Xenopus tropicalis (tropical clawed frog): 100494953
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Entry
100494953 CDS
T01011
Name
(RefSeq) neural-cadherin isoform X1
KO
K27892
neural-cadherin
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
xtr04515
]
100494953
Cell adhesion molecules [BR:
xtr04515
]
Cadherins
Cadherin related
100494953
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Laminin_G_2
Laminin_G_1
CADH_Y-type_LIR
Mucin-like
Cadherin_CELSR2_9th
Ig_Shg
Cadherin_pro
EGF
Fibulin_C
hEGF
EGF_2
EGF_Teneurin
Laminin_G_3
GATase
Motif
Other DBs
NCBI-GeneID:
100494953
NCBI-ProteinID:
XP_031759339
UniProt:
A0A8J1JN79
LinkDB
All DBs
Position
6:130734600..130780540
Genome browser
AA seq
2999 aa
AA seq
DB search
MGAARRAPDFHCLLFLLLMVPGCQVRAFGPGRDRKALDSDSAELLIGSHTARAPGPGGNP
MGHIRIQMPRGTSADPVTLGQNRAAAERLPAPGPVTSPSLLIPTPPIGTHPVIHSRKLTA
MRPGANSAPSTSIPPPAIAPSTSIPPPAIAPSTSIPPPAIAPSTSIPPPAIAPSTSIPPP
AIAPSTSIPPPAIAPSTSIPPPAIAPSTSIPPPAIAPSTSIPPPAIAPSTSIPPPAIAPS
TSIPPPAIAPSTSIPPPAIAPSTSIPPPAIAPSTSIPPPDIAPSTSIPPPAIAPSTSIPP
PAIAPSTSIPPPAIAPSTSIPPPAIAPSTSIPPPAIAPSVAFLQSHPPFLLSSAPSSLPL
YPLPRRSVRSLLPSAFSCSHTVRVPAVGALGETIFIVPDRRYRGKWFEISWPPDPPVRIE
SGSGRVYLTHRLQGGQTEVQVKVRNLEKDSDWYLCHITIVVPKEESLEWAMYPFPYLACV
DAEAPKGTPVYQLLAHYYNDESSSSGISYYLMEGADQRFEVDKDTGAIRTTGLPLAWNKE
HALTVQATDKRGKKSPYASISILVGSRPPQFTNMTYSLYVPESTAVGEKIAVVEAVSFQN
KRISYFLLMNPSGLFAITQESGELSLTHAVDYESEHHLYHLLVKALEMDSGLSSVTEVMI
HITDDNDCSPEFLQSIYSRDSILETIPVGTSLLQVLAQDCDSGSNAEISYYTQSLEFSVT
PQGVIHSSQLLNYERANHMYEFVVVAVDSGKPPLTGTASVRLRMANVNDEAPVFSQTVYN
TFLSEDAGADTLVATVHAKDPDGDGVTYVIVGGNEEGNFELDNQKGILKLSKTPRPKLMK
RQYLLNVSAIDDNASGGPSSLRSFTQVVVGIYDVNDNKPVFRECAQYSEVTSVLENQPPG
TFVLQVEAHDADSGLNGQVKYSLMHREGTRLAFSIDPDTGLITTLQSFDREKQREYSISV
IATDQAQEPLIGICQVTIHIADINDNDPKFENSRYQYFLREDTPVGTSFLRATALDDDQG
VNAAINYSIAQQQPEYFRINPSTGWVYVNQPISQTSLITRHIVATDGGNRSSNVELTVTV
TNVLNQPPQWEQSKYWVSVPEDVARDTKIVTVKAVSPRGDPRVTYNMEDGLVSETNNPIR
FYLKPNRSGSSASVLVSEPLDYEATQFFTLKIRAQNVAAVPLASFAIVYVNVTDVNDNVP
FFTSSAYEVTVPEGAEIDTSVAQVLATDLDSGLHGKVTYVILRDGSEDHKFFSIDSESGV
IYTRSTFDREKQSSYLIEVQSQDSSESARPEKQGQPNSDTAYVRIFVSDVNDNAPRFPMQ
RYETSVEEDKDVGYVVITVNASDEDEGANAKLRYQITNGNSKGIFDVDQEIGAIFITQAL
NYEQDTQFELRLVASDGKWENHTLVLINVINLNDEVPIFSQTEFHGSILEAITDLPVYVL
QVSATDPDQEADQSALQYSLHGQGANSEFIIDQFNGKIYIQKELDREQRATWRFLVLATD
ENGEGLTGFADVIIDVKDVNDNEPTFLCTTDGCFMGYIPENSPADTTVMEMTAFDLDDPK
SGRNALLTYRIVQNVQNEINLNLFAIHPSTGSIYTVLGSLDREKNDKYLIVVEAKDGGGL
