Xenopus tropicalis (tropical clawed frog): 100492001
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Entry
100492001 CDS
T01011
Symbol
tnpo1
Name
(RefSeq) transportin-1 isoform X2
KO
K18752
transportin-1
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100492001 (tnpo1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xtr03019
]
100492001 (tnpo1)
03009 Ribosome biogenesis [BR:
xtr03009
]
100492001 (tnpo1)
Messenger RNA biogenesis [BR:
xtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
100492001 (tnpo1)
Ribosome biogenesis [BR:
xtr03009
]
Eukaryotic type
Pre-40S particles
Export and cytoplasmic maturation factors
100492001 (tnpo1)
Pre-60S particles
100492001 (tnpo1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HEAT_EZ
HEAT
HEAT_GCN1
TPR_IMB1
HEAT_2
Arm
TOR1L1_N
IBN_N
Vac14_Fab1_bd
Cnd1
TPR_IPO5
HEAT_EF3_N
HEAT_MROH2B_C
TPR_DNAAF5
PDS5
Adaptin_N
MMS19_C
HEAT_GCN1_C
Ltn1_1st
TPR_TTI1_C
Dopey_N
CandA_N
PIK3R4-like_middle
DUF3689
Motif
Other DBs
NCBI-GeneID:
100492001
NCBI-ProteinID:
XP_002934884
Xenbase:
XB-GENE-493792
UniProt:
A0A8J0QQ75
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All DBs
Position
1:182949808..182996358
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AA seq
890 aa
AA seq
DB search
MEYEWKPDEQGLQQILQLLKESQSPDNNTQRAVQQKLEQLNQFPDFNNYLIFVLTKLKSE
DEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDASPLIRATVGILITTIASK
GELQNWPELLPKLCGLLDSEDYNTCEGAFGALQKICEDSAEILDSDILERPLNVMIPKFL
QFFKHSSPKIRSHAVACVNQFIIGRTQALMLHIDSFIENLFALATDEEPEVRKNVCRALV
MLLEVRMDRLLPHMHNIVEYMLLRTQDQDENVALEACEFWLTLAEQPICKDVLCRHLAKL
IPVLVNGMKYSEIDIILLKGDVEEDEAIPDSEQDIRPRFHRSRTVAQPHEEDGIEEDDDD
DDELDDDENISDWNIRKCSAAALDVLANVFREELLPHILPLLKELLFHPEWVVKESGILV
LGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDMYLKP
LMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLI
LYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNVLKDEDKDLFPLLECLSSVATALQSG
FLPYCEPVYQRCVNLVQKTLQQSMLHNAQPDQYESPDKDFMIVALDLLSGLAEGLGGHIE
QLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKSCIADFMPILGTNLNPE
LISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGY
VCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPGGVVQDFIFFCDAVA
SWINPKEDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAAYYGV
NT seq
2673 nt
NT seq
+upstream
nt +downstream
nt
atggagtacgagtggaagccggacgaacagggcctccagcagatactgcagctgcttaaa
gagtctcaatccccggacaataacacgcagcgagccgtgcaacaaaaattggagcagctg
aaccagtttccagacttcaacaactatctcatttttgttctcacaaagctaaaatcagaa
gatgaaccaacacgatcactaagcggcctgatactgaaaaataatgtgaaggcacatttc
cagaacttccccaatggggtaactgactttattaaaagcgagtgcctaaataatataggt
gatgcttccccattaattcgtgcaactgtaggaatcttgataacaacaattgcttctaag
ggagagttacagaactggcctgaacttttgccaaagttatgtggtcttttagattctgaa
gattacaacacctgtgagggagcctttggtgctcttcagaaaatttgtgaagattctgct
gaaattttagacagtgatattttggaaaggccactaaatgtaatgattccgaagtttttg
cagtttttcaagcacagcagtcctaaaatacggtctcatgctgtagcttgtgtcaatcag
ttcatcattggaagaacacaagcacttatgttacatattgattcctttatagagaatttg
tttgctttggcaactgatgaagagccagaggtgcgcaaaaatgtgtgccgagcgctggtt
atgctgcttgaagttagaatggatcggttgcttcctcatatgcataatattgtggagtac
atgctgctacggacccaggaccaagatgaaaatgttgctttggaggcttgtgaattttgg
ctaactttagctgaacagccgatttgcaaagacgttctgtgtagacatcttgcaaagctg
atacctgtgttagtaaatgggatgaaatattcggagattgatattattttgttaaagggt
gatgttgaagaggatgaagctattcctgatagtgaacaggatatccggccacgttttcat
agatcgcggacggtggctcaacctcatgaggaagatgggattgaggaagatgatgatgat
gacgatgaacttgatgatgatgagaacatatctgattggaatataagaaaatgttctgcg
gcagcacttgatgtacttgccaatgtgtttcgtgaggaacttttgccacacattttgcct
cttttgaaagagctacttttccatccagaatgggtagttaaggagtctggaatcttggtt
cttggtgcaattgccgaagggtgtatgcaaggcatgattccttatctcccagagcttatc
cctcacctcatacagtgcctctcagataaaaaagctcttgtgcgctctattacttgctgg
acccttagtcgctatgcacactgggtagttagccagcccccagacatgtatttaaagcca
ttaatgacagagctgctaaaacgtatcttggacagcaacaaacgtgtacaagaagctgct
tgtagtgcctttgcaactctagaagaagaggcttgtaccgagcttgttccttaccttgcc
tacattctcgatactctagtttttgctttcagtaaataccagcataaaaacttacttatt
ctttatgatgcaattgggacattagcagattctgttggccatcatttaaataagccagag
tatattcagatgcttatgcctcctctgattcaaaaatggaatgtattgaaggatgaggat
aaggatctctttcctctacttgagtgtctctcttctgttgccactgcacttcagtctggg
tttttgccatactgtgaacctgtgtatcagcgttgtgtgaacttggtacaaaagactctt
caacaatctatgttacacaatgcacagccggatcagtatgagtctccagataaagatttc
atgatagtggctctagatttgttaagtggattagcagaaggcctcggaggtcacattgag
cagctggtagctcggagcaacatccttactttgatgtaccaatgcatgcaggataaaatg
ccagaggtacgtcagagttcatttgcattgctgggagatctgaccaaggcatgttttcag
catgtcaagtcatgtattgctgattttatgcccattttaggaaccaatttaaatccagag
ttaatatctgtttgtaataatgcaacatgggcgattggggaaatatccatccaaatgggt
attgaaatgcagccttatataccaatggtattgcaccagcttgtagaaataattaataga
cccaacacaccaaagactctcttagaaaatacagcaataacaattggtcgtcttggttac
gtttgtcctcaagaggtggcccccatgctacagcagtttataagaccctggtgtacttcc
ctgaggaacattagagacaatgaggagaaggactctgcttttcgtggaatttgtacaatg
atcagtgttaatcctggtggtgttgtccaggattttatatttttctgtgatgctgtcgca
tcatggattaatccaaaggaagatctaagagacatgttctgtaagatccttcatgggttt
aaaaaccaagtaggagatgaaaactggaggcgtttctcagaccagtttcctcttcctctt
aaagaacgtcttgcagcgtactatggagtttaa
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