Xenopus tropicalis (tropical clawed frog): 100493389
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Entry
100493389 CDS
T01011
Symbol
tarbp1
Name
(RefSeq) probable methyltransferase TARBP1 isoform X2
KO
K15333
tRNA guanosine-2'-O-methyltransferase [EC:
2.1.1.34
]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
xtr03016
]
100493389 (tarbp1)
03036 Chromosome and associated proteins [BR:
xtr03036
]
100493389 (tarbp1)
Enzymes [BR:
xtr01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.34 tRNA (guanosine18-2'-O)-methyltransferase
100493389 (tarbp1)
Transfer RNA biogenesis [BR:
xtr03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
100493389 (tarbp1)
Chromosome and associated proteins [BR:
xtr03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
100493389 (tarbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SpoU_methylase
TARBP1
Motif
Other DBs
NCBI-GeneID:
100493389
NCBI-ProteinID:
XP_002935875
Xenbase:
XB-GENE-987523
UniProt:
F6ULL7
LinkDB
All DBs
Position
5:complement(56540215..56623810)
Genome browser
AA seq
1626 aa
AA seq
DB search
MELMLVEALLSHCKDHATLVTELGSWNPTTDKVPTAESLEFLRIILEKLAMRKEKADAEK
LGQAVTTLALNNCLPLLAILRDGILQPRNVTRVARTVCGVLHYCAEIAGNKVAVPVCLAA
VRVLGICGNESQKEGTAGADHLESGVVKVQGECTSLPRHKEMTVEESIEVLGAVVPILQK
NSVSGCSNELDQIVNATVYALKEGTDETANLICGRLLPSLGSDRRSLNLLWDLLMVNNDK
IKGDDGICLSRRLLVLSTLSDHLFVTEAKDRPLKSWCCSSFWTLVQGCLCSPDSLTRKRA
VYLLKRAIDWCQETGEEMACSIDCCRDGDPALFFWSTWKNEAIVLFWENYLLIVETLEGN
QIHVIKPVLPKLNMILESSVSENKDSWLFHPSWHLCIYKRMFESENKTLAKEGVLHFLDM
YNSKSLPESPSCSEFIIGPLMDAMSESSMYSRSSDQLIGDCPILATKFQKFLAKFVSSLH
QGNRGLFLLKFIKKMTSRHWCAIPILFMAKALADIPEKKIWGVDGLLLLREVLQCTMTTH
QVLLRGAAQCFFLQAAIKLTDAEKVTLSDVSSFLISLRADESLDRGSKLWKEVCIWFKEN
DAIFKKDSVYEFTGSQQISSLSMYTKYLVEDYLTVPASKGEDELMPDWYESRLVATMVLL
AADVDSSKVDIALSETADLNFMLTPLLTCLSKLSTNAYMPILKTDKILQLLLKLLQTCSS
KSAQTKTDGLLTVIWNVITTTATNIFEFIVRRLSGELKTIADLDRCDLYLAVLSEFVNLS
LKFGWKKSFSIWKFIYYLTTASAETLQQLSKKDENFGEQIQKVVSMACLASVCGIASYSC
QFQEDSYNYVSVLCRYLSSMQLNSSLSKPIACDGRLLEETTSQGWGKIVARYLRDQWVCL
HFVLRKHEYSFSTSDIKNSEFAPLIFSAPTSSLQSALDVLTVVPSTEALPVFHCMKLLVP
KVIHSSELLAVECINTAWKIVLSSCNTQLVFWPTLQAFVEFVFSNEVLSGAAYTKGQLYF
RIKEIIQETSDMSISKTGVFNVLVSHCYQSWTDYSKKPSIKDDDLLHAKCYMEILTEACV
FGTVFRRDQRLIQDTHAFIESLGKDCAANIAVTSMNRDEHQVRICATAFFSCLDESNPLH
KEFLQDLVIHLLDKDILVSKTKTRYYGNSLHHRLKNRLWQTMLILIPKLDQDFLSGIIDR
IFQAGFSNNQASVKYLIEWAIILILHTHPIFLSKFWDCFSSTEEKLKTSICTFLSVLPHF
DVVIANIPDKGASLKRALVTVLQWCFNHNFSVRLYALIALKKLWAMCKQQCIQEFDELAL
VIESSLDQVENIQGTGNARKNWLRIQNHFFFSTFHPLQDYSIETIFYTLPSLSELIEDEW
ISPHKFSSYTSNLWQSSLPLNNPRPMNVDLLSSDWLQKDTAGSDLGDNETEWTDIQKKII
PWKNSIPDIDLEMAVQNRAAKLGKSSGSLIVVASLIDKPTNLGGLCRTCEIFGASALVVD
