Xenopus tropicalis (tropical clawed frog): 100494036
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Entry
100494036 CDS
T01011
Symbol
dchs1
Name
(RefSeq) protocadherin-16
KO
K16507
protocadherin-16/23
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
100494036 (dchs1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
xtr04515
]
100494036 (dchs1)
Cell adhesion molecules [BR:
xtr04515
]
Cadherins
Cadherin related
100494036 (dchs1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_FAT4_N
Ig_CLSTN
Ig_Cad99C_N
Cadherin_CELSR2_9th
Cadherin_2
TMEM154
CADH_Y-type_LIR
EphA2_TM
Motif
Other DBs
NCBI-GeneID:
100494036
NCBI-ProteinID:
XP_031753312
Xenbase:
XB-GENE-6049397
UniProt:
A0A8J1J617
LinkDB
All DBs
Position
2:180156574..180209717
Genome browser
AA seq
3238 aa
AA seq
DB search
MPAFTFCLLLLLACSPSWASLGTLELHIDEEQPAGTIIGDISAGLPPGSTGYMFFISAQE
GSGVSTDLDIDENTGIIKTAKVLDREKRNHYSFIAVTPEGTTVEVDIHVDDINDHSPTFS
KGRTELSIPEHTPLGTRYPVDPAMDSDSGVLSTQGYLIRSGDPLQKFRLETRRVSNGVLE
VELVVSSDIDRENQSSYSLVLEAYDGGSPTRSSQMRLDIVILDINDHAPVFNQSRYQALI
SESLLPGASVLQVYATDADQGPNGDVRYEINRRQSDPEGYFTINAQSGLIQINKPLDYET
RKVHELVVQAKDGAEQPEVGTAFVSIQVRDSNDNQPSMTIIFLSEDGAPRVSEGANPGQY
VARISVSDPDYGEHPDVDVSLEGGEGKFALTTKDSIIYLICVDKLLDREERDSYRLRVLA
TDAGTPPLRAESSFVLEVTDVNDNPPVFDRQEYSHTVPEAVHPGSFLLQVTARDRDQGVN
GEVRYSLLPTPWFNINPDTGVITTAAPLDYEQEPHPKITVVASDQGQPSLSSTALVRIHL
LDVNDNEPIFSSPVYNATLSEGTARGSCFLQVSALDSDSGSLGSVSYSLSPTSPQQFRIH
PESGNICTTEALDRDDGERTFLLHVTATDGGGLAAACLVHVTLEDINDNPPVFYPLDYGG
SISVLSPPGTPVLSVSAHDKDEGTHGTLTYLIASGNSPPLFRIDPDSGTLLVARSLAAWA
GSVVYVEVGAQDGEGVRAEVNARVNISILPGTAPVPTFLQSHYQITVPEDTPLGASIGSV
MATNPTGAPGPVLYSISSGDPRGLLSLDPHSGLLSLVRPLDREQTEKLLLEVQGRSGAPP
AYARAHLTLYITDVNDNPPAFPSPFHTLRLQSPIPIGSVIFRAQATDPDTGFNGQVYYEL
DSPGPFSIDGSGQLRATGLLSQERYDVRVLASDGGTPQLSSALELTVLLMELQKEPACGA
SDYRVEVREGSPPLSRLLQVRAQPPGAGEGQLIYRLRPDADAVGFSIEADSGWLYVRGAL
DRESREAYVLAVLASAGPGTRTATCTVRVRVTDENDNSPRLSEERFFLSATENRPPGETV
GRVSATDRDAGPNGRVSYRLPPLESDFHINPHTGELSTRRVLDRELQATYQLLVIAQDGG
APPRSVTGTVHITVLDENDNAPTFLHPNAGKEISLQVMEGKKSGMFIASLQAKDPDEGEN
GTVTYSLAGPWAERFTLDRNTGELRTAAGLIQADRSLYTLSVRATDCGVPSRSTETTLRI
QVIPASRYPSKSNPSSLVLSPMEGLAPGSLLGSLAPRMPHGSRIYTLLDEPHGIFMVDGQ
TGSIFLVGELDFESQPRFSFRVSVEEVREASLGYVPPHVVHIEVEVQDRNDHSPAFPEDP
LTLVVPEDAHVGSSVFTFQASDHDGPGPNSQVRYSLLRQDPGSPGSTFRLDAETGVLYVA
QALDREEVSSYLLVVEASDQAVNVSQQRSTSVTARVFISDRNDHAPQFITPLVVWLPEDL
