100490733
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
100490733
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xtr03019
]
100490733
03009 Ribosome biogenesis [BR:
xtr03009
]
100490733
Messenger RNA biogenesis [BR:
xtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
100490733
mRNA cycle factors
Stress granule specific factors
100490733
Ribosome biogenesis [BR:
xtr03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
100490733
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NXF_NTF2
Tap-RNA_bind
TAP_C
UBA_8
LRR_8
UBA_4
LRR_4
GluR_Homer-bdg
LRR_9
Motif
Other DBs
NCBI-GeneID:
100490733
NCBI-ProteinID:
XP_004914856
UniProt:
A0A8J0R4J3
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Position
5:complement(8155616..8196343)
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AA seq
658 aa
AA seq
DB search
MGRRILVTSLRNIAEMTMYTSGFRSRHSYLPLRVPGPPCLSLCRTAERPHLTKQFYPSMR
LEVAKKKKRFRKQSWFHRRSVQLSVDGRRRVKCNFIECDRDSQGQCPLSLDESNEIEDPY
EGGSHLNPSNGQLYRAKNDNTQVWFKITIPYGKDYNKDWLLNAIREECGLFFRAEQFHYV
KKKAVFFVDKFATAKALLNASRKIQADQYFKIVINVTPSMYRHHGNPTLCHRDAKMGSLC
PGDSLYCIQACLQKRYDDRTASLDLSNLSIDPELQSTNKCLCLNQASDAELILQLIAEHF
PQLLSLDLSYNNLSSLTDFSGLSALAPQLQSMNLSYNQICQAQEINVLHKLELKELWLEG
NPFLASLESTSTYYRIVMNHFPSVQILDGHFFKPGCFFGKVPRSLPQIKGSFFVNEDLRA
FLVPFVSRYFTIYDSTQRQQLLPLYHENCCCSFSLPNVLLPHICVEQAKEYLKENRNLLR
VKRAALRQQLMKYNRLQVVGFLCNLPRTEHDLSSFTLDVWFQTPSLIGFSVAGIFKEESP
KWKKLCRSFRRSFLIVPAMEACAQILNDQLVIINSYVDQYEDKCGPASPDPGSPGSNVAL
CDGNMAVLRNFSESTGMKVEWALKCLEDNNWNVEQAQDVFSLLKEKGTIPQDAFQAAM
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atggggcgtcgcatcctggtgacgtcactgcggaatatagcagagatgaccatgtacacc
tcaggctttcgttccaggcactcttacctgcctttaagggtgcctggaccgccttgcctc
agtttgtgtcgaactgcagaaaggccccacctcactaagcagttctaccccagcatgaga
ctagaggtggcaaaaaagaaaaaacgttttcggaaacaaagctggttccaccgaagaagt
gtccagctttcagttgatggaagacgaagagtaaaatgcaattttatagaatgcgacagg
gactcgcagggacagtgcccactatctttggatgaatctaatgagattgaggacccatat
gaaggaggatcacatttgaatccatcaaatggccagctttatagagcaaaaaatgataac
actcaagtatggtttaaaataacgatcccttacggaaaagattataataaagactggctc
ttgaatgctattcgcgaggagtgtgggcttttctttagggctgagcagttccactatgtt
aaaaagaaggcagtgttctttgtggataagtttgccacagcaaaggcgctacttaatgca
tccaggaaaatccaagctgatcagtacttcaagatagtcatcaatgtaactccctctatg
tatcgccatcatggaaacccaactctgtgccatagggacgcaaaaatggggtctttgtgt
ccaggggatagcctttactgtatccaggcgtgcctccagaaacgatacgatgataggacc
gcaagcctcgatctgagcaacctttctattgatccagagttgcagtcaacaaataaatgt
ttgtgcttgaaccaagcgtctgatgccgaactgatactgcagctgatagcagagcatttc
cctcagctcctctctttggatcttagttacaacaacctctccagccttactgacttctct
ggcctctccgctctggccccccagctacagagtatgaatctctcttacaaccagatttgc
caggctcaggaaatcaatgtgctacacaagttggagctgaaggagctctggctggagggg
aaccctttccttgcatccctggagagcaccagtacttactaccggattgtaatgaatcat
ttcccttcagtacaaatactggatggacatttcttcaagccgggatgcttttttggcaag
gtccctagaagtctcccccagatcaagggcagtttcttcgtaaacgaagatctccgagcg
tttctggtgccgtttgtgagccgatatttcacaatatatgattctactcagcgccagcag
ctgctgcctctgtaccatgagaactgttgctgctctttcagtttgccgaatgttttgctt
ccgcacatttgtgttgaacaggcgaaggagtacctgaaagagaaccggaacctcctgcgg
gttaaaagagcagcactaaggcagcagctgatgaagtacaaccgactgcaagtggtggga
ttcctgtgcaaccttcccaggactgagcatgacctgagctccttcactttggatgtctgg
tttcagactccttcactcattggcttttctgtggccggaatatttaaagaagagagcccg
aaatggaagaaactgtgcagatcattcagaaggtccttcctgattgtgccggcaatggaa
gcctgtgcccagattttgaatgaccagttggtgataataaattcctacgtggatcagtat
gaagacaaatgtggacctgcgtcccctgacccgggctcccctggcagtaacgtagcgctg
tgcgatgggaatatggccgtactcagaaatttctcagaatctaccggaatgaaggtggag
tgggcactcaaatgccttgaagacaataactggaatgtggaacaagcacaagacgtattc
agtctcttgaaggaaaagggaacaatccctcaagatgccttccaggcggccatgtaa
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