SLHHVNDKQFQYLSVSAEQWLPLIEVKPTQLLEYLQLKKNEGYTIIGVEQTAKSFDLTDY
CFPEKSLLLLGNEREGIPANLIQHLDVCVEIPQQGIIRSLNVHVSGAVLIWEYTRQQIMK
QKDGGK
NT seq
4881 nt
NT seq
+upstream
nt +downstream
nt
atggagttaatgcttgtggaagcgctgctttctcattgtaaagaccatgccaccctcgtt
actgaactcggctcatggaatccaactacagacaaggtccctacggccgagagcctggag
tttctccgtattatattggaaaaactggctatgaggaaggagaaggcagacgcagagaag
ctcggtcaagctgtaactacgctggctcttaacaattgcttgccactgctcgccatcctg
cgggatggaatcctacagcctcgtaatgttacacgagttgcaaggacagtgtgtggtgta
ttacattattgtgcagaaattgcaggaaataaagttgcagtcccggtttgtctggccgcc
gtcagggtcctaggaatttgtgggaatgaatcgcagaaggaaggaaccgcaggggctgat
catttggagagtggcgtagtaaaagtacaaggggaatgcacatcacttcctaggcataaa
gaaatgactgtggaagaatctatagaggttctgggagctgtggtaccgatactgcagaag
aacagtgtctcagggtgcagtaatgaattagatcaaatagtaaacgcaacagtgtatgca
cttaaagaaggaacagatgaaacggcaaacttaatatgtggaagattactacccagcctt
gggtcagacaggagaagtttaaacttgctttgggacttacttatggtgaataatgacaaa
atcaaaggagatgatggcatttgcttaagtcgcaggttgttggtattaagcaccttatca
gatcatcttttcgttactgaggctaaagacagaccccttaaatcttggtgctgcagtagc
ttttggacattggtgcagggctgcttgtgtagtcctgacagcctgacaagaaaaagagct
gtgtacctgttaaaaagagcaatcgactggtgtcaggagacaggggaggaaatggcatgt
agcattgattgctgtagagatggagatcctgcattgttcttttggtccacctggaaaaat
gaagcaattgtgctgttttgggaaaattatttgttaattgtggaaacactagaaggaaat
cagatacatgttatcaaaccagttttgccaaaattaaatatgatacttgaatcatcagtt
tcagaaaacaaagattcttggctgtttcacccctcttggcatctttgcatttataagcgt
atgtttgagagtgagaacaaaacattggcaaaggaaggagttctccacttcttagatatg
tataattctaaatccctacctgagtcaccatcatgctctgagtttattattggacccctt
atggatgctatgtcagaaagctctatgtacagcaggtcttctgaccagttaattggtgac
tgccctatcctggcaacaaagtttcagaagtttttggctaaatttgtgtcctcacttcat
caaggaaacagaggactgttcctgctgaagtttatcaagaagatgactagtaggcactgg
tgtgctattcccatactgttcatggctaaggcactggctgatattccagaaaaaaaaata
tggggtgtggatggacttttattgctgagggaggtgctgcagtgtactatgactacacat
caagttctgcttcgtggagctgcacaatgtttttttcttcaagctgcaattaaattaact
gacgcagaaaaagttacactttctgatgtatcaagttttctcatttctcttcgcgcagat
gaatctttagacaggggaagtaagctctggaaagaggtgtgtatttggtttaaagagaac
gatgccatcttcaaaaaagattcagtctatgaatttacaggaagccaacaaatttcatct
ttgagcatgtacacaaaatatttagttgaagattacctaactgttcctgcttcaaaaggt
gaagatgaactcatgccagactggtatgaatcgaggcttgttgccaccatggtacttttg
gctgctgatgtagattcctcaaaagtagacattgctttatcagaaacagctgacttgaat
tttatgttgactcctcttctgacatgtctgtccaaactcagtacaaatgcatatatgcca
attctaaagacagacaagatcttacagttgctcttaaaacttctgcagacgtgttcatca
aaatcagctcaaactaaaacagatgggctattgactgttatctggaatgtaattacaact
actgcaacaaacatttttgagttcattgtaagaaggttaagtggtgagctgaaaacgatt
gcagatctagatcgctgtgatttgtatcttgctgtactttccgagtttgtaaacttatct
ttaaaatttggctggaaaaaaagtttttcaatatggaagtttatatattatttaacaact
gcttcagctgaaaccttgcagcaattgagcaagaaggatgaaaattttggagagcaaatc
caaaaagtagtcagcatggcctgcctggcttcagtgtgtggcatcgcttcttattcttgc
cagtttcaagaggattcgtacaactatgtcagtgtgctttgcagatatttgtcatctatg
cagttaaattccagcctttcaaaacccattgcttgtgatggaaggttactagaagaaacc
acttctcaagggtggggtaaaatagttgcacggtacttacgtgatcagtgggtctgcttg
cattttgttcttcgtaaacatgaatacagtttttctacatcagacataaaaaattctgaa
tttgccccattgattttctctgcaccaacatcatctttacagtcagctcttgatgtactc
actgttgttccctccactgaggcccttccagtttttcattgcatgaagcttctagtacct
aaggttattcattcttctgaacttttagcggtggaatgtatcaatacagcctggaaaatt
gttctgtcctcatgcaacactcaactagtgttttggcccaccttgcaagcctttgttgaa
tttgtcttcagtaatgaagtactttctggagctgcttatactaaaggtcaattgtatttc
cgaataaaagagataatccaagaaacgtctgacatgtccatctcaaagacaggagtattt
aatgtgttggtttctcattgctaccagtcatggacagattattctaagaaacctagtatt
aaagatgatgatcttttacatgcaaaatgttacatggaaatcctcacagaagcatgtgtg
ttcggcactgtttttagacgggatcagaggttaattcaagatacacatgcttttattgaa
agcttaggaaaagattgtgcagcaaatattgctgtgacaagcatgaacagagatgaacac
caggtccggatatgtgcaactgcattctttagttgtttggatgagtcaaatccacttcac
aaggagtttctgcaagaccttgtaattcatcttcttgataaggacatacttgtttccaag
acaaaaacaaggtattatggaaattccctgcatcaccggcttaaaaaccgtctgtggcaa
actatgttaattttgattccaaaacttgaccaggactttctttctggtatcattgacagg
attttccaagctggtttcagtaataatcaagcatcggttaaatatctaatagaatgggcc
attatactgattctccatacacatcccatatttctttccaaattctgggactgttttagc
agtactgaagaaaaacttaaaaccagcatttgcacatttttgtctgtgcttcctcacttt
gatgtagttattgcaaatattcctgataagggagctagtctaaagagggctctagtgact
gtacttcagtggtgtttcaatcacaacttcagtgttcggctttatgcactgattgctcta
aagaaactctgggccatgtgcaaacaacaatgcatacaggaatttgacgaactggcttta
gtaatagagtccagtcttgatcaagtagaaaatatacaaggcactggtaatgcaagaaaa
aactggctacgaatacaaaatcatttcttcttttctacatttcatccattgcaagactac
agcatagagacaattttttacactcttccaagcttgtcagagttaattgaggatgaatgg
atttctccccacaaattctccagctatactagtaatttgtggcaatcctcactcccactc
aacaacccaaggcccatgaatgtagacctgctgtcaagtgactggttacaaaaagacact
gctggcagtgatttgggtgacaatgagacagaatggacagatattcaaaaaaagataatt
ccttggaagaatagtatcccagatattgatttggaaatggctgttcaaaatcgtgctgct
aagcttggaaagtcaagtggaagtcttattgttgtagcatccctcattgataaaccaaca
aatttaggaggtttatgtcgcacttgtgaaatatttggagcttctgcattagttgttgac
agtctccaccatgttaatgataaacagtttcagtatctcagtgtatcagctgaacagtgg
cttccacttatagaggttaaaccaactcagcttctagagtatttgcagcttaaaaaaaat
gagggatacaccataatcggagttgagcaaacagctaaaagttttgatcttacagactat
tgttttccagagaaatccttgctgttacttggaaatgaacgagagggaatccctgctaac
ctaatacagcatcttgatgtttgtgtagaaattccgcaacaaggaataatccgatcgctc
aatgtacatgttagtggtgcagttttgatttgggagtatacaagacaacaaatcatgaag
caaaaagatggaggaaaatag
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integrated database retrieval system
