Xenopus tropicalis (tropical clawed frog): 100491433
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Entry
100491433 CDS
T01011
Symbol
palb2
Name
(RefSeq) partner and localizer of BRCA2
KO
K10897
partner and localizer of BRCA2
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03440
Homologous recombination
xtr03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
100491433 (palb2)
03460 Fanconi anemia pathway
100491433 (palb2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xtr03400
]
100491433 (palb2)
DNA repair and recombination proteins [BR:
xtr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
100491433 (palb2)
FA (Fanconi anemia) pathway
Downstream FA components
100491433 (palb2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PALB2_WD40
WD40_CDC20-Fz
Motif
Other DBs
NCBI-GeneID:
100491433
NCBI-ProteinID:
XP_002932499
Xenbase:
XB-GENE-5867929
UniProt:
A0A6I8R3U5
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All DBs
Position
9:21398214..21412004
Genome browser
AA seq
1417 aa
AA seq
DB search
MEDAVGAKSLTSEEKEKIKERLCLLKKEYKRTFNRLRRSQRAERVKTHVQKTIAEQNHLL
SQEGAGPGNRGSQSSIASNDADLQSKSTRPDTERKPCVTFNFEPEILCAEGSSPCCSVSG
SSGQELDGTEKPQDMGQAFDTTIQRSRLKLRRSTKRRCSADQSLSDGSLFSDTLKDTDGL
QGKVMDRSDCGLPVFKKSAKHPMDQNHVNLHDFSVGPDFGTENLNTAALDTGNITDFLGG
NVDASPVTREQCLDNKIQVKSGFTEVTIGKMQEPPMTPGLENIKEPLLSPCLGKIRKSSL
LLCTDKPREPSLSPNTEKTRTPPLCLSPNIDKTTSPLRSRQKDKTEPPPADIETSRELSL
SSYMEQNNTLAQKDQTSCDLGLTLQQGHTHSTPHIPTPLCSDEQNLLNQINNVQDTTTNT
GEDNNPLNSCTLVEGLLFPVEYYVRTTRRMSNCQRKVDLDAIIHSQLGTSRRGSRGKPRS
RRVSGEEGSIYTSPSPMACFASEFISNALCLTPLSHQTPNSNKHGANRGRRGRGRYSSPK
LELPQVSSSHDVRKRSSLLEPDAVASPISNGSQSEKENCEEQTTPRLDPHSAHLFAPYRT
EQPHVTEGLNSEQIYILPNSDQKSKYNLRSRNSASLFHYSLPDDMDDFDNGSINQNKLKR
SIEFTDNQKSERQRSCLTPSSPFPALSSRMSLEKLLSCLEIKDFHLPDDDFGFLKLQKLK
SLSQLEPFVPLPTTETGRTKPDNTTLPGTDYSTAFQATIDSSVLAIKPSACTLYNGKSNA
APPDKTASKAILCVEIPNAPSQEHVAYSAHSVELPPPVSQVRKSQETVLNHLQKRSDDIR
PCEVDVKPTGNESVPHASPLPSKHLKTQTNSEIKLSLHPCEELGASGSSEFQIKSSAPQF
PLKEVPCSVLLATSMCSMPLETSNDTELASCTPGFPFLGSTPAALSAPSPGGSVLTPCSP
KLEKPTATINKTLPAQSSADELKSLRLGEVIEKEVNESKAEQCIVLAPGSGSLSQYGDTA
VNVKPILMKESLQEVYHVENCAEEFITEQSCGSQHENPLWTSEGGHLRLISQIQDGCFGK
CMIDLCSVQWEFPSGTEMCIVGASESAISLWRPHSAGRQWEAAHSWIFTEMPVIQILPLP
GEKNIMCVALGNLEILEIWALFSCPRGLSWEQRVVKLGHTETARGLSKLRLVCSSGLGPN
QEVEILQLSEKGRTMRSHTLQPPEASILSFSEVEGEADAVVGSTVDNKVVIWNGATGQLL
STINVGELCGDSACLSAYSDSGLLFLLLASPYSNSLEAARKCIFTLIAANPKSERCAHVM
SYTLPEGQDGRYLEGDIISHNAAAVLTSGSVAFWDLPRSHCSALLITNVDIHWSLVRWTH
SMSQVLAGQKNGTIYIYSYTGLAPKEKIKEFEKNGIS
NT seq
4254 nt
NT seq
+upstream
nt +downstream
nt
atggaagatgcagtgggtgctaaatccctcacgtcagaagagaaagagaagataaaagaa
aggctttgcttgttaaagaaggaatacaagagaacatttaaccgtttgcggcgatcccag
agggccgagcgggtgaaaacacatgtgcaaaagaccattgcagagcagaaccatttgctt
agccaagaaggagccggacctggtaacagaggatcacaaagcagcatcgcaagcaatgat
gcagatttacaaagtaaatcaaccagaccagacacagagagaaaaccatgtgttacattt
aacttcgagccagaaatcctttgtgctgaaggcagctccccatgttgttctgtgagtgga
agtagcgggcaggagctcgatggcacagaaaagccccaggatatggggcaagcgtttgac
accacaattcagagaagcagattgaagttaaggagatcaacaaagaggcgctgttctgca
gatcagtctctttctgatggctccttgttcagtgatacactgaaagatacagatggatta
cagggtaaagtgatggataggagtgattgcgggttgccagtttttaaaaagagtgcaaaa
catcccatggaccaaaatcatgtgaacctgcatgatttctctgtcggtcctgattttggc
acagagaatttgaacactgcagcactggacactgggaatattacagattttttggggggg
aatgtggatgcttctccagttaccagagaacaatgccttgacaacaagatacaggttaag
tcaggattcactgaagtcactatagggaaaatgcaagagccacccatgactcctggcttg
gaaaacataaaggaacccttgttgtctccttgcttgggcaaaataaggaaatcctcattg
cttctatgtacagacaagccaagagaaccctctttatctcctaatacagagaaaacaagg
acacccccactttgtctaagtcctaatattgacaaaacaaccagtccattacggtctcgt
cagaaagacaaaacagaacccccacctgccgatatagagacatcaagggaactgtcattg
tcttcttacatggaacaaaacaatacattggctcagaaggaccagacaagttgcgatctt
gggcttacactacaacaggggcacacacattctactccacacatacctactcccttgtgt
tcagatgaacagaatcttttaaaccaaataaacaatgtccaagatacaaccactaacaca
ggggaggacaacaacccactgaactcttgtactcttgtggagggacttctattccctgtt
gaatactatgtgaggacaacacgtcgcatgtctaactgccaaagaaaagtggaccttgat
gccattattcacagccagcttggtaccagcaggagagggtcacgaggaaaaccaaggtca
aggagagtaagcggagaagagggaagcatttacacatctccatccccaatggcttgcttt
gcatcagaatttatatctaatgctttgtgtttaacaccactcagccaccagactcctaac
agcaataaacatggagcaaatcggggccgaagggggaggggaagatactccagtccaaag
ctcgaattacctcaggtatcctcctcacatgatgttaggaagagatcctccttgttggaa
cctgatgcagtcgctagcccaatttctaatggttcacaaagcgaaaaagagaattgcgag
gaacagacaacccccaggttggatcctcattctgcccatttgtttgccccttacagaaca
gaacagccacatgtgacagaaggtttgaattctgaacaaatctacatcctgcccaattct
gaccagaaaagtaaatacaatctaagatcaagaaactctgccagtctttttcattattcc
ttaccagatgacatggatgactttgataatggctccattaaccaaaataagctgaaacga
agcattgagtttacagataaccagaaatcagagaggcagagatcatgccttactccatct
tctccattccctgctctgagcagcagaatgagcctggaaaagctattgtcttgtttagaa
attaaagatttccatttgcctgatgatgattttggtttcctgaagcttcaaaagctgaag
tcattaagtcaactggaaccttttgtccccctaccaactactgaaactggtagaacaaaa
cctgataatacaacgctgccaggtacagattattctactgcatttcaggccaccatagat
tcgagtgtccttgccataaaacccagtgcatgcactttatacaatggaaaatctaatgca
gcgccacctgacaaaacagcctctaaagcaatactttgtgttgaaataccaaatgcacca
agccaagagcatgttgcttattctgcacattctgtagaacttccgcccccagtctcccag
gtcaggaaaagtcaggaaactgttctaaaccatttacagaaaaggagtgatgacatcagg
ccttgtgaggttgatgtgaaacccactggtaatgagtcggtgcctcatgcatctccactg
ccttccaaacatcttaagacacagactaacagtgaaatcaaactctccttacatccttgt
gaggagttgggggcttcaggatcttcagagttccagataaaatcatctgctccacaattt
cctttaaaagaagttccctgcagtgtccttttagcaacctcaatgtgttccatgcctcta
gaaacatcaaatgacactgagctggcttcttgcactccaggcttccctttcttgggttcc
acgcctgctgccctttccgctccatcaccgggaggctctgtccttacgccatgcagtcct
aaattggaaaaaccaacagcaaccataaataagaccttaccagcacaaagttctgcggat
gaattaaaaagcctgagattgggtgaggtcatcgaaaaagaagtaaatgagagtaaggca
gagcaatgcattgtactggcacccggttcaggcagcttgtctcagtacggggacactgca
gtaaatgtgaaacccatacttatgaaggagagtctgcaagaagtctatcatgtagagaat
tgtgcagaagaatttatcacggaacaatcttgtggatctcagcatgaaaatcctttgtgg
acatctgagggtggtcacctgcgtctcatctcacagatacaggatggctgctttgggaag
tgcatgatagacctttgttcagtacagtgggagtttccttctgggacagagatgtgcatt
gtgggtgccagtgaatctgccatctctctctggagaccacacagtgcagggcggcagtgg
gaagctgctcacagctggatctttactgagatgcctgtcatccagatactccctcttcca
ggagagaagaatattatgtgtgtggctttgggaaaccttgagattctggagatctgggct
ctgttctcctgtccaagaggtctgagctgggagcagcgagtggtgaagctcggacataca
gaaacagctcggggcttgtccaaacttcggctggtctgcagcagtggcctgggcccaaac
caagaggtggaaattttgcagctgtcagagaaaggaagaaccatgaggtctcatacactg
cagcccccggaggcaagtatcctgtccttttctgaagtggaaggagaggcggatgctgta
gtgggctccactgtcgataacaaagtggttatttggaatggtgccacagggcagctgcta
agcaccataaatgtaggggaactctgcggtgactcagcctgtttaagtgcatattccgac
tcaggtttgcttttcctgctcctcgccagtccttatagcaacagcttagaggcggcacgg
aaatgcatttttacactgattgcagccaatcctaagagtgagcgttgtgcccacgttatg
tcttatactctgcctgaaggacaggatggaaggtatttggaaggtgatatcattagccac
aatgcagccgcagtattaaccagtggaagtgttgcattctgggatttacccagaagtcat
tgctctgctcttctcattaccaatgtggacattcactggtccttggtaagatggacccac
agcatgtcacaagttctggctgggcagaaaaatggaactatctacatttattcttacaca
ggattggccccaaaagaaaaaattaaggagtttgagaaaaacggaatcagctga
DBGET
integrated database retrieval system
