Xenopus tropicalis (tropical clawed frog): 100494505
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Entry
100494505 CDS
T01011
Symbol
pcdh19
Name
(RefSeq) protocadherin-19 isoform X1
KO
K28837
protocadherin-19, delta 2
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
100494505 (pcdh19)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
xtr04515
]
100494505 (pcdh19)
Cell adhesion molecules [BR:
xtr04515
]
Cadherins
Protocadherins
100494505 (pcdh19)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Ig_CLSTN
Cadherin_2
Cadherin_FAT4_N
Ig_BT4661_3rd
PepSY
Motif
Other DBs
NCBI-GeneID:
100494505
NCBI-ProteinID:
XP_002938421
Xenbase:
XB-GENE-1113172
UniProt:
A0A6I8PMZ1
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Position
8:52784559..52895920
Genome browser
AA seq
1101 aa
AA seq
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MWLWLSREMDLLHILLLLVVSWTRSRALINLKYTVEEEQRAGTVIANVAKDAKDAGFVLD
PRQPAFRVVSNSASHLVDINASGLLVTKQKIDRDMLCRQIPKCVISLEVMSNSMEICVIK
VEIKDLNDNAPSFPTDQIDLEISETASPGTRIPLESAYDPDSGNYGVQTYEITPNDLFGL
EIKTRGDGSRFAELVVEKALDRETQSHYSYIITALDGGDPSNFGTVELNIKVIDSNDNNP
MFEEAAYTVNVPENSALNTMVIDLNATDPDEGTNGEIVYSFNSYVSDKTRELFKIDPKTG
VITVSGAIDYEEGHVYEIDVQAKDLGPNSIPAHCKVTVNVLDMNDNVPVINLLSVNSEVV
EVSENAPPGYVIALVRVSDKDSGINGRVLCKLLGSVPFRLQEYESFSTILVDGRLDREQR
DQYNLTIQAKDSGNPSLQSTKSFTVRITDENDNHPHFSKTFYQVIVSENNTPGAYLLSVS
ARDPDLGLNGSVSYQLVPSQVRDMPVFTYVSINPTSGDIYALRSFNHEQTKAFEFKILAK
DGGNPSLQSNVTVRVIVVDVNDNTPVITAPPLVNGTSEVYIPRNAGVGYLVTMVKADDYD
EGENGRLSYEISEGDRGFFEIDQVNGEIRTTRTFGENSKTTYELIVVAHDHGKPSLSASA
LILIYLSPTLDAQESIGSVNLSLIFIIALGSIAAILFVTMIFVAVKCKRDNKEIRTYNCR
IAEYSYGHQKKSNKKKKISKNDIRLVPRDVEETDKMNVVSCSSLTSSLNYFDYHQQTLPL
GCRRSDSTFLNVENQNTRNAGSNHVYHHTFTNQSPPQPDLIINGMPLPETENYTFDTNYV
NSRAHLIKSSSTFKDLEGNSLKDSGHEESDQTDSEHDVQRGLYCDTAVNDVLNTSANSMG
NQLPEQDQNEGFHCREECRILGHSDRCWMPRVPIPSRAKSPEHGRNIIALSIEATTVDTE
PFEECKTKRTFATFGKDGSENTTDDRATLKGKRTVDLPISSPKVNGAVREAGNGCEAVSP
ITSPLHLKSPLPAKSAAPYNIMHCPGNRDVEQFVSNGPSRPTEAEPRGADSENVMHEINP
LLQECREKDSLGVKRLKDIVL
NT seq
3306 nt
NT seq
+upstream
nt +downstream
nt
atgtggttgtggctgagcagggagatggatttgttgcacattttgcttttgctggtagtg
tcctggactcgatcccgagctctgatcaacttgaaatacacagtggaggaggagcagaga
gctgggactgtaattgccaatgtagctaaggacgctaaagatgctggctttgtgctggac
cccaggcagcctgccttcagagtggtctctaactcagcctcccatctggtggacatcaat
gcatcgggcttgctagtcaccaagcagaagatagacagagatatgctgtgcaggcagatc
cccaagtgtgtcatctcattggaggtcatgtccaactctatggagatttgtgtcattaaa
gtagagatcaaggatcttaatgataatgcacccagttttcctactgaccagattgacttg
gagatctctgaaacagcaagccctggaaccagaatccctctagagagtgcatatgatcct
gattccggtaattatggggtgcagacctatgaaattacccccaatgatctgtttggctta
gaaataaagacaaggggcgatgggtctagatttgctgagctggtagtagagaaagccttg
gatagggagacccagtctcactacagctatattatcacagccctggatggtggggatccc
