KEGG   Xenopus tropicalis (tropical clawed frog): 100491855
Entry
100491855         CDS       T01011                                 
Name
(RefSeq) short transient receptor potential channel 2 isoform X1
  KO
K10803  DNA-repair protein XRCC1
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    100491855
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:xtr03400]
    100491855
DNA repair and recombination proteins [BR:xtr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     100491855
SSDB
Motif
Pfam: XRCC1_N
Other DBs
NCBI-GeneID: 100491855
NCBI-ProteinID: XP_031753282
Xenbase: XB-GENE-6033290
UniProt: A0A6I8R2W6
LinkDB
Position
2:complement(178832160..178841983)
AA seq 448 aa
MTSLQGGAVRAKNAGNSGIQEVGVRGLARSWAEYPPPMAPITVRHIVSFSSQDPKHPVEN
LLSEISAQPWLISPRERGGHLRAELQLEKACHIAYVDIGNCGSAFLQIDVGRSSWPLDRP
YVTLLPSTTLMSPADSKQRRGPNGVRMFKEGDFLVDASAERWDRVRISASQPFNKRDLFG
LSFIRFRSALEEEQHEAEGPPPKSEDPKMDRTPDSETPQLTRGTESRRENPPEGEGQKSQ
NRLPPSRVPPHTANPACLSRTALMVLTAAKSRKRRFADTTPPAPPSPHVLGEKSPVPSGS
NPAHTPPTPPQKEARNLLGRRRLRMEGPPGRVRARGPERQAAEMGGPPGRRGHRPRTPRP
AGKEQQCSSCPICGGYFQLRYLPSHASTCGEDPPPRVVSLSLSEDSSSSDTDTDIIIPEE
AESWVSCPICSFRFPSNEIEIHANTCGE
NT seq 1347 nt   +upstreamnt  +downstreamnt
atgacgtcattgcagggcggagcggtgcgggccaaaaacgcgggaaattcggggattcag
gaggttggagtccggggtctagccaggtcttgggcagaataccccccccccatggccccc
attacagtcaggcacattgtgtccttcagctcccaggatcccaaacacccggtggaaaat
ctccttagtgagatctcggcgcagccctggctgatctccccccgggagcggggcgggcac
ctgagggcggagctacagctggagaaggcgtgtcacatcgcttacgttgatatcgggaac
tgtggttctgccttcctgcagatcgatgtgggtcgctccagttggcctttggacagaccc
tacgtgactctgctccccagcaccaccctcatgtcccccgcagattccaagcagagaagg
ggccccaacggggtgcggatgttcaaagaaggggactttctggtcgacgccagcgccgag
aggtgggaccgggttcggatcagcgccagtcagccctttaataagagagatttattcggc
ctctcgttcattcgcttccgctctgcgctggaggaggagcaacacgaggccgaagggccg
ccccccaagagcgaggatcccaagatggacagaactcccgactccgagaccccccaactt
acacggggaacagagagcaggagagagaacccccccgagggagaggggcagaagagccaa
aaccgattgcccccctctagggttcccccccacaccgctaaccccgcctgcctgagccgg
acggcgctgatggttctgactgcagccaagtcacgcaagcgccgattcgccgacacaacc
cccccggccccaccctcgccccacgtgttgggagagaagagcccagtgccctcaggctct
aaccccgcccacacccctcctacccccccacagaaggaggccaggaatctgcttggcaga
aggaggctgaggatggagggccccccgggaagggtcagagcacgggggcccgagcgacag
gcagcggagatggggggccccccgggaaggaggggccatcgccccaggacaccgagaccc
gcggggaaggagcaacagtgcagcagctgccccatatgtggagggtacttccagctgcgt
tacctccctagccacgcctccacgtgtggagaggacccgccccccagagtggtctccttg
tctctatcagaagattcttcctcctccgacaccgacacggacattattattcctgaggag
gcggagtcctgggtctcctgccccatctgttccttccgcttccctagcaacgagatcgag
attcacgccaacacctgcggggaatag

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