Xenopus tropicalis (tropical clawed frog): 100490872
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Entry
100490872 CDS
T01011
Name
(RefSeq) polyadenylate-binding protein 1-B
KO
K13126
polyadenylate-binding protein
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03015
mRNA surveillance pathway
xtr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100490872
09123 Folding, sorting and degradation
03018 RNA degradation
100490872
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xtr03019
]
100490872
03041 Spliceosome [BR:
xtr03041
]
100490872
Messenger RNA biogenesis [BR:
xtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
100490872
mRNA cycle factors
Stress granule specific factors
100490872
Spliceosome [BR:
xtr03041
]
Complex C
Other components
Complex C specific factors
100490872
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
Motif
Other DBs
NCBI-GeneID:
100490872
NCBI-ProteinID:
XP_002932728
UniProt:
A0A8J0QL59
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All DBs
Position
6:complement(91348245..91349835)
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AA seq
449 aa
AA seq
DB search
MNMDQKVHFEIQVEAKRVVHAVDVLLNESGMSDEHVNDTESKTKTCPIYVKNFVKEIDED
DFFGKCGASTKIINNDCGQQTEFGLLPFNKQKDAIRAVDKMKGMDIYLAQAKIKEKRQTE
FSKKPEPLHKPRYNSVNLYVKNLSYEIDDYRLNKEFAPFGIITSAKVMREGGRSKGFGFV
CFSTPAEARKALSGMNGKILASKPLYVAWAQRKQERQVSLAQQYTQRMEKAWIPNTKVNP
NQALLSRCSMAPIPAAQNHSEDSLCRIPKQTAQFKQRCYRNAQGTAPHSFQYMPRAHPQI
STRKYKLIPTKTAVNLVRGIMSATSRNKYAAGDCNTELHSEKQTQAAMQHPAICVQGQEP
LTISLLVSASPHEQKQMLGVRLFPLVQIIDKKLAEKITGILLEFDTSEIIYMLESPELLR
TMANKAVTLLQGHQVQEVSMNSFNGTTNN
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgaatatggatcaaaaggtgcattttgagatacaagtggaagctaaaagggttgttcat
gctgttgatgttctcctaaatgaaagtggtatgtctgatgaacatgtcaatgacacagag
tccaaaacaaagacatgtccaatttatgttaagaactttgtaaaggaaatagatgaagat
gacttttttggcaaatgtggagcatctacaaaaattatcaacaatgattgtggacagcaa
acagaatttggcttacttccctttaataaacaaaaggatgctataagagctgtagataaa
atgaaaggcatggacatttatttggctcaagcaaaaataaaagagaaaagacaaactgag
tttagtaaaaagcctgaacctttacataaaccccgatacaatagtgttaacctttatgtt
aaaaacctcagttatgaaattgatgattatagactgaataaggaatttgcaccttttggt
ataattaccagtgctaaggtaatgagggaaggcgggcgcagcaaaggttttggatttgta
tgcttctcaacccctgcagaggctagaaaagcactttctggaatgaatggcaaaatattg
gcctcaaaacccctgtatgttgcttgggcacagcgaaaacaagaacgtcaggtttctttg
gctcagcagtacacgcagaggatggaaaaggcttggatacccaacactaaagtcaaccct
aaccaagctctgttatcaagatgttctatggcccctatcccagcagctcagaaccattca
gaagactctctatgcagaatccccaagcaaactgctcaatttaagcagaggtgctacagg
aatgcacaaggaactgcacctcattcatttcagtacatgccaagagcccacccccaaatt
tctacaagaaaatacaaattaattccaacgaaaacagcagttaatctggtgcgaggcata
atgtcagctacttccagaaataaatatgcagctggagattgtaatactgagctacattct
gagaaacagacacaagcagctatgcagcaccctgctatctgtgttcaaggacaggagccc
ctaactatttccttgttggtttctgcttctccacatgaacaaaaacaaatgctaggtgtg
cgtcttttcccacttgtacaaattatagataaaaagctagctgagaaaattactggaatt
ctgctggagtttgatacctctgaaattatctacatgctcgaatctccagagctactgcgt
acaatggcgaataaagctgtcactttactgcaaggccatcaggtacaagaagtttctatg
aatagttttaatggcacaacaaataattaa
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