Xenopus tropicalis (tropical clawed frog): 100491060
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Entry
100491060 CDS
T01011
Symbol
sh3tc1
Name
(RefSeq) SH3 domain and tetratricopeptide repeat-containing protein 1 isoform X1
KO
K24313
SH3 domain and tetratricopeptide repeat-containing protein
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xtr04131
]
100491060 (sh3tc1)
Membrane trafficking [BR:
xtr04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
100491060 (sh3tc1)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_12
TPR_7
TPR_2
TPR_8
TPR_1
TPR_14
ARM_TT21_4th
SH3_1
TPR_NPHP3
SH3_2
ARM_TT21
ATG17_like
DUF5415
CCDC144C
Motif
Other DBs
NCBI-GeneID:
100491060
NCBI-ProteinID:
XP_004911312
Xenbase:
XB-GENE-5909214
UniProt:
A0A803JGM0
LinkDB
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Position
1:complement(24212200..24314135)
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AA seq
1369 aa
AA seq
DB search
MEATDASASGYHSRVYKLHPIEENECESETAALKPPESTHWTERTIQAVRLDDIIVENMK
EPPAVQPANNSKSIISSAKKAISALGPSGQPIITDFVHINDCLKNSSEKCSEQTETLISD
LCIHLVMVRNGVPDPHLQGELRNRLRLLENDNKEVVSVFSELSARLLSIESDKDVINVTF
KTFEEIWKFSTYYTLGFLNHCLENMFLGQSFWLSSPEEEDAGLQVCVKEESLNLIYRNLL
MEEETVAVLCADNLTRQAAVVDNALHVIYSDPPNEEFTVGWSHDKNSMEESKAPSKNLQF
EPLCPFHQWFLKTNSLSKLSDFISLEQKNKIAVGWTEATVSYESAAPDEITYCSGDIIEI
IGTFIESLKWFVGRNLTTSQVGFVKTSNVKPYASEQRKEHFTLPVSEEEKIFGKRESDFT
LEDAKDLLHRISNSDVCSVYRVDELDILRAPQSKEITSAITNAEDDPWKPKLEAFLQNNK
ECCPSEEASEPEHGTDNLSIEKRGATCEDSDFPNFNISEEPEKNEGFQMLLLFLNSEKYL
PGFRCIYDVSYGFLNALFHGYKEEEELVRYLSMARESAKKASMTLALTRICFLLGRLCTK
RHKFSQARVYFEEAIGVLNGDFRDIYLTSAIYMNLTAIYLKQKNNEKCSQMIDKAASLLI
GLQSHISSTEMESVILRYALKTSILNQDLFSETRSCLLLGQMYTRSRQFDEALPFIERLQ
VLINKTDSSEWCLPGYYFQLADIYSHKCLPHIALSCIKVASRGSCSFTDSLRKVDFIIGN
VPQLCGIKGGRLSFPTQISYYLRQALASAVTDQEQILSATIYRSLCQLCTQHKEYKKAKL
YILKALDPGVCSDMKSRVDIMISLGWLCILDGEYTTALGILDTVIKSCHCSSVQLGIIYN
LSAIAFKQTNRIKEAAEHYFKALVISKETGILQNQAAALANFGTLFLHLGANYLAEHFLV
KAVAIYSRLPNLENGVDFIHLLLILGHYYINGDQNERGRFYYEWAFLVAMEINHLESQLQ
AVQSLCHFYTTSEINEAQCIIYNEYQLSLARKMSDKDLEGQVLETISHLYLSLGTERACR
SALEYTKRSLGIFIDLQKKEKEAYAWLLSGKIYYILGQNELVDLYIQVAQNVAMCTGEAE
LGMQLFEAAGDIFFSGTHDRDKAVSFYRDCALPLAVKTVNVKAELRLCNKLAELLMNINS
YEDALEPAKMALELSVSLGNQLNERVSYHRLAGIYRQLGHSELAEHFYLKALSLCPSPME
LEEEAVYYMKVYFILGDIIFYDLKDPFDAAGYYNLALAAAMDLGNKKSQLQIYTRLATIY
HNFLVDREKSLFFYQKARSFASELNVRRMTLPSGQYNRAPTRTCVTSTV
NT seq
4110 nt
NT seq
+upstream
nt +downstream
nt
atggaggcgacagatgccagtgccagcggttatcattctagggtttataaactccatcct
atagaggagaatgaatgtgagtcggaaacagcagctttgaagccaccagagtcaactcat
tggacagagagaacgatacaagcggtgcgattggacgatatcattgtggagaatatgaag
gagcccccagctgtacagccggccaataattctaaatctattatttcttctgccaaaaag
gcgatttctgccctaggacccagtggtcaacctataattacagactttgtgcacattaat
gactgcttgaaaaacagttccgaaaaatgtagcgaacaaacggaaacacttatttcggat
ctctgcattcaccttgttatggtcagaaatggagttcccgatccacatctgcaaggggaa
ctcaggaacagacttcggctgctggaaaatgataataaagaggttgtgtccgtgtttagt
gagttgtctgctcgtttgctgtccattgagagtgataaggatgtcatcaacgtgactttc
aaaacctttgaagaaatatggaagttttccacttattatacactaggtttcctaaatcac
tgcctggagaacatgtttttaggccagtcattttggctgtcttccccagaagaagaagat
gctggccttcaagtctgtgtcaaggaggaatcattaaatctcatttatagaaacctctta
atggaggaagaaactgtggctgttttgtgtgctgacaaccttaccagacaggctgcagtc
gttgataatgcactacatgtgatatattcagacccacctaatgaggaatttacagttgga
tggtcacatgacaaaaattccatggaggaaagcaaagctccaagcaaaaatctccaattt
gaacctttatgtccatttcatcaatggttccttaagactaactccttatccaagctctct
gactttatttccttagagcagaaaaataaaattgccgtcggctggactgaagcaacagtt
agttacgaaagtgctgcccctgatgaaataacctattgcagtggggatattattgaaata
ataggcacttttattgaatctttaaagtggtttgttggaagaaacctgacgaccagccag
gttggctttgtgaagacgagtaatgtcaaaccctatgcatcagaacaaaggaaagaacat
tttacacttccagtaagtgaagaagaaaaaatatttggcaaaagagagagtgatttcact
ttggaggatgcaaaggacttactgcacagaatatcaaattccgatgtctgtagtgtctat
agagttgatgaacttgacattctaagggcaccccaaagcaaagaaataacatccgccatc
actaacgccgaagatgacccatggaaaccaaagctggaggctttcttacagaataataaa
gaatgctgtccttccgaagaagccagtgagccagaacatggaacagataacctttctata
gaaaagaggggtgcaacttgtgaagatagtgatttcccaaacttcaatatctctgaggaa
ccagagaagaatgaaggatttcagatgttacttttattcttaaacagtgagaaatatctc
ccaggatttagatgtatctacgatgtctcatatgggtttttaaatgcattattccatgga
tacaaagaggaagaagaactggtccggtatctgagcatggcgagggaatctgcaaagaaa
gcaagcatgacgttggctttgaccaggatctgttttcttctgggcagactatgtactaaa
cggcacaaattctcccaagctagggtttattttgaagaagccattggggttctaaacgga
gattttagagacatttatctcactagtgcaatctacatgaacttgactgccatttattta
aaacagaagaacaatgagaaatgcagccaaatgattgacaaggccgccagtcttcttata
ggattacaaagccatattagtagtacagagatggaatccgtcatactcagatatgctttg
aagacctcaatcctcaaccaagacctgtttagtgaaacaaggtcgtgtctgcttttaggg
caaatgtatactcgcagcaggcagttcgacgaggccttgccttttatagagcgcttgcag
gttttaattaataaaacggattccagcgagtggtgcttaccaggatactattttcagctt
gcagatatttacagtcacaaatgtttgccacacatagcactgagctgtataaaagtggct
tctcgtggatcatgcagtttcactgattcattgaggaaagtggactttatcattggaaat
gtgccccaactttgtgggatcaagggagggcgattgtccttccccactcagatttcctac
tacctgaggcaagcgcttgcatctgcagtcaccgaccaagagcagatcctctctgcaact
atataccgcagcttatgccaactatgcactcagcataaagagtataaaaaggctaaattg
tatatattaaaggccctagaccctggtgtttgttctgatatgaaatccagagtggatata
atgatttcccttggctggctttgtatacttgatggagaatataccacagcgctaggtatt
ctggatacagttataaagtcgtgccattgctcatcagtccaactgggaatcatatacaat
ctcagcgctatagccttcaaacaaacaaatagaattaaagaagcagccgagcattacttc
aaagccttggtgatttcaaaggagacgggcattttgcaaaaccaagccgcagcactggcc
aattttgggaccttattcctgcatctgggagccaactatctggcagagcacttcttagta
aaagccgtagctatttactcaaggcttccaaacctggagaacggggttgactttatccat
ctgctacttatacttggacactattacatcaatggagaccaaaacgaaagaggacggttt
tattacgagtgggcattccttgtggcaatggaaataaatcacttggaaagccagctccaa
gcagttcagtcactgtgccatttctacaccacctctgaaataaatgaagctcagtgtatc
atctacaatgaatatcagctttcgttggcaagaaaaatgtccgacaaagacctagaggga
caggtgctggaaaccataagtcacctgtatttatccttaggcacagaaagagcctgccga
tcagcgctggaatacaccaaacgaagtcttgggatttttattgatctccaaaaaaaagag
aaggaggcttatgcctggctgttgtcagggaagatctactatatcctgggccagaatgaa
ctggtggatctctatattcaggtagcccagaatgtggccatgtgtacaggagaggcagaa
cttggcatgcagctgtttgaggcggcaggagatatatttttcagtggaacccatgaccga
gataaagcagtgtcattctacagggactgtgcactcccgcttgctgtgaagaccgtgaat
gttaaagcagagcttcgcctgtgcaacaaactggccgagttattgatgaatataaatagc
tatgaggatgcgttggagccagccaagatggccctggagctcagtgtgagtttaggaaat
cagctgaatgagagagtgtcgtaccacaggctcgctggcatctataggcaattgggtcat
agtgagctggcggaacacttctacctgaaggcgctgtcactttgcccctcccccatggaa
ctggaagaggaagctgtgtactacatgaaggtctactttatcctgggggacattatattc
tatgacctgaaggatccttttgatgcggcgggatattacaatcttgcgctggcagcggct
atggatctgggtaacaaaaagtcccagctgcagatctacacccggctggccaccatttat
cacaactttctagtcgatcgggaaaagtctcttttcttttatcagaaagccaggagcttc
gcgtcagagctgaatgttcggagaatgactttaccctcagggcagtataatcgggcgccc
actcgtacctgtgttacatcgactgtgtga
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