Xenopus tropicalis (tropical clawed frog): 100493153
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Entry
100493153 CDS
T01011
Symbol
col4a6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04510
Focal adhesion
xtr04512
ECM-receptor interaction
xtr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100493153 (col4a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100493153 (col4a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
100493153 (col4a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
xtr04147
]
100493153 (col4a6)
00536 Glycosaminoglycan binding proteins [BR:
xtr00536
]
100493153 (col4a6)
Exosome [BR:
xtr04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
100493153 (col4a6)
Glycosaminoglycan binding proteins [BR:
xtr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100493153 (col4a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
100493153
NCBI-ProteinID:
XP_012824447
Xenbase:
XB-GENE-6034568
UniProt:
A0A803JRW2
LinkDB
All DBs
Position
8:complement(50728479..50870050)
Genome browser
AA seq
1709 aa
AA seq
DB search
MVTRLCLLVAAACLAAELVLVQGGGKKFYQGPCAGRDCSGGCKCFPEKGARGRPGQLGPQ
GPMGPPGFSGPEGVAGQKGERGDYGFQGEAGPKGDLGHRGVTGFDGNDGTPGHVGQAGHR
GLPGLDGCNGTIGDSGFPGSNGFPGQSGLPGPIGPKGQKGEPSFISSDIRGLKGEDGIPG
QEGLPGPRGPPGPEGMSGTAGFPGVPGPPGLPGMPGPTGNRGVGYYGENGDKGDVGPPGP
PGPRASTGPVEFTESAKGIQGDKGDRGLPGFRGEQGFPGLEGFGFSGEKGEKGILGLPGP
RGFPGLDGSNGYPGRKGQPGLPGFDGLHGFTGMKGEQGNIGLPGTPIYIDEDGLAITGPP
GDPGPSGFLGMPGDDGISGPPGPPGQPGLPSFVRGNPGPSGFPGVQGLKGEQGNPGKPGF
GPPGNTGRVGQPGPPGPPGEDGPSGEIAGHQTALGEPGLPGVPGNRGPPGQIGPKGYKGA
DGDCACEGGDLSKGSPGSPGLPGQRGSPGFSGLNGIPGDPGRRGSDGLPGPPGSPGLPWF
PGPKGEKGDPVYSTGKGPRGDPGSVGPRGAFGAVGKPGRYGYPGLPGLKGAPGTGGSGEK
GYPGLLGPKGSRGETGPPGIGYPGSPGPRGLPGDPGQAGLPGQPGLAGPPGDCCCGANVG
NGDLVTEGGTTLPCVIAGEPGPPGIRGTPGFPGRKGNMGFPGVPGQQGFDGAKGQPGNPG
FGGIPGPPGFPGPRGEEGAPGFNGLPGSEGLPGKFGIPGSPGLKGLRGEVLGATPGAPGE
PGLPGINGDKGLPGDAGLSGQRGFDGRPGLMGAKGERGNSGFPGSPGPKGQPGFGGSMGI
KGKQGPPGDIGYPGSPGCQGFPGNKGVPGDRGIPGIAGMKGRPGAPGDAGRPGELGLPGL
PGTGGREGLPGFQGLKGEKGFPGVRGFAGMPGIPGLPGVSGYKGICGSPGQDGQKGNDGI
KGVKGLPGDRGPPGAVMPPPPGLLSKGAQGEQGPSGPPGFTGPRGDKGFPGLPGIPGNPG
FPGNPGRDKGFPGDPGFPGAFGRPGFPGPKGEPGIIGFPGMPGPNGADGIPGVSGFPGSP
GLPGPKGERGETLGQPGRPGVKGETGIPGISGLRGFDGMPGDVGSIGISGNPGPKGPPGE
FGRIGQPGNPGQQGYRGNPGLVGSSGLPGSPGSPGYPGAPGLKGFPGSQGIGGLNGLAGS
KGSPGTPGLSEAGRPGTPGFPGPKGERGSPSTISGQPGFPGSKGFPGERGLPGAVGLPGL
PGPPGFSFPSAIPGRPGDPGFPGRDGEAGLPGLPGPRGPPGPGSNQGDTGDSGYPGIPGR
PGIKGEPGIPGNPGSPGAPGLKGLRGDPGFIGSPGKEGSVGDPGFPGLKGERGNPGLPGP
QGRPGPPPSIEDYQIPIGLPGLPGINGFDGVLGEIGSPGPNGPPGAKGFPGRSGQMGRNG
PPGAPGPIGDPGEIGIPGTSGLEGSPGKQGAVGLPGMPGRSVGVGYTLVKHSQSEQIPPC
PLGMARLWDGYSLLFVEGQEKAHNQDLGLAGSCLPRFSTMPFIYCNINEVCYYASRNDKS
YWLSTTAPIPMMPVGSTEIKNYISRCSVCEASSQAVAVHSQDNTIPQCPDGWRSLWIGYS
FLMHTAAGAEGGGQSLVSPGSCLEDFRATPFIECSGARGTCHYFANKYSFWLTTVEETRQ
FARPPTSETLKSGQLRTRVSRCQVCMKNL
NT seq
5130 nt
NT seq
+upstream
nt +downstream
nt
atggtgacacgactttgccttctggtcgctgccgcctgcttagctgcagaactggtgctg
gtgcaagggggaggaaaaaagttctatcaggggccatgtgccggacgagattgtagtggg
ggctgcaaatgttttccagaaaaaggagctcggggtcgaccagggcaacttgggcctcag
ggtccaatgggtccaccaggattttcaggacctgaaggagtagcagggcaaaaaggtgaa
agaggagattatggctttcaaggagaagctggacctaaaggagacctgggtcatagggga
gttactggctttgatggaaatgatggaacaccgggtcatgttggccaggcaggccataga
gggttacctggacttgatggctgcaatggcaccataggcgactcaggctttcctggtagt
aatggcttccctgggcaatctggattaccaggtcctattggtcctaaaggtcagaaaggg
gaaccttcttttatttcaagtgatataagagggctgaagggagaagatggaatacctgga
caagaaggtttgcctggaccacgtgggcctcctggaccagagggtatgtctggcacagcg
ggatttcctggtgtgccgggtcctccgggtctacctggaatgccaggtccaacaggaaac
aggggtgttggttattatggagagaatggagataagggagacgttgggcctccaggaccc
ccggggccgagagcatctactgggccagtggagtttactgagtcagcaaaaggaattcaa
ggagacaagggtgatagaggtcttccagggttccgaggggagcagggatttcctggcctt
gaggggtttggattcagtggagagaagggagaaaagggaatacttggccttcctggccca
agaggttttccaggtctggatggatccaatggatatccaggcaggaagggacagccgggg
ctacctggttttgatggacttcatgggttcacaggaatgaagggtgaacaaggaaacatt
ggcttacctgggacaccaatatacatagatgaggatggtttagccattacaggcccacca
ggagatccaggtccttctggatttctcggaatgccaggagatgacggtatcagtggccca
cctggccctcccggtcaacctggtttaccatcgtttgttagaggcaatcctgggccatct
ggttttccaggtgttcaaggtcttaaaggggaacaaggaaacccaggaaaaccaggtttt
gggccacctggaaatacaggaagagttggccaacccggaccacctggtccccctggagaa
gatggaccttctggagaaattgctggacatcaaacagctttaggagaaccaggtttacca
ggagtcccaggaaatagaggtcccccaggacaaatcggacctaagggatataaaggagct
gacggagactgtgcttgtgaaggaggcgatcttagcaagggtagtcctggatcaccaggg
ctacctggtcaaagaggaagtcctggtttttctggcctaaatggaataccaggtgatcct
ggaagaagaggctctgatggactacctggtccaccaggttctcctggtctaccctggttt
cctggaccaaaaggagaaaaaggagatcctgtgtattcaaccggtaaaggtccacgtggt
gaccctggttctgtaggtcccaggggagcatttggtgctgtgggaaaacctggaagatat
ggttacccaggattacctggtcttaaaggagctcctggcactggtggttctggtgagaag
ggatacccaggtttgcttgggccaaaggggagtcgtggggaaacaggacctccaggtatt
ggttacccaggttctcctggacctcgtgggcttcctggtgacccaggacaagcaggatta
ccaggacaaccaggtctggcagggccaccaggtgactgctgctgcggggccaatgttggt
aatggagacttagtcacagagggaggaacaacattaccctgtgttattgctggagaacca
ggcccaccaggaatccgtggcacaccaggatttccaggtcgtaaaggtaatatgggattc
ccaggagttccaggacaacagggctttgatggtgctaaaggacaaccaggcaatccaggt
tttggtggaattccagggcctcctggatttcctggaccccgtggagaagaaggtgctcca
gggttcaatggattgccaggtagtgaaggacttcctggaaagttcgggatcccagggtcc
cctggtttaaaaggattgcgaggagaagtattgggagcaacacctggagctcctggtgag
ccaggcctacctggaatcaatggagacaaaggcttaccaggagatgctggtttatcagga
cagagaggttttgatggaaggcctggactgatgggtgctaaaggagaacggggtaactct
ggtttccctggcagcccaggtcccaaaggtcaacctggctttggagggtcaatggggatt