SGTGTATILISDINDHAPVFTQNVYTAMVPENFTINSEVAVLYAWDLDEGENAMMTFSII
GGDDDRKFFIETDKIHKRGIIRLRKKMDYERIHERSFNLTVKVEDMDFYSIAYCVIQVED
SNDHAPVFYPAVLEAISLPEDVSIGTTVVHLSAIDLDSGQNGKFSYHILNSSDVGGLFSV
ATDGWVVVAGHLDRETLAEHNLVILATDLGEPALTGSTSVLIIIGDVNDNAPEFEAQYSP
MIWENTESPHILQVNKTSTLLHVRDNDTEVNGAPFAFSLVHDPFNVHDFSLQDLHNGSAI
ITVLRSFDREVHQVFYLPILITDSGNPPLSSTNTLTILIGDINDHPHSSGHLDCTVYSYK
GILPTVTLGKVPAPDLDEWEHKMYYLEGKSRVFSLNEATGLLTMKEGAIPGVYKLRVKVS
DGTWPDVISTVRIVVHDITEEAALNAISVRISGFTAEDFVLRPPDKISKYELMKYLLLEI
LQAELDNIHIFSVLNTPGLSGCMDIWFAVSGDTRHQAEKLNGIVASSREKIESTLGVQVT
QIGEYECENVKCSHQTGCLVRSSYKQTPTMITAGSVSFGSVTILTKALCSCPSREHQHLS
CSSYERNPCLNGGICVDGNMGYRCECPLSFHGPECQQTKHTFIGQGYAWFPPMALCYESQ
ISLDFITEKGNGLLLFNGPMSPSKYRQTEDFIALELQNGSPLLAINHGSGTLLLQFSTKQ
NLADRRWHNIRIESNGKKVKMILDHCSDALANEADGIRQPLHDRSSCEVSTGTPGNKRFL
DVYQPLQLGGVKHVLPSLHPALQFSGFIGCLRNLKVDSKVYDLEQPLESLNSIPGCTMTD
GLCAVTGSPPCGGHGFCISDLSSIRCHCHPGYHGDNCETVLQEWNFEKDSWIHYQLHILP
SLHSLSVQLMVRTRMASCTILSFVSTNKSSFLRLEVVEGNFAVRFNFGEREHLITLPALR
IDHGQWTSLSFERYDNSFTLMINKGGGDHELTSVMGTSRLFDVDSSSILLGTSLLQGGRN
DFQGCLRDIRLNGRHLPLDGLENGYSSTVSVQGVSRGCHSDACRSQPCQSPLNCIDLWRK
YECRCPADEVEVINNMTGQKHCYPSPCMRWSCRNGGTCVAQSHQKYVCQCRDGYKGRICE
SIQINTAKMIGLSSGSILAISMCLLIFIALLVSYTVWSQWGSSKFHKGGVYHIPPEHESW
EDIRESVINFSEESGIEHNQCWKKASKASGEVVHKSTKITNGYDKHKLKRPLRENVQQLC
SSENDLVLPRPHQPAEESHTGKSTNATFHKLQISTENRHPSFQFYVPQMLWAADNDMKSH
PPDLLHSYTTEGQGSPTGSLSSLDSSSTDEDFNYDVLQEWGSKFDRLKELYRSPSDKDT
NT seq
9000 nt
NT seq
+upstream
nt +downstream
nt
atgggcgctgccagacgagccccggactttcactgcctcctctttctgcttctcatggta
ccggggtgccaggttcgggcatttgggccgggaagggatcgcaaagctctagattccgac
agcgcagaacttctcatcggttcccatactgcccgggcaccaggacccggggggaaccca
atggggcacattcggatccaaatgccccggggcacaagtgcagatcccgtcaccctcggg
cagaaccgggcagctgcggagagattgccggcccccgggcccgttaccagcccttccctg
ctcatccccacaccgccaataggtacccacccggtgatacattcccgcaaacttaccgct
atgcgccctggggcaaattctgccccatcaacttccatcccacccccagctattgcccca
tcaacttccatcccacccccagctattgccccatcaacttccatcccacccccagctatt
gccccatcaacttccatcccacccccagctattgccccatcaacttccatcccaccccca
gctattgccccatcaacttccatcccacccccagctattgccccatcaacttccatccca
cccccagctattgccccatcaacttccatcccacccccagctattgccccatcaacttcc
atcccacccccagctattgccccatcaacttccatcccacccccagctattgccccatca
acttccatcccacccccagctattgccccatcaacttccatcccacccccagctattgcc
ccatcaacttccatcccacccccagctattgccccatcaacttccatcccacccccagat
attgccccatcaacttccatcccacccccagctattgccccatcaacttccatcccaccc