tccaattttggtactgtggaactaaatatcaaagtgatagattctaatgacaacaaccca
atgtttgaggaggctgcctacacagtaaatgttcctgagaactctgcccttaacaccatg
gttattgatctcaatgccacagacccagatgaaggcaccaatggagagatagtctactct
tttaatagctatgtgtcagacaaaaccagggaacttttcaaaatagaccccaagactggt
gtgattactgtcagtggagctatagattacgaggaaggccatgtgtatgaaatcgatgta
caagctaaagatctgggacccaattccatccctgctcattgtaaagtgactgtgaatgtc
ctggatatgaatgacaatgtgccagtcattaacttgctttcagtcaacagtgaggtggta
gaagtgagtgagaatgctccccctggctatgttatagctttggttagggtctcagacaag
gattctgggatcaatggaagagttctgtgcaaactgctgggcagcgtgccttttaggttg
caggaatatgagagcttttccaccattttagtagatggcaggttagacagagaacagagg
gatcagtacaatcttactatccaggccaaagacagtggcaatccctccttgcaatctaca
aagtcatttacagtgagaattacagatgagaatgacaaccaccctcacttctctaaaaca
ttctatcaggtgattgtctctgaaaacaacacccctggggcttacctgttgtcggtttca
gccagagaccctgacctggggttaaatggcagtgtgtcctaccaacttgttccatcccag
gtcagagatatgccagtgtttacctatgtgtccatcaacccaacctcgggagacatttat
gctctgagatcttttaatcacgagcaaaccaaagcctttgaatttaaaattctagcaaaa
gatggaggtaacccatcactccagagcaacgtgactgtcagggtcatagtggtggatgta
aatgataatactccagtgataactgctccacctcttgtcaatgggacctctgaggtgtac
attccccggaatgcaggtgtgggttacttagtgactatggtcaaagctgatgattatgat
gaaggagagaatggaaggctttcctatgagatttccgaaggggacagaggcttttttgag
attgatcaagtgaatggggagattaggaccactagaacttttggggaaaattcaaagacc
acttatgaactgattgtggtggcacacgatcatggaaagccatcactttcagcatctgcg
ttgattctcatctatctgtccccaaccttggatgcccaggagtccataggatctgttaat
ttatctttgatttttatcattgccttgggatccattgctgcaattctctttgtcaccatg
atttttgtggcagtgaaatgcaagagagacaacaaggaaataaggacatacaactgcaga
atagcagaatattcctatggccaccaaaagaagtccaacaaaaagaaaaaaatcagcaag
aatgatatccgcctcgtaccccgagatgtagaggagacagataaaatgaacgtggtgagc
tgttcctcccttacttcatccctaaactactttgactaccaccagcagaccctcccgctt
gggtgtaggcgttcagacagcacctttcttaatgtggaaaatcaaaacacacggaatgca
gggtccaaccacgtttatcaccacaccttcacgaaccagagccctccacagcctgacctc
atcatcaatggaatgccccttccagagactgaaaactacacatttgatacaaactatgtg
aacagcagagcacatctgattaaaagcagttcaaccttcaaggacttggaggggaatagt
ctcaaggacagcgggcatgaagaaagtgaccagactgacagtgaacatgatgtccaacgg
ggcttgtactgtgacacggctgtcaatgatgtgctgaataccagtgccaattcaatgggg
aatcaactgccagagcaagatcagaatgaaggcttccactgcagagaagaatgtcggatt
cttggacactctgatagatgttggatgccgagagtccccatcccaagtcgcgcaaagtcc
ccggagcatggaagaaatatcattgcactgtcaatagaagccaccacggtggacacagag
ccttttgaagagtgtaaaaccaaaagaacttttgcaacttttggcaaagatggcagtgag
aatactactgatgacagagctactttaaaggggaaaaggacagttgatctgccaatcagc
agccctaaagtgaatggtgctgtccgtgaagcggggaatggctgtgaagctgttagcccc
atcacttctcccttgcatctaaaaagtccactgccagcaaaatctgcagcaccatacaac
ataatgcattgcccagggaaccgcgatgtggagcagtttgtaagcaatgggccgtctcgg
cctacagaggcagagcctagaggggcggacagtgaaaacgtaatgcatgaaatcaaccct
ttactgcaagaatgtcgagaaaaagactctctgggagttaagagacttaaagacattgtc
ctctaa
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