KEGG   Xenopus tropicalis (tropical clawed frog): 100490752
Entry
100490752         CDS       T01011                                 
Name
(RefSeq) tRNA pseudouridine synthase A isoform X4
  KO
K06173  tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:xtr03016]
    100490752
Enzymes [BR:xtr01000]
 5. Isomerases
  5.4  Intramolecular transferases
   5.4.99  Transferring other groups
    5.4.99.12  tRNA pseudouridine38-40 synthase
     100490752
Transfer RNA biogenesis [BR:xtr03016]
 Eukaryotic type
  tRNA modification factors
   Psudouridine synthases
    100490752
 Prokaryotic type
    100490752
SSDB
Motif
Pfam: PseudoU_synth_1
Other DBs
NCBI-GeneID: 100490752
NCBI-ProteinID: XP_002932295
UniProt: A0A803JU71
LinkDB
Position
3:106658931..106674674
AA seq 394 aa
MGRITLSHLRSWERCHSAFTSIYKADEMACQSMAKNKEDVPHEELDPAGTINASVEVLEN
NSNIQIPKRKFAIMLAYCGRGYYGMQMDLTRPNFPTIESALISALIQARCIPEMFYMQMK
QLKFQRCARTDKGVSALSQLVSVRLLPSCSNPVEKINSHLPPEILIIDMKRVTKGFCPKK
MCDKRSYSYMVPTFALSCCAPSVPDSNFRMPREDFHNINNLLSFYKGTHNFHNFTSRKAF
EDPSSFRHMLDVSCSEPFVFHGTEFAQIHITGQSFMLYQIRKMVGLIIAIAQGIVPADFL
PQCMQREKINIPPAPGLGLVLERVHFDWYNKRYGGDGFHQPISWEKSMPTVSVFWEERIL
PDILEGELENLSMSYWIEKLNRHNFLMFQNYKEV
NT seq 1185 nt   +upstreamnt  +downstreamnt
atgggaaggattacattatcgcatctccgttcctgggaaagatgccactctgcttttact
tccatctataaggctgatgagatggcatgtcagagcatggcaaaaaataaggaagacgtg
ccacacgaggagctagaccccgcaggtaccataaatgcatctgttgaagttttagagaat
aatagcaacatccagattcccaagaggaagtttgccattatgttggcctactgtggtcgt
ggttattatggtatgcagatggaccttacaaggccaaactttccaaccattgaatctgcc
ctgatttctgctctcattcaggctcggtgcattcctgagatgttctatatgcaaatgaag
caactgaagtttcagcggtgtgcccgtactgacaagggagtatctgctttgagccaactg
gtatcagtaagactcctaccatcttgctctaacccagtggagaaaatcaattcacatctt
cctcccgagatcctcattatagatatgaaaagagtaactaaaggattctgccctaagaaa
atgtgtgataagcgatcttactcttacatggtgcccacatttgcactttcttgttgtgct
ccctctgtacctgattcaaacttccgaatgcctagggaagactttcacaacatcaacaat
cttctatctttctacaagggaacacacaattttcacaattttacatccaggaaagcgttt
gaggatccaagctcttttagacatatgttggacgtgtcatgctcagaaccttttgtcttt
catgggacagagtttgctcaaattcacattactggtcaaagcttcatgctgtaccaaatt
cgtaaaatggtgggtttgattatagctatcgcacaaggcattgtcccggctgattttcta
cctcagtgcatgcagagggagaagatcaacatccctccagcacccggacttggcttggta
cttgagcgtgttcattttgattggtataataaaagatatgggggagacggctttcaccaa
ccaatttcctgggaaaagtctatgcctactgtgtcggtgttttgggaggaaagaatattg
ccagacatacttgaaggagaactagaaaatctttccatgtcttactggatagaaaaactt
aatcggcacaattttctcatgtttcaaaattacaaagaagtttaa

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