PVGSTAIYMVAQDPDLGDNGKVGYQLVGGNDEGKFQLHPSSGALTVVRTLDRETTEGYNL
TVVAMDHGSPRLSSTQTLSVSLLDVNDEAPSFEKPQYDAQVQENQPVGTTVLRVVALDRD
LGQSGRVTYGGVSGDEFALDPETGVLTTKVPLDREAKELYKLTVYARDGGSPPRLSEVGV
QVRVGDENDHPPTFERDLVLLEVPENQEPMDLCVLSAWDPDGGENGRLKYRLIEGDPSGD
FTLDSANGKLSTSRPLDRETTPKYQLVVSVSDGGAPPLSATAMVNINVLDLNDNTPAFSA
SAFSAEVPEDAPVGSLVLHLSAVDPDDGPSGQTTYHLSNGTQGAFYIDPLTGRITTATQL
DRERRASYTFLVWAIDSDPVGPRSAEATVTVLVRDVNDNAPAFLRSPFHLNLSRNTPTKR
AIAAMKAEDKDAGANASILYRLAPASATGGFSVDPYTGEVRLLEPLSGMSPKERTVFVQA
TDLGEPPLSSTAVLVVHLREEAPQGPRFPQEAIEISLPENSPEGSVVGTATAAHTGGSTG
RISYSFLSGNENGALRIHPTTGQITVAQAAMLDYEQNPRHKLVLQAETQQHLSFATLTIS
LLDLNDNAPRFKLPRYTAYTQEAQPDGSPLIQVLAEDPDQGLNGQVTYSFDQSQAMKDLF
RIDPQTGAITTAAILDREIWSQAHLVVIATDRGSPPLTSFATLTVLVTDVNDNSPTTPLQ
LELSVPEDAVIGSEILQVTGNDVDSGPALSYTLLVDGAMEGAFTMLRYGGQIWLSRQLDY
EDRKSYSLTVQTSDGKHLTHAELTLTLQDVNDNSPEFGKSLYQVSILEHAAAGTPLFTVR
ATDRDSGDNGRVSYRVLSPVGGAFHIHPDNGTLFANKLVELDPQSPLVDVLVEARDHGSP
SLASLTTVQFLVVDANDHSPTFSQSQYSASVPEDLPLGSTVLILEVTDADFTQENAALDY
TILSGNTDNAFQVQSGMRFWNGRFQQIGSIILTDSLDFEAISFYNLTLGASDRGVPQRSH
SVPVLINVLDINDNPPVFPRPLYSVLLSEEAPVGSEVLRVLAQDSDSGSNGLVHYSITSG
DESRLFQINEATGAIRLARHLDRERQALHALVVLALDGQGGQANFALVPVTIEVRDINDN
KPYFPVQILTTSIRENQPANTPLTKIHAIDLDTGVYGQLFYTMLDLAVAGSGMLMGKDMF
VVNRTSGELRSKQSFDYERIKVFNMVVKAMDAGNFSATVTVQVLVTGEDEYNPVFISPFF
NFEVPEGAVKGESLGHVQATDEDEGADGVVLYSFSKPSPYFGINETTGNIYLKTDSQRHR
SGRSKRETREMTLEVHAHSPLPSSRVATAQVTVDVTHTSFGLAPDLNLLLVVSVASSLAV
VVVLAVVAIVLVICRSRGINKKQQEDDAQLDTLQRSTLQRMGHDKSTLSSGDRIYHQALP
GYTLDSSVGDAPYTRGGSLDPSHSSGRGSAEAAEDDEIRMINEYPRVASITSSMQEHISA
RGPDSGIQQDADQLSDISCDPSMDTEQWFKSKKGSSQSQIYRDDGGGGGAFVGMGCGLNM
SHHKDYSFPEDGKPSVEGSLTAIVASDEELRGSYNWDYLLNWCPQFQPLASVFMEIARLK
DESALRRPFQLKPKSVPQPRIDPPPLITSVAHPGAKTVPPKPAVVRAFPNFSSLRRSPIT
NEASLTSSAIPPSFSPSLSPLAARSPVVSPFGISQGPTASVLSTEHNLDPVGDGELRI
NT seq
9717 nt
NT seq
+upstream
nt +downstream
nt
atgccggccttcaccttctgcctcctgctgctcctggcatgttcaccctcctgggcctct
ctgggcaccctggagttacacattgatgaggagcagcctgctggcaccatcatcggggac
attagtgccggcctccctcctggttctactggatacatgttcttcatctctgcacaggag
ggcagtggggtcagcacggatctggacatcgatgaaaacaccggcatcatcaagacagcg
aaggtcctagaccgggagaagcgcaaccactatagtttcattgcagtcaccccagaaggt
accacggtggaggtggacattcatgtggatgatattaatgaccattcccccacgttttca
aaagggcgaaccgagctgagtatcccagaacacaccccgttgggaactcggtacccagtg
gatccagcaatggactcggacagcggagtattaagcactcagggttacttgatcaggagt
ggagatcctctgcagaagtttcgcttagaaacccgtagagtgtccaatggggtcctggag
gttgagctggttgtgagctcagatatcgatcgtgagaaccagtcaagctactcgcttgtt
ttagaggcttatgatggaggctcgcctactcgcagctcccagatgcggttggacatagtc
attctagacatcaatgaccacgcaccggtgttcaaccagagtcgctatcaggcactcatc
tcagaaagccttctgccgggggcaagcgtcttgcaagtctatgctacggatgctgaccaa
ggccccaatggagatgttcgttatgagatcaatcgcagacagagtgacccggagggctac
ttcactataaatgctcagtcaggcctgatccagatcaacaagccactggactacgagacc
aggaaggttcatgaactggttgtacaagccaaggatggagcagaacaaccagaggttggc
acagcctttgtgtccattcaggtacgggactccaatgacaatcaacccagtatgaccatt
atttttctgagtgaggatggggctcccagagtgtctgagggagctaacccggggcaatat
gtggctcgtatctctgtctcggaccctgactatggagaacacccagatgtagatgtatct
ctggaaggaggagaaggcaagtttgccctgaccaccaaagacagcatcatctatctcatc
tgcgtcgacaaactgctcgaccgggaagagcgggactcctaccgcctgagagttcttgca
actgatgcgggaacaccccctctaagggcggagtcttcctttgttttggaagtgactgat
gtcaatgataacccaccagtatttgaccggcaggaatacagccacaccgttccagaagct
gtgcaccccggcagcttcctcctccaagtaacggcccgagacagggaccagggggtaaat
ggagaggtaaggtacagtctcttgcccaccccatggttcaatatcaacccagacaccggg
gtcatcacaactgcagctcctctggactatgaacaggaaccccatcccaaaattactgtg
gtggcatcagatcagggtcagccgtcgctaagctccacagcccttgtgaggatccatctc
ctcgatgtcaatgataacgagccaatcttctccagcccagtttataatgccaccctgagc
gagggcacggcacggggcagctgcttcctgcaggtgtcggcgctggatagcgacagcggc
agtttggggtcggtctcttactcactgagccccacgtccccccaacagttccgcattcac
ccagaaagtggcaacatctgtaccaccgaggcgctggaccgggacgatggggagcgaact
ttccttctgcacgtcaccgctactgacggggggggtctcgctgctgcctgtctcgtgcac
gtgaccctggaggacattaatgacaaccccccagttttttatcctcttgactatggtggg
agcatcagcgtcctcagccccccgggcaccccagtactgagcgtctcagctcacgataag
gacgaaggcacccacggcaccctcacctacctcatcgcctccggcaacagcccccctctg
ttccgcatcgaccccgactcaggcactctattggtggcccgctctctcgctgcttgggcc
ggctctgtcgtttatgtggaggtgggggctcaggatggggaaggggtaagggcagaagtt
aatgcccgagtgaatatcagcatcctccctggcaccgcccctgtgcccaccttcctgcag
tctcactaccagatcactgtcccggaggatacccccctgggggcaagtatagggagcgtc
atggcgaccaatcccacaggggcccctgggccggtgctgtactccatctcgtcgggggac
ccgcggggtttgctgtccctggacccccattccgggctgctctcccttgtgcggccgttg
gacagggagcagacggagaagctgctgttagaggtacaggggcgcagtggggccccccca
gcctacgccagggcccacctcaccctctatatcactgatgtgaatgacaaccccccggcc
tttccctccccgttccacaccctgcggctccagtctcccatccccattggctcggtgata
ttcagggcgcaggccacggaccccgacaccggcttcaacgggcaagtttattatgaattg
gactccccggggcccttcagcattgacggctctgggcagctgcgggccactggcctattg
agtcaggagcgctatgatgtgcgggtgttggcctcggacggggggaccccccaactctcc
tcggcactggagctcaccgtgctgctgatggagctgcagaaagaaccggcctgtggggcc
tccgattaccgggtggaagtgcgggagggcagccccccccttagccgcctcctacaggtg
cgggcacagccccccggggcaggggaggggcagctgatctacaggctgaggcccgacgcc
gacgccgtggggttcagcattgaggcagatagcggctggctttatgtacggggggccctc
gaccgagagagccgggaggcctacgtactggcagtgttggcatcggccgggccgggcact
cgcaccgccacctgcaccgtcagggtccgagtcaccgacgagaacgataacagcccccgg
ctgagcgaggagaggttcttccttagcgccacggagaatcggccccccggggaaacagtg
ggaagggtcagcgccacggacagagatgccgggcccaacggccgtgtgtcctaccgactg
ccccccctggaatctgacttccatatcaacccccatacgggtgagctctcaacccggagg
gtgttggaccgggagctgcaggccacctaccagcttctggttattgcccaggatgggggc
gcacccccccgaagcgtcactggcactgtccatattactgtgttggacgaaaatgacaat
gcacccacattcctgcaccccaatgcggggaaagaaatatccttacaggttatggagggg
aagaagtcgggcatgttcattgcatccctacaagccaaggacccggatgagggggaaaat
ggaacagtgacctacagcctggcaggtccctgggcagagaggttcacattggacagaaac
acgggggaattacggactgcggcaggactaatacaagcggatcgctccctctataccctg
agtgtaagagccactgactgtggggtcccctctaggagcacagagaccactctacgtata
caggtcattcccgccagtcgttacccttccaagtcaaacccaagtagcctggttctgtct
cccatggaaggattggctcctggttcccttttaggctccctagctcccagaatgccccat
ggctccagaatatacactttgcttgatgaaccccacggcattttcatggttgatggccag
actgggagcatcttcctggtgggagagttggactttgagtcgcagcctagattcagtttc
cgtgtgagtgtggaggaggtacgtgaggcgtctctagggtatgtacctcctcacgtggtc
catatagaggtggaggtgcaggatcggaatgaccattcaccagcatttcctgaggacccc
ttgactttagtggtaccagaagatgcccatgttggctcctctgtctttacattccaagcc
tctgaccatgatggcccaggacccaatagccaggtgagatattccttactgcgccaggat
ccagggtccccaggtagcaccttccgcttggatgcagaaacaggggtgttgtatgtggca
caagcgttagaccgcgaggaagtgtcctcatatctgctcgtggtggaggcctcggaccaa
gcagtaaatgtcagccagcaacgttcaacctctgtaactgcccgcgtattcatcagtgac
cgcaacgaccacgccccacaattcataactccattggtggtgtggctacccgaagacttg
cctgtaggatccaccgcaatctacatggtggcacaggacccagacctgggtgataacggc
aaagttggctatcagctcgttggagggaatgatgagggcaagttccagctacacccgagc
tcaggtgccctcactgtggtccggaccctcgaccgagagacgacggaaggctataatctg
acggtcgtagcaatggaccacggctccccgagactctcctccacccagacactctccgtc
tcccttctggatgtgaatgatgaggctccatccttcgaaaagccacaatatgatgcccaa
gtgcaagaaaaccagcctgtgggcacaactgtactcagagtggtggcgctagacagggat
ttaggccaaagtgggcgtgtcacctacgggggcgtatccggcgatgagtttgccctcgat
ccagaaacgggggtgctcaccaccaaagtacccctagaccgggaggccaaggagctttac
aaactgacagtttatgctcgggatgggggctccccgcctcggctctctgaggttggggtg
caggttagagtgggggatgagaatgaccacccccctacatttgagcgagaccttgtgttg
ctggaggtgccggagaaccaggagccaatggatctgtgcgttctgagcgcttgggacccg
gatgggggagagaacgggcgcctcaagtaccgactaatcgaaggggatccctccggggac
tttacgttggattcggccaatgggaaactctctacgtcgcgcccattggacagagagacg
acgcccaagtaccagctggtggtgtcggtgtcagatgggggggctccgcccctcagcgcc
accgccatggtcaatatcaacgtgctggacctgaatgacaacacccccgccttcagcgcc
tcggccttcagtgcggaggttccagaagacgccccggtgggcagtttggttctgcacttg
tcggcagttgacccagatgacggcccaagtggccagaccacctatcacctgtccaatggg
acgcagggcgccttctacattgaccccctcactgggcgcatcaccactgccacccagttg
gaccgtgagcgtagggcgagctacaccttcctggtttgggccatagattctgacccagtc
gggccccgcagcgccgaggccacagtaacggttcttgttagagacgtgaatgataacgcc
cccgccttcctgcgcagccccttccatctcaacctgtcgcgcaacacccccaccaagaga
gccatcgccgccatgaaagccgaagataaagacgccggtgccaacgcctccattttgtat
cgcttggcgccggcctcggccacggggggtttctctgtggacccctacactggggaggtg
cggctgctggagccgctgagtgggatgagccccaaggaacgcactgtgtttgtgcaggcc
acggatttgggggagcccccactctcttccacggcagtgctggttgtgcacctacgtgag
gaggcgccacaggggccacggttcccccaggaggccattgagatcagtctccctgagaac
agcccagagggatcggtggttggcacggcaacggctgcacatactggtggatccactggg
aggatctcctacagcttcctgagtgggaatgagaatggggcgctccgaatccacccaact
acagggcaaatcacagtagcacaggcggccatgttggactatgagcagaacccccgccat
aagctggttctacaggcagagacccaacagcacctcagctttgccaccctgaccatcagc
ctattggacctgaacgacaacgccccccgcttcaaactcccccgctacacggcctacacc
caggaggcacagcctgatgggagtcccctcatacaggttttggcagaagatccagaccaa
ggactgaatggtcaggtgacctactcttttgaccaatcgcaggcaatgaaagatctgttc
cgcatagacccccagacgggcgccatcaccactgccgccatcttggaccgtgagatttgg
tcccaggcccacttggttgttatagcaacagatcgtggctctcctcctctcaccagtttt
gccaccctaacggttttggtgacggatgtgaatgacaatagccccaccacccccctccag
ctagagctgagtgtccccgaagatgctgtgattggctcagagattctccaggtgacaggg
aatgacgtggactcgggccccgccctgtcgtacaccctgttagtggatggggcaatggag
ggggcatttaccatgttacgatacggggggcagatctggttgtcccgacagttggactat
gaggatcggaagtcgtactcactcaccgtgcaaacgtccgacgggaaacacctcactcac
gctgagctcacactcacactccaggatgtcaacgacaactccccagagtttggcaagagc
ctgtaccaggtctccatcttggaacacgcggctgctgggaccccactctttacagtaagg
gccacggatcgggattcgggggacaatggaagagtcagttacagagttttgtccccagtg
ggcggagctttccacattcaccctgacaatgggaccctttttgctaacaagttggtggaa
ctggatccccagtccccgttggtggatgttctggtggaggcccgtgaccatggctcccca
agcctcgcctccctcactaccgtgcagttcctggttgtggatgccaatgaccactccccg
acattctcccaatcccagtacagcgcctcggtgcccgaggatctcccattgggcagcacc
gtcctgatcttggaagtgaccgacgccgacttcactcaggagaacgccgccctcgactac
actattttgagtggaaacacggacaacgcgttccaggtccagagtgggatgcgcttctgg