aaaggaaaacagggtcctcctggagatattggatacccaggctcaccaggctgccaaggt
tttcctggaaataaaggtgtacctggagacagaggcattccgggcatagctgggatgaag
ggacgcccaggagctccaggggatgcaggacgtcctggtgaattaggtctccctgggcta
cctggaacaggtggccgtgaaggtcttccagggttccaaggacttaaaggagagaaaggc
tttcctggtgtgaggggatttgctggaatgcctggtattccaggacttcctggagtcagt
ggatataaaggaatttgtggctcacctggacaagatggacaaaaaggaaatgatggcatt
aagggagtaaaaggtttacctggcgatcgtggtccaccaggtgctgtcatgccaccacca
cccggccttctttctaaaggtgctcaaggagaacaaggaccaagtggccctcctggattt
acaggaccaagaggtgataaaggctttcctggacttccaggaatacctgggaaccctggt
tttccaggcaacccaggcagagataaaggttttccaggtgacccaggatttcccggagca
tttggaagaccaggatttcctggtccaaaaggagaacctggaataattggatttcctgga
atgcctggaccaaatggtgctgacggtatcccgggagtttctggctttcctggcagtcct
ggcctaccaggacccaagggagaaagaggagagactttaggacaacctggacgtccagga
gttaaaggagagactggcataccaggaatttcaggtctaagaggttttgatggcatgcct
ggagatgttgggtcaataggaatatctggaaatcctggaccaaagggtcctccaggagag
tttggacggataggacaacctggaaatccggggcaacagggatatagaggaaaccctgga
ttagtgggtagttctggattaccaggttctccaggatccccaggatacccaggggcacca
ggtcttaaaggttttcctggatctcaaggtattggtggcttaaatggcttggctggaagt
aaagggtcccctggaacaccagggcttagtgaggctggacgaccaggaacccctggattt
ccagggccaaaaggtgaaagaggttctcccagcacaatatcggggcaaccaggatttcct
ggatctaaaggatttcctggagaaagaggtcttcctggtgctgttggcttacctggtctt
cctggaccaccaggcttctcattcccctctgccatcccagggagacctggtgaccctggc
tttcctggacgagatggggaagcaggacttcctggcctgccagggccacgtggcccacct
ggcccaggatctaatcaaggggatacaggggactcaggatacccaggcattcctggcagg
cctggcataaagggtgaacctggaattccaggaaacccaggaagccctggagctcctgga
ctgaaaggtctaagaggtgatccaggtttcattggtagcccaggcaaggaaggttctgta
ggagatcctggctttccaggactaaagggagaaaggggcaacccaggacttcctggtccc
caaggacgacctggccctcccccatcgatagaggattaccagattcctattggattacca
ggtctgcctggaattaatggttttgatggtgttcttggggaaatcggatcaccaggacca
aatggaccaccaggagcaaaaggatttccaggcagatctgggcaaatgggaagaaatggg
ccacctggtgctcctggtcctattggtgatcctggcgaaattggtattcctggtacttct
ggacttgaaggttctcctggtaagcagggtgcagttggcttacccggaatgcccggacgg
agtgtgggtgttggatacacattagtaaagcacagccagtctgaacagattcctccatgc
ccgcttggaatggccagattgtgggatggctatagcttgctgttcgtggaaggacaagaa
aaggctcacaatcaagacttgggtcttgctggttcctgtttgccccgattcagcaccatg
ccttttatttactgcaacattaatgaggtctgctactatgctagcaggaatgacaaatct
tactggctctctaccacggcccctatccccatgatgcctgtgggcagcactgagattaaa
aactacattagtcgctgctcagtgtgtgaagcttcttcccaggctgttgctgttcatagc
caggataacacaatcccacaatgccctgatggatggaggagcctctggattggatactct
ttcctcatgcacacagctgctggtgctgaaggtggcggtcagtccttagtatctccaggt
tcttgccttgaagattttcgggctaccccatttattgaatgcagcggagcaagaggaacc
tgccattactttgccaacaagtacagcttctggttgaccactgtggaagaaacacggcag
tttgctagaccgcccacttctgaaaccttgaaatctgggcagttgagaacacgtgtgagc
cgctgccaggtgtgcatgaagaacttgtag
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integrated database retrieval system
