Xenopus tropicalis (tropical clawed frog): 100492056
Help
Entry
100492056 CDS
T01011
Symbol
pkd1l1
Name
(RefSeq) polycystic kidney disease protein 1-like 1 isoform X1
KO
K04987
polycystin 1L1
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
xtr03037
]
100492056 (pkd1l1)
04040 Ion channels [BR:
xtr04040
]
100492056 (pkd1l1)
Cilium and associated proteins [BR:
xtr03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
100492056 (pkd1l1)
Ion channels [BR:
xtr04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
100492056 (pkd1l1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
REJ
PKD
Polycystin_dom
PLAT
PKD_4
PKD_channel
Motif
Other DBs
NCBI-GeneID:
100492056
NCBI-ProteinID:
XP_012820943
Xenbase:
XB-GENE-480146
UniProt:
A0A6I8Q1B4
LinkDB
All DBs
Position
6:58856648..58931650
Genome browser
AA seq
2682 aa
AA seq
DB search
MGTLQVLFCIYLSTPAVFSNILQNTVSIVTNGTFFSTETNIIFKAVTSESGPVHFVWNFG
DKSLPESTYNSVISKKYSIPNSYNVIVNASSPVGTVVSEVYTIFIQKKVIPNRLIARPSV
LINSTVTFECRINSGTNISYLWNFGDETIRFGKITDTHVYMREGEYTVNVSIFNNVSAAF
LTKQIFVVRELCLPPPVKHMGPQKIQIRRYEQLCLGVTFEAEIMCNISQGLHYFWSFVKS
NGNSVILPNYINDRKQKITVPGFLLEYENYTAVARVQIVGNVVYSNYTVLLEVLPSDPVS
VIAGGTHFLIDKSTVTHFKLDGSASFDPDYPEASLRFHWKCIPVSLYSDSCFNTAALNPL
QTDGSIIHFPTALLNEKFDQFLISLTVSNGNRRSPVAQAVLSISSRPNFRDVQIICIECK
GYTVNWNEKFSVQVVCTECREAEISYSWELYSINTTEVESSDGPFCSVLEILGSSSLFGT
PLPSVEIFTDPPITQIISGDIFDEHRLTEEAYLRLDPCPKTVPSAPIHGIHGLLEEISSG
GRPSRSKRSEYTTALRNISHEQSGEQTNFNGTYSGFLIGGGEGGADLFNLTEVPTHSDLE
VHCIGIQEGKKGSGGRPEDPEGERYGSTRPHENEDQKGDEILNPSKAAAVSPVTSMLDWK
TQQISKSTFRGFVTTDLSSQVLTFKPFSLKPGKMYMLDVSLASRGNEIGKSQLYFTVNEM
APRMTCQVQPNEGMELYTVFSIFCTSGKEDLYYDFSYQVGRRSARKKLYEGRDIQYYFNL
PAGDQTDGYQVTLFTQITNMYGSQTKPCPVNVTVWPSFGKNTSTDFIAEQLYHHGLKNLS
VLLLMENHIEIRNYITLLTVVLNKLYSEETKTPFELQSKIRNALISALCSMSFQDEDEFD
EIVSMLIDLLNYTKQVTAKSAILVVNATKKILKRSVDSEDHSRIYLQRNSVEKIVSLISY
SMEVSIGYNERNFIVLDGMNIISDLMLEYIAFNKKQHLGLSTNLIDFQTSTHMMLQNSIQ
TIGSTKVYLPQLQSSHLETKLSNRCYISQLVYFKKNPYLWAEISSQLQGEFAGVSLFNCS
NKKKINAREIAAPVMMEFDMKRNHDLELNKNLFSLYWDKVNFHRFHTVSVNRDEALLITV
TFSRPNLRAFPVLLLVRYSDKPNTSHFNIKEIYTWEGNSVQIFIPAHSIKDGDNPYLAIM
DADYNRQPRNKYLSKMINYTLETQWTKCLYWDYYKQWNSESCFPQKGTLSTNIICSCKHL
GIYTYLRSPVNTSINTEEISQYLLTTKNVIPCTFVLLTVFVYTLLAIYYKFKDRHEEKKN
GVVFLQDNSPNDHQHFAIVVDVGLRSRPKSTAKVYVVLHGEDGVSETRELYFPDKPLFEK
NSRQAFVMSVSESLGPIWKIHIWHNNSGYSPSLYLSHIIVKDLQSGHSYFFLAECWLAMD
EGDGKVERELTSAVHGLEFKKLFYCKLTELLEDLHLWGSLFSRPSYSCFTYTQRITVCLV
LLLGYMFLNSVLIHWEEEQHSFEHGLLDVSPVSMISGFQSTLALYPLAALISLLFRFSEK
KLTSDSGEEKLKVPIQTNSSGDHRNSLSPSDTMFESNLTWQHFQYWAYDAWKKKYERDYF
TPSIHSVNCSKRSKKGSPSPTIQSSSGFEDCSQHLAQKNCSHSSCDTCSEFPTGHRSLFG
NQYKVLPQWCIYLAWCFCAVISIVCAAGTTLIGFSFGPTKCILWAHSVFFSVIFCTFVVQ
PSTIFIIAFFMTWRKKEIIDLFAETVCEATKYFQRETSTFEQISTLHSCPNDLDISTDFE
KILAARKRARYLRLARPPSPSQLKVVKDKIRKKTTTEKTFRECFMHGIMILIFLFITLGK
CSNDDYLLNQAVRNEFTRHAKQSFKNIRTEDDWWNWSFNVLLDGLYWNKMYNITSAKSKT
GPIGGKFFLIGTPIIQKFSLENSSACVTYSFISSIISSYNQANDKPKEPDTENHLEVRDK
MHHRNGKVHCYKGRKSVINLGRSRTEAYSALLRIQSQQWINHSTTALHVLFTLYNPPTNV
FTVVLLQMEFPASGGVITSSLIESFKIYHIATLLDYITMALKLLFLGLILLHSCFQLGVM
IQTGIRNYWQEPWNWIELGIIASSLCYYACITYTFLLTMDMIDRLQKVFFRIFIDCSILA
AWEKWNRSLHGIIFFLMVIKFIKLFRIYKVMAPCLTVLHLSSSSMAFTMISGIIFSLAFS
SLGHVIVLFNSFHFSNMIRSLHMLFMNLLGVGDRRLFSFLHLRTKSVPLPATCVYVVLFL
FITILWTGMIRGILTSIMKNTSKIHRNKQLITLTDVASHAKEKVYSVFGRQRMKSTDTTT
FPRNNFYLEEFEDLIDELLFRLNAISNSLHHSLPAKLHCYTEEAEEVSQLESHSVCCFKP
PQESDLKNDLKIQRQNTAKSQYYTECATVNTDLHRSNTFKNHSAQSLTYENSSSDKDETV
SCMKLKSNTELEGDQTSMHKTKPKKQPVTDTERCRSQVSEELKISSPTTQMKESNFEDLS
TPFCSDQFIENIAMDPEKTDGKNRCTSATDFCKNRKPLKRSHTTVIELLDNSCKLVWNKV
HEGNPEVVRSTIDVRHSEKLHCFSMENTNAIHPQVTYYEGEKGSHMKQKSADTYKYSKSK
LPEGEQNERQQDNELHQAETNRFHQENCDLKDTQSFIKQCWY
NT seq
8049 nt
NT seq
+upstream
nt +downstream
nt
atgggcactttgcaagtgcttttctgcatttatttgagtacccccgccgtattcagcaat
atactccagaacacagtttccattgtcacaaatgggaccttcttttcaactgagacaaat
attattttcaaagctgtgacttccgaaagtggtcctgtgcattttgtttggaattttgga
gacaagtcactacctgagtcaacatataacagtgttatttcaaaaaaatactctatccca
aacagttataatgtaattgtcaatgcttccagtccagttggaaccgttgtttctgaagtc
tacacaatttttatacagaaaaaggtgattcccaaccgacttattgctagaccatctgta
ctgattaactccactgtgacatttgaatgtagaatcaactctgggacaaatataagttat
ttgtggaattttggagatgaaacaattagatttggaaagataactgacacacatgtatat
atgagagaaggggaatatacagtaaatgtgtcgatcttcaataatgttagtgctgctttc
ctaacaaagcagatttttgttgtcagagagctttgtcttcctcctccagtaaaacacatg
ggtccacaaaaaatacagatacgaagatatgaacagctatgtcttggagtcacatttgaa
gctgaaattatgtgtaatatatcacaaggtcttcactatttctggtcttttgttaaatct
aatggaaattctgtaattctaccaaattatataaacgacaggaagcaaaaaattacagtt
ccaggattcttactcgagtatgaaaactatactgctgttgcacgggtccaaattgttggc
aatgtggtatacagtaactacacagttctgctagaagtccttcctagtgacccagtcagt
gtgattgctggtggaacacattttctcatagacaaaagtactgtgacacattttaaactt
gatggaagtgcttcttttgacccagactatcctgaagcctctttgaggtttcattggaag
tgcattccagtaagtttatactcagattcatgttttaatactgcagcccttaaccctctt
cagactgatggttcaataatacattttccaactgctcttcttaatgagaaatttgatcag
tttcttattagcttaactgtgtccaatggtaatcgcagatcaccagttgcccaagctgtc
ttatctataagttcaagaccgaatttcagggatgttcagataatttgcattgaatgtaaa
ggttacactgttaactggaacgagaaattttctgttcaagttgtatgtactgagtgcaga
gaggcagaaatatcatattcttgggaactgtattcaataaatacaacagaagtggagagt
tcagatggaccattctgcagtgttcttgaaatattggggtcatccagtctatttggtaca
cctctaccatcggttgaaatatttactgatccccccattacacaaattatatcaggggat
atttttgatgaacaccggttgacagaagaagcataccttaggcttgacccgtgtccaaaa
actgtaccatctgcacccattcatggtattcatggtctgttagaggaaatttcatctgga
ggtagaccatctagaagcaaaagatcagaatataccactgctttaagaaatataagccat
gaacagtcaggagaacaaacaaactttaatggaacatacagtggttttttaattggtgga
ggagaaggaggggcagatttatttaacctaacagaggttccaacacattcagatcttgag
gtacactgtattggcatccaggaaggtaaaaaaggttcaggtggcaggcctgaagatcca
gaaggtgaaagatatggcagtacaagaccacatgaaaatgaagaccaaaaaggagatgaa
attttaaatccatcaaaggcagctgctgtgtctcctgtcacatccatgttagactggaaa
acacagcaaattagcaaaagcacattcagaggtttcgtaacaacagatctttcgtctcag
gttcttacattcaagcctttctctctgaaacctggcaagatgtatatgcttgatgtctct
cttgcctctaggggaaatgaaataggcaaatcacagctctactttacagttaatgaaatg
gcaccaagaatgacctgccaagtgcaaccaaacgagggaatggaattatacacagttttc
agcatattttgtacttcaggaaaagaggatctttattatgactttagctaccaagttggg
aggagatcagctaggaagaaactgtatgaaggaagagacattcagtattattttaacttg
cctgcaggtgatcaaacagatggatatcaagttactcttttcacacaaatcacaaatatg
tatggatcacaaacaaagccatgtccggtaaatgtaactgtatggcctagctttgggaag
aatacctctactgacttcattgcagaacaactgtatcatcatggcttgaaaaatctttct
gtacttttacttatggaaaatcacatagagataagaaattacattacattattgacagtg
gtactcaataaattatatagtgaagaaactaagactccgtttgaactgcaatcaaaaata
agaaatgcactgatttcagctctttgtagtatgtccttccaggatgaggatgaatttgat
gagatagtgtcaatgttaatagaccttctgaattatacaaagcaggttacagctaagagc
gcaattctcgttgtaaatgctactaaaaaaattcttaaaaggtctgttgactctgaagac
catagcagaatatatctgcaaagaaattcggttgagaaaattgtctccttgatatcatat
tccatggaagtatctatagggtataatgaaaggaacttcattgtgcttgatggcatgaac
atcataagtgatctgatgctggagtacattgcttttaataagaaacaacatcttggccta
agtacaaatctgattgatttccagaccagtacccatatgatgcttcagaacagcatccag
acaattggttcaacaaaagtctacctaccacagctgcagagcagtcacttggaaacaaaa
ctaagtaaccggtgttacattagtcagctggtttatttcaagaagaatccatacctttgg
gcagaaatttcatctcagcttcagggggagtttgctggtgttagtcttttcaactgctcc
aacaaaaagaagataaatgcaagagaaattgcagcaccggtaatgatggaatttgacatg
aaaagaaatcatgatttagagctcaacaaaaacctattttcactttattgggacaaagta
aactttcacagatttcatacagtttcagttaacagagatgaggcattgcttataacagtt
acattttcccgtcctaatttgagagcatttcctgtgttgctacttgtaaggtactctgat
aagcccaacacttctcattttaacataaaagaaatttacacttgggaaggaaattctgtt
caaatatttattcctgctcattccattaaagatggtgataacccctatttggcgataatg
gacgcagactataatagacaaccacgaaataaatatctttcaaagatgatcaattatact
cttgaaacccaatggacaaagtgtttgtactgggattactacaaacagtggaattcagaa
agttgttttcctcaaaaaggaacactgtctacaaacatcatatgcagctgcaaacatctt
ggcatatatacctacctaagaagtcctgtgaacactagcatcaacactgaagagatttca
caatatctgctgaccaccaaaaatgttataccttgtacttttgttttgcttaccgtattt
gtatatacactactggcaatttactacaaatttaaggatcgtcatgaagagaagaagaat
ggtgttgtattccttcaggataactctccaaatgaccatcagcattttgccattgtagtt
gatgtaggtttgcgatccaggccaaaatcaacagccaaggtttatgtagttctacatggt
gaagacggtgtgtctgaaacaagagaactttactttcctgacaaaccattatttgaaaag
aattcacgacaggcattcgttatgagtgtttcagaaagccttgggcccatatggaagatt
catatttggcataacaacagtggctactctccaagtttgtatctgagtcacataattgtc
aaagatttacaaagtggtcacagttattttttccttgcagagtgctggcttgctatggat
gaaggtgatggaaaagtggaaagggagctgacatctgctgtacatggacttgagtttaaa
aagttgttttactgcaagctgacggaacttttagaggatttacatctatggggatcttta
tttagccgtccttcttacagctgcttcacatacactcaacgaataaccgtttgccttgtc
ttacttctgggatacatgtttttgaacagtgttcttattcactgggaagaagaacagcat
tcgtttgaacatggtcttctcgatgtttctccagtttccatgatatcaggatttcaatca
acattagccctttatccacttgcagcattaatctcacttctctttaggtttagtgagaag
aagctaacaagtgattctggtgaagagaagttgaaagtgccaattcagacaaactcttct
ggagatcatcgaaattctttatctccgtcagacacaatgtttgaatccaacttgacttgg
cagcacttccagtactgggcttatgatgcctggaaaaagaaatatgagagggattatttt
acaccaagcattcactcagtaaactgcagtaagaggagtaaaaagggaagcccttctcct
actatccaaagctcaagtggatttgaagactgcagtcaacatctggctcaaaagaattgc
agtcatagttcatgtgacacgtgttcagaattcccaacaggccacagaagcttatttgga
aatcagtataaagtattgcctcaatggtgtatttatttggcctggtgtttctgtgcagtg
attagtattgtgtgtgcagccgggacaacattaattggtttcagttttggtcctacaaaa
tgcatactctgggcgcactctgtgtttttctcggtcatcttttgcacttttgttgttcag
ccttctacgatatttattatagctttctttatgacttggcgtaagaaggaaatcattgac
ttgtttgctgaaacagtttgtgaggccactaagtattttcagagggaaacaagtacattt
gaacagatttctaccttgcattcttgtccaaatgatcttgacatttcaacagactttgaa
aagatacttgctgctcgaaagagggctcgctatttgaggctggcccgtccaccttcccct
tctcaactcaaggtagtcaaggataaaatcagaaagaaaacaactactgagaaaacattc
agggaatgtttcatgcatggaatcatgatcttgatattcctttttataacattggggaaa
tgctcaaatgatgattatttgctgaaccaagcagtaagaaatgaatttacaagacatgct
aaacagtcatttaagaatataagaactgaagatgactggtggaattggagctttaatgtt
ttacttgatggtctgtactggaacaaaatgtacaatattacatctgcaaagtctaaaact
ggtcctattggaggcaaattctttctgattggaactcctatcattcagaagtttagtctt
gaaaatagttctgcatgtgtgacctattcctttatttcatctataatttcctcatacaat
caagcaaatgataaacctaaagaaccagacactgaaaaccacctggaagtcagagataaa
atgcatcatcgcaatggcaaggttcattgttacaaaggcagaaaatctgttattaatctt
ggcagatcaagaactgaagcctattcagctttgctacgtatacagagtcagcagtggata
aaccacagcacaacagcgcttcatgtactttttactctatataatcctccaactaatgtg
tttactgtggtattattgcaaatggagtttcctgcctctggtggtgttattacatcatca
ttaattgaatctttcaagatataccatatcgcaactcttttggattatatcaccatggca
ttgaagttattgtttctgggacttattcttcttcattcctgtttccaactgggtgtaatg
attcagactggcattaggaactactggcaggaaccatggaactggattgagcttggcata
atagcaagcagtctctgttactatgcatgcattacatacacatttttacttacaatggat
atgattgaccgtcttcagaaagtattctttagaatttttatagattgcagcatccttgct
gcatgggaaaagtggaaccgctctttgcatgggatcatttttttcttaatggtaataaag
ttcatcaaattatttcgcatttacaaagtgatggctccctgtttgacggttcttcacctt
tcttcatccagtatggcttttactatgatttctggaatcattttttcgcttgccttttca
tcacttggtcatgttattgtcctctttaattcctttcattttagcaacatgatcaggtca
ttacatatgctttttatgaaccttttgggagttggcgacagaagacttttttcattttta
cacctcagaactaaatcagttccgttacctgcaacatgtgtttatgtagtactgtttctt
tttataacaattttatggactggcatgataagaggaatactcacgtcaataatgaaaaac
accagtaaaatacatagaaataagcaactgatcacactaacagatgtcgcttctcatgca
aaagagaaagtatattcagtgtttggacgccaaagaatgaaatcaacggatactacaaca
tttccccgcaataatttttacttggaagagtttgaggaccttatagatgaactgttattt
cgactaaatgcaatatcaaatagccttcaccattccctccctgcaaagttacactgttac
acagaagaagctgaagaagttagtcagctggaaagtcattcggtttgctgctttaaacca
ccacaggagagtgatttgaaaaatgacctaaaaattcagagacaaaacacagcgaagagt
caatactatacagaatgtgccactgtgaatactgatctgcacagatccaacacatttaag
aatcactcagctcaatcccttacttatgaaaattcttccagtgataaagatgaaactgtg
tcttgtatgaagttaaaaagtaacacagaacttgaaggtgatcagacaagcatgcataag
actaaacctaaaaagcaacctgtaactgacactgaacgctgcagatcacaagtatctgaa
gagcttaagatctcttctccaacaacgcaaatgaaagaatctaatttcgaagatttatca
actccattttgcagtgaccagtttatagaaaatatagctatggatcctgagaaaacagat
ggtaaaaatcgttgcacttctgctaccgatttctgtaaaaatcgtaaaccactaaagcgt
tctcatacgactgtgattgaacttttagacaatagttgcaaattagtatggaataaagtg
catgaaggtaatccagaagtagtcaggagcacaatagatgtaagacattcagaaaagctg
cattgtttctcaatggaaaacacaaatgccattcacccccaagttacctactatgaagga
gagaaaggaagccatatgaaacaaaaaagtgctgacacctataaatacagtaaaagtaaa
cttcccgaaggagaacaaaatgaaagacaacaagataatgaactgcaccaggctgaaaca
aacagatttcatcaggaaaactgtgacttaaaagatactcaaagttttattaagcagtgt
tggtactga
DBGET
integrated database retrieval system