aatggccgctttcagcagattggctccatcatcttgacggactcattggactttgaggcc
atttccttctacaacctgaccctgggagcctcagacagaggagtcccgcagaggagtcac
tccgtcccggtgttgatcaatgttctcgatattaatgataatcctccagtctttcctcgc
cctctgtacagtgtcctcctaagtgaagaggctcctgtgggttccgaggtgctacgggtg
ctggcccaggactccgactcggggagcaatgggttggtccattacagtatcacttcgggg
gacgagagccgactctttcagataaatgaggcaacgggagccataaggctggctcgacac
ctggaccgggagcggcaggccctacatgcacttgtggtcctggcacttgatggtcagggg
ggccaagctaactttgccctggttccggtaaccattgaagtgcgagacataaatgacaac
aagccctacttcccagtgcagattctcaccaccagcatccgggagaaccaaccagcgaac
actcctctcaccaaaatccatgctattgacttggacacgggggtgtacggccaactcttc
tacaccatgctggatttggcggtggccgggtcagggatgctgatggggaaagacatgttt
gtggttaacagaacctcgggggagcttcgttccaagcagagtttcgattacgagcgcata
aaggtgttcaacatggtagtgaaagctatggatgccggtaacttctcagccacggtgacg
gtccaggttcttgtgaccggggaggatgaatataacccagtgttcatctccccattcttt
aattttgaagttccggagggggcagttaagggcgagagcctcggccacgtacaagcgaca
gatgaggacgaaggggctgatggggtcgtactttactctttctccaagccatccccgtac
tttggcatcaacgagactacgggcaacatttatctgaagaccgacagtcagaggcaccgc
tctgggcgttccaaacgggagaccagggaaatgacactggaagtccacgcccacagtccg
ctcccctcgtcacgcgtggccacggctcaggtaacagtggacgtgacacatacctccttc
ggcctggcacctgatctgaatttactcctcgtagtgtctgtggcttcctccttggcggtg
gtggtggtgctggctgtggttgccatcgttctggtgatttgccgatctcggggcatcaat
aagaaacagcaggaggatgatgcccagttggacacgttgcagagaagcactttgcagagg
atgggccacgacaagtccacattgtccagtggggatcgaatctaccatcaggccctccct
ggttacaccttggactcatcggtaggagatgccccttacactaggggtgggtcactggat
ccttcacactccagtggtcgtggctcagcagaagcagcggaggatgatgaaattcggatg
atcaacgagtaccccagagtcgccagcataacctcctcaatgcaggaacatatctcggca
cgaggtcccgactctgggatccagcaggacgccgaccagttgtctgacatctcctgtgat
ccctccatggacaccgagcagtggtttaaaagcaagaagggatccagccagtcacagatc
tatcgggatgatggtggtgggggaggagcatttgtggggatgggttgtgggctcaacatg
tcccatcacaaggactactctttcccagaagatggcaagccgtctgtggagggctcactg
actgccattgtggccagtgatgaagaattacgtggcagctataactgggattatctcctt
aactggtgccctcagttccaacccttggccagcgttttcatggagatcgcccgtctcaag
gacgagtccgcattacggagaccgttccaactcaaacccaagtctgtccctcaaccccgc
attgacccacctccccttataacttctgtggctcaccccggtgccaagaccgttccaccc
aagccggctgtagtcagagcgtttcccaacttctcatctctgcgccgctcccctatcact
aatgaagcctcgctcacttcgtctgccataccccccagcttttctccatcactctcccca
cttgcagcacgttcccccgttgtgtccccgtttggcatctcccaaggacccaccgcatct
gttcttagcacggaacacaaccttgaccctgtaggtgacggagagctgaggatttaa
DBGET
integrated database retrieval system
