Xenopus tropicalis (tropical clawed frog): 100493153
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Entry
100493153 CDS
T01011
Symbol
col4a6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04382
Cornified envelope formation
xtr04510
Focal adhesion
xtr04512
ECM-receptor interaction
xtr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100493153 (col4a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100493153 (col4a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
100493153 (col4a6)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
100493153 (col4a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
xtr04147
]
100493153 (col4a6)
00536 Glycosaminoglycan binding proteins [BR:
xtr00536
]
100493153 (col4a6)
Exosome [BR:
xtr04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
100493153 (col4a6)
Glycosaminoglycan binding proteins [BR:
xtr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100493153 (col4a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
100493153
NCBI-ProteinID:
XP_012824447
Xenbase:
XB-GENE-6034568
UniProt:
A0A803JRW2
LinkDB
All DBs
Position
8:complement(50728479..50870050)
Genome browser
AA seq
1709 aa
AA seq
DB search
MVTRLCLLVAAACLAAELVLVQGGGKKFYQGPCAGRDCSGGCKCFPEKGARGRPGQLGPQ
GPMGPPGFSGPEGVAGQKGERGDYGFQGEAGPKGDLGHRGVTGFDGNDGTPGHVGQAGHR
GLPGLDGCNGTIGDSGFPGSNGFPGQSGLPGPIGPKGQKGEPSFISSDIRGLKGEDGIPG
QEGLPGPRGPPGPEGMSGTAGFPGVPGPPGLPGMPGPTGNRGVGYYGENGDKGDVGPPGP
PGPRASTGPVEFTESAKGIQGDKGDRGLPGFRGEQGFPGLEGFGFSGEKGEKGILGLPGP
RGFPGLDGSNGYPGRKGQPGLPGFDGLHGFTGMKGEQGNIGLPGTPIYIDEDGLAITGPP
GDPGPSGFLGMPGDDGISGPPGPPGQPGLPSFVRGNPGPSGFPGVQGLKGEQGNPGKPGF
GPPGNTGRVGQPGPPGPPGEDGPSGEIAGHQTALGEPGLPGVPGNRGPPGQIGPKGYKGA
DGDCACEGGDLSKGSPGSPGLPGQRGSPGFSGLNGIPGDPGRRGSDGLPGPPGSPGLPWF
PGPKGEKGDPVYSTGKGPRGDPGSVGPRGAFGAVGKPGRYGYPGLPGLKGAPGTGGSGEK
GYPGLLGPKGSRGETGPPGIGYPGSPGPRGLPGDPGQAGLPGQPGLAGPPGDCCCGANVG
NGDLVTEGGTTLPCVIAGEPGPPGIRGTPGFPGRKGNMGFPGVPGQQGFDGAKGQPGNPG
FGGIPGPPGFPGPRGEEGAPGFNGLPGSEGLPGKFGIPGSPGLKGLRGEVLGATPGAPGE
PGLPGINGDKGLPGDAGLSGQRGFDGRPGLMGAKGERGNSGFPGSPGPKGQPGFGGSMGI
KGKQGPPGDIGYPGSPGCQGFPGNKGVPGDRGIPGIAGMKGRPGAPGDAGRPGELGLPGL
PGTGGREGLPGFQGLKGEKGFPGVRGFAGMPGIPGLPGVSGYKGICGSPGQDGQKGNDGI
KGVKGLPGDRGPPGAVMPPPPGLLSKGAQGEQGPSGPPGFTGPRGDKGFPGLPGIPGNPG
FPGNPGRDKGFPGDPGFPGAFGRPGFPGPKGEPGIIGFPGMPGPNGADGIPGVSGFPGSP
GLPGPKGERGETLGQPGRPGVKGETGIPGISGLRGFDGMPGDVGSIGISGNPGPKGPPGE
FGRIGQPGNPGQQGYRGNPGLVGSSGLPGSPGSPGYPGAPGLKGFPGSQGIGGLNGLAGS
KGSPGTPGLSEAGRPGTPGFPGPKGERGSPSTISGQPGFPGSKGFPGERGLPGAVGLPGL
PGPPGFSFPSAIPGRPGDPGFPGRDGEAGLPGLPGPRGPPGPGSNQGDTGDSGYPGIPGR
PGIKGEPGIPGNPGSPGAPGLKGLRGDPGFIGSPGKEGSVGDPGFPGLKGERGNPGLPGP
QGRPGPPPSIEDYQIPIGLPGLPGINGFDGVLGEIGSPGPNGPPGAKGFPGRSGQMGRNG
PPGAPGPIGDPGEIGIPGTSGLEGSPGKQGAVGLPGMPGRSVGVGYTLVKHSQSEQIPPC
PLGMARLWDGYSLLFVEGQEKAHNQDLGLAGSCLPRFSTMPFIYCNINEVCYYASRNDKS
YWLSTTAPIPMMPVGSTEIKNYISRCSVCEASSQAVAVHSQDNTIPQCPDGWRSLWIGYS
FLMHTAAGAEGGGQSLVSPGSCLEDFRATPFIECSGARGTCHYFANKYSFWLTTVEETRQ
FARPPTSETLKSGQLRTRVSRCQVCMKNL
NT seq
5130 nt
NT seq
+upstream
nt +downstream
nt
atggtgacacgactttgccttctggtcgctgccgcctgcttagctgcagaactggtgctg
gtgcaagggggaggaaaaaagttctatcaggggccatgtgccggacgagattgtagtggg
ggctgcaaatgttttccagaaaaaggagctcggggtcgaccagggcaacttgggcctcag
ggtccaatgggtccaccaggattttcaggacctgaaggagtagcagggcaaaaaggtgaa
agaggagattatggctttcaaggagaagctggacctaaaggagacctgggtcatagggga
gttactggctttgatggaaatgatggaacaccgggtcatgttggccaggcaggccataga
gggttacctggacttgatggctgcaatggcaccataggcgactcaggctttcctggtagt
aatggcttccctgggcaatctggattaccaggtcctattggtcctaaaggtcagaaaggg
gaaccttcttttatttcaagtgatataagagggctgaagggagaagatggaatacctgga
caagaaggtttgcctggaccacgtgggcctcctggaccagagggtatgtctggcacagcg
ggatttcctggtgtgccgggtcctccgggtctacctggaatgccaggtccaacaggaaac
aggggtgttggttattatggagagaatggagataagggagacgttgggcctccaggaccc
ccggggccgagagcatctactgggccagtggagtttactgagtcagcaaaaggaattcaa
ggagacaagggtgatagaggtcttccagggttccgaggggagcagggatttcctggcctt
gaggggtttggattcagtggagagaagggagaaaagggaatacttggccttcctggccca
agaggttttccaggtctggatggatccaatggatatccaggcaggaagggacagccgggg
ctacctggttttgatggacttcatgggttcacaggaatgaagggtgaacaaggaaacatt
ggcttacctgggacaccaatatacatagatgaggatggtttagccattacaggcccacca
ggagatccaggtccttctggatttctcggaatgccaggagatgacggtatcagtggccca
cctggccctcccggtcaacctggtttaccatcgtttgttagaggcaatcctgggccatct
ggttttccaggtgttcaaggtcttaaaggggaacaaggaaacccaggaaaaccaggtttt
gggccacctggaaatacaggaagagttggccaacccggaccacctggtccccctggagaa
gatggaccttctggagaaattgctggacatcaaacagctttaggagaaccaggtttacca
ggagtcccaggaaatagaggtcccccaggacaaatcggacctaagggatataaaggagct
gacggagactgtgcttgtgaaggaggcgatcttagcaagggtagtcctggatcaccaggg
ctacctggtcaaagaggaagtcctggtttttctggcctaaatggaataccaggtgatcct
ggaagaagaggctctgatggactacctggtccaccaggttctcctggtctaccctggttt
cctggaccaaaaggagaaaaaggagatcctgtgtattcaaccggtaaaggtccacgtggt
gaccctggttctgtaggtcccaggggagcatttggtgctgtgggaaaacctggaagatat
ggttacccaggattacctggtcttaaaggagctcctggcactggtggttctggtgagaag
ggatacccaggtttgcttgggccaaaggggagtcgtggggaaacaggacctccaggtatt
ggttacccaggttctcctggacctcgtgggcttcctggtgacccaggacaagcaggatta
ccaggacaaccaggtctggcagggccaccaggtgactgctgctgcggggccaatgttggt
aatggagacttagtcacagagggaggaacaacattaccctgtgttattgctggagaacca
ggcccaccaggaatccgtggcacaccaggatttccaggtcgtaaaggtaatatgggattc
ccaggagttccaggacaacagggctttgatggtgctaaaggacaaccaggcaatccaggt
tttggtggaattccagggcctcctggatttcctggaccccgtggagaagaaggtgctcca
gggttcaatggattgccaggtagtgaaggacttcctggaaagttcgggatcccagggtcc
cctggtttaaaaggattgcgaggagaagtattgggagcaacacctggagctcctggtgag
ccaggcctacctggaatcaatggagacaaaggcttaccaggagatgctggtttatcagga
cagagaggttttgatggaaggcctggactgatgggtgctaaaggagaacggggtaactct
ggtttccctggcagcccaggtcccaaaggtcaacctggctttggagggtcaatggggatt
aaaggaaaacagggtcctcctggagatattggatacccaggctcaccaggctgccaaggt
tttcctggaaataaaggtgtacctggagacagaggcattccgggcatagctgggatgaag
ggacgcccaggagctccaggggatgcaggacgtcctggtgaattaggtctccctgggcta
cctggaacaggtggccgtgaaggtcttccagggttccaaggacttaaaggagagaaaggc
tttcctggtgtgaggggatttgctggaatgcctggtattccaggacttcctggagtcagt
ggatataaaggaatttgtggctcacctggacaagatggacaaaaaggaaatgatggcatt
aagggagtaaaaggtttacctggcgatcgtggtccaccaggtgctgtcatgccaccacca
cccggccttctttctaaaggtgctcaaggagaacaaggaccaagtggccctcctggattt
acaggaccaagaggtgataaaggctttcctggacttccaggaatacctgggaaccctggt
tttccaggcaacccaggcagagataaaggttttccaggtgacccaggatttcccggagca
tttggaagaccaggatttcctggtccaaaaggagaacctggaataattggatttcctgga
atgcctggaccaaatggtgctgacggtatcccgggagtttctggctttcctggcagtcct
ggcctaccaggacccaagggagaaagaggagagactttaggacaacctggacgtccagga
gttaaaggagagactggcataccaggaatttcaggtctaagaggttttgatggcatgcct
ggagatgttgggtcaataggaatatctggaaatcctggaccaaagggtcctccaggagag
tttggacggataggacaacctggaaatccggggcaacagggatatagaggaaaccctgga
ttagtgggtagttctggattaccaggttctccaggatccccaggatacccaggggcacca
ggtcttaaaggttttcctggatctcaaggtattggtggcttaaatggcttggctggaagt
aaagggtcccctggaacaccagggcttagtgaggctggacgaccaggaacccctggattt
ccagggccaaaaggtgaaagaggttctcccagcacaatatcggggcaaccaggatttcct
ggatctaaaggatttcctggagaaagaggtcttcctggtgctgttggcttacctggtctt
cctggaccaccaggcttctcattcccctctgccatcccagggagacctggtgaccctggc
tttcctggacgagatggggaagcaggacttcctggcctgccagggccacgtggcccacct
ggcccaggatctaatcaaggggatacaggggactcaggatacccaggcattcctggcagg
cctggcataaagggtgaacctggaattccaggaaacccaggaagccctggagctcctgga
ctgaaaggtctaagaggtgatccaggtttcattggtagcccaggcaaggaaggttctgta
ggagatcctggctttccaggactaaagggagaaaggggcaacccaggacttcctggtccc
caaggacgacctggccctcccccatcgatagaggattaccagattcctattggattacca
ggtctgcctggaattaatggttttgatggtgttcttggggaaatcggatcaccaggacca
aatggaccaccaggagcaaaaggatttccaggcagatctgggcaaatgggaagaaatggg
ccacctggtgctcctggtcctattggtgatcctggcgaaattggtattcctggtacttct
ggacttgaaggttctcctggtaagcagggtgcagttggcttacccggaatgcccggacgg
agtgtgggtgttggatacacattagtaaagcacagccagtctgaacagattcctccatgc
ccgcttggaatggccagattgtgggatggctatagcttgctgttcgtggaaggacaagaa
aaggctcacaatcaagacttgggtcttgctggttcctgtttgccccgattcagcaccatg
ccttttatttactgcaacattaatgaggtctgctactatgctagcaggaatgacaaatct
tactggctctctaccacggcccctatccccatgatgcctgtgggcagcactgagattaaa
aactacattagtcgctgctcagtgtgtgaagcttcttcccaggctgttgctgttcatagc
caggataacacaatcccacaatgccctgatggatggaggagcctctggattggatactct
ttcctcatgcacacagctgctggtgctgaaggtggcggtcagtccttagtatctccaggt
tcttgccttgaagattttcgggctaccccatttattgaatgcagcggagcaagaggaacc
tgccattactttgccaacaagtacagcttctggttgaccactgtggaagaaacacggcag
tttgctagaccgcccacttctgaaaccttgaaatctgggcagttgagaacacgtgtgagc
cgctgccaggtgtgcatgaagaacttgtag
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integrated database retrieval system