ccagctattgccccatcaacttccatcccacccccagctattgccccatcaacttccatc
ccacccccagctattgccccatcaacttccatcccacccccagctattgccccttctgtt
gcctttctccaatcacatcctccattccttctttcttctgccccctctagtttgcccctt
taccccctgccccgccgctctgtccgctccctcctgccctcggcattctcctgctcccac
acggtccgggtacctgcggttggtgccctgggagagaccatcttcattgtgccagaccgg
aggtaccggggcaagtggtttgagatcagctggccccctgacccaccggtgcggatagag
agcggatcgggacgggtgtatctgactcaccggctgcaggggggacagaccgaggtgcag
gtgaaagtgcgcaacctggagaaagacagtgactggtatttatgccatataacaattgtt
gtgccaaaagaggagagcttggagtgggcaatgtatccatttccttacctggcttgtgtt
gatgctgaagcaccaaaaggcacccctgtataccagctgctagctcattactacaacgat
gaaagttccagcagtggaatttcttactacctaatggaaggtgctgaccagaggtttgaa
gttgataaggatacaggggctataagaacaacaggtttacctctggcttggaataaggaa
catgctctgacagtacaggctactgataaacgtgggaagaaaagtccatatgcctctatc
tccatcttggtgggatctcgcccccctcagtttactaatatgacttatagtctatatgtt
ccagaaagcaccgccgtcggtgaaaaaatagctgttgtggaagccgtgtctttccaaaac
aagcggatttcatacttcttgctcatgaaccctagcggtctgtttgcaattacccaggag
agtggggagctgagtctgacacatgcagtggactatgagagtgagcatcacctctatcac
ttgctcgtgaaggctctggagatggacagtgggcttagcagcgtcacagaggtaatgatt
catatcacagatgacaacgattgctccccagaattcctacagtctatctacagccgtgac
agtattttggaaacgatccctgtgggcacgtccttgctgcaagttctagcacaggattgt
gattctggatccaacgctgagatttcctattatactcagagtttggaattttccgtcaca
cctcaaggtgtcatccattccagccagctcctgaactatgaacgtgccaaccacatgtac
gaatttgtggtagtagccgtagatagtgggaaacctcctctgactggaactgcttctgtt
cgactccgtatggccaatgttaatgacgaggcacctgttttctcccagactgtctacaac
actttcctctcagaagatgcaggcgctgatacattggtggcaactgtgcatgctaaagat
cctgatggggatggtgtgacctatgtgattgttggagggaacgaggagggtaactttgag
ttggacaaccagaaaggtatcttaaaactcagtaagactcctcggccaaagttaatgaaa
cgccagtatttgctcaatgtgtcggccattgatgacaatgcctcaggagggccttcatct
ctgcgtagctttactcaggttgttgtgggaatatatgatgtgaatgacaacaagccggtc
ttcagggagtgtgctcagtacagtgaagttacatcagttctagaaaaccagcctcctggc
acctttgtcctgcaagtggaggcccatgatgccgacagcggcctgaatggacaagtgaaa
tacagccttatgcacagagaggggacaaggctggcttttagcattgacccagacacaggt
ttgatcactactttgcaaagctttgaccgagagaagcagagggaatacagcatttccgtg
attgccaccgatcaggcgcaagagcctttaattggtatctgtcaagtaaccattcacatc
gctgacatcaatgataacgaccccaaatttgagaacagtcgctaccaatatttcctgcgt
gaagacacacccgttgggacaagtttccttcgtgccactgcactggatgatgaccaagga
gtcaatgctgccattaattactctatagctcagcaacaaccagaatattttaggataaac
cccagcacaggatgggtgtatgttaatcagcccatctcccagacctcacttatcactcgg
cacattgtagccacagatggggggaatcggagