Xenopus tropicalis (tropical clawed frog): 100491272
Help
Entry
100491272 CDS
T01011
Symbol
trerf1
Name
(RefSeq) transcriptional-regulating factor 1
KO
K26583
transcriptional-regulating factor 1
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
xtr03036
]
100491272 (trerf1)
Chromosome and associated proteins [BR:
xtr03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
MiDAC complex
100491272 (trerf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C2H2_6
ELM2
zf-C2H2
zf-C2H2_4
Myb_DNA-binding
AMG1_III
Myb_DNA-bind_7
zf-C2HE
Motif
Other DBs
NCBI-GeneID:
100491272
NCBI-ProteinID:
XP_002934726
Xenbase:
XB-GENE-940630
UniProt:
F6ZGG0
LinkDB
All DBs
Position
5:complement(15066495..15172596)
Genome browser
AA seq
1143 aa
AA seq
DB search
MEDQQLFKGSLALGTNEHLYFQQLQNEASSQSLDHSYDSLDTNASESSSSSPHLSQDSRD
LTLPAATKSVRSVDAAVPANWTYSGSGNHVQGRNHLNSYDQSLPWNSQAQSEVIDSFQLP
CFNQLSENRSKMTSGALHKLDSFTKVFARQNLRNPSASQGLHEQPSLMDSESALRQLLSV
KPGAEQQTLTATMERFQQMQPNQANSGQKHQMQAMQHPQQHIYYEYPQHGSQMHSQSLMQ
QGQQYLQQMQSHQVLPQQAQQMQQSHYYIQAAQSGQQRAASQEIQQQRQFSGQAPQYYHS
QTPRPELHPTLQSLHHHHVQMQPPPYHRDCNQKAEYFQQDQTQAMQLIQLGSVPQYVYQN
SQPFRHVYKQNMAPQQQSLHQESSQQKPYESQPQVVMETAVGFTNVDAVDNYNDVGGIGN
AISQHAVLAPDSTFMVNSRGTHPSSTAAWPQIVSDASLPTVSPDHSQNRGVYSERPDSRN
RLTCSMCFKEFKSLPALNGHLRSHGGVRPSSLKQEEGEKQQGSEADSVPPIVMPVSVPVT
LPLPEPSLQTSCREGKEQPESCVSDDDMPVLTRMSSSPPSPPKAVSSCASSEMIRKIQQS
SSKSGNSEESLKPQQEKRKYRHRPEPLFIPPPAFIVSSCHSGATLYQSQLRSPRVLGDSL
LGGNQELPTYTPPPMLSPVRQGSGLFSSVITSVHNAHLPLTPLTPSPRVLLGRPNSIDVG
CTTVTPGPGEQTTDVEPRINIGSRFQAEIPELQAPLSLLAEVDNATLVWKPLPDLESRDS
QQRVDVFLSLSCSSVVPGGGTNLEYALHVLYECNGNVTGALETLLLKCPPRLHTHPLANY
HYAGSDKWSATEKKNFNKALNTCNKDFFHVQKMIKSKTVSQCVEYYYTWKKILHLGRTGH
RTRCAVVNNEDGMTSADDDAEEDEELEDKRYESGCELMQKSPDLPRAAGAYGVPTIGSFV
CEMGNCGAIFCSRQALNGHARIHGGTSVPTKGFPVPGSTRTKSNTQSGYCSVKSSPAHSN
TSGETDMSTIFPCKVCGKVFFKIKSRNAHMKTHRQQEEQQRQKAQKAAVAAEMADTIART
IVRTTVPVEHILPFDHPSLVKSMEQDFDNDVAQDLEDVLEETDIIHADLLLDDEDLLQDG
AVL
NT seq
3432 nt
NT seq
+upstream
nt +downstream
nt
atggaagatcagcagctattcaagggcagccttgcgcttggcactaacgaacatttgtac
tttcaacaactacagaatgaagcaagcagccaatctctcgaccacagctacgactcgctg
gacacgaatgcctcagagtcttcttcgtcgtctcctcatttatcccaggactccagggat
ctcactttgcccgcagctactaaaagtgtcagatctgtggatgcagccgtgccggccaat
tggacttattctggttctggcaaccacgtccaggggagaaatcatttaaacagctacgac
caaagcttgccgtggaattcccaggcgcaaagtgaagtcatagactctttccagctgccc
tgttttaatcaactcagcgaaaaccgatccaaaatgaccagcggtgctttacacaaactc
gactcatttacaaaggtatttgcgcggcagaatttacgcaatccttccgcatctcaggga
cttcatgaacagccatctctaatggatagtgagagtgcgctaaggcagctgctttctgtc
aagcccggggcggagcagcaaactcttacagcgaccatggaaaggttccaacaaatgcag
ccaaaccaggcaaattcgggccagaagcaccagatgcaggccatgcagcacccacagcag
catatttactatgaataccctcagcatgggagccagatgcattcacagtctttaatgcaa
caagggcaacagtatttgcagcaaatgcagtctcatcaggtattgccgcagcaagcgcag
caaatgcaacaatctcattattacatacaagccgctcagtcggggcagcaacgtgcagct
tctcaggaaatacagcagcagcgccagttctcaggtcaagcgcctcagtattaccattcg
cagacaccgaggccggagctgcacccaacgttgcagtcgctgcatcatcatcacgtgcaa
atgcaaccgcctccgtatcacagggactgcaatcaaaaggctgagtatttccagcaggat
cagacgcaagccatgcagctcatccagctggggtcagtgccgcagtatgtctatcagaac
tcacagccattcaggcacgtgtataagcagaacatggcgccgcagcagcagtctctgcac
caagagtcaagccagcagaagccatatgaaagccagccacaagttgtcatggaaactgcg
gttggatttacaaatgtagacgccgtagataattataatgatgtgggtggtattggaaac
gccatttcccagcatgctgtcctggcaccggactctacattcatggtgaatagcagagga
acccatccgtcttctactgctgcctggcctcagattgtgtcagatgccagtcttcccact
gtttcaccagatcacagtcaaaatagaggcgtgtattctgagaggccagactccaggaac
cgactcacgtgctccatgtgctttaaggaattcaaaagccttcctgccctgaacggccac
ctgaggtcccatgggggggtgagaccctccagcctaaagcaagaggaaggagagaagcag
caggggagcgaggcggatagcgtccccccaattgttatgcctgtgtctgtgcctgtaacc
cttcccctgcctgagcctagcctgcaaaccagctgcagagaggggaaagagcagcccgag
agctgcgtgtccgatgacgacatgccagtccttacacggatgtcttcctccccgccgtcc
ccgcccaaggcggtcagctcttgtgcatcttctgaaatgattagaaagattcagcaaagc
agctcgaaatcgggcaactcagaagaaagcctcaaacctcagcaggaaaagagaaagtac
cgacatcggccagaaccgctcttcatccctcctcctgccttcattgtcagctcatgtcac
tcgggtgccaccctgtaccaaagccagctgcgctctccccgcgtcctgggggacagtttg
ctggggggaaatcaggagttacctacatacactccccctcccatgctgagccctgtgcgc
caagggtccggcctgttcagcagcgtcatcacatcagtacacaacgcacacctcccgctg
actccgctcacaccttcacccagagtgctgcttgggcggcccaacagcattgatgtcggc
tgtaccacagtaacaccgggaccaggagaacagaccactgatgttgaaccacggattaat
atagggtcaagattccaggcagagattccagaacttcaggctccgttatcccttttggca
gaagtggacaatgcaactttggtttggaaaccgttgccagatctagaaagcagagactcc
caacaaagagtggacgttttcctgagcctatcctgttccagcgtggtgcctgggggcgga
accaatctggagtacgcattgcatgtgctgtatgagtgcaacggtaacgtcacgggtgcg
ctggagacgctgcttttgaaatgtcccccaaggctgcatacccaccccttagccaattat
cactatgcagggtcagacaaatggagcgctacagaaaagaagaactttaacaaggcatta
aacacctgcaacaaagacttttttcatgtacaaaagatgattaagtcaaagaccgtgtca
cagtgtgtggaatattactacacctggaaaaagatcttacacctggggagaactgggcac
agaactcggtgtgctgtggttaataatgaagatggtatgacaagtgctgacgatgacgca
gaagaggacgaagaactggaagacaaaagatatgaaagtggctgtgaactgatgcagaaa
tccccagacctgcctcgggccgctggcgcatatggtgttccgactattggctcgtttgtt
tgtgagatgggcaactgtggcgctatattttgttcccggcaggctctgaacgggcatgct
cgtattcacggaggaacaagtgtaccaactaaaggctttccagtcccaggtagcactaga
acaaagtccaacactcagagtgggtactgctcagtgaaaagctctccggctcacagcaac
accagcggagagactgatatgtccacaatttttccgtgcaaagtgtgtggcaaggtattt
ttcaagatcaaaagcaggaacgcacacatgaaaactcaccggcagcaagaagagcaacag
agacaaaaagcccagaaagctgcagtagcagcagagatggcagacaccattgcaaggacc
atagtaaggactacagtgcctgttgagcacattctgcctttcgatcacccgagccttgta
aaaagcatggagcaagactttgataatgatgttgcccaagatttggaggatgtcctagaa
gagacagacattattcatgctgatctactcctggatgatgaagatttgcttcaagatggg
gctgttctgtag
DBGET
integrated database retrieval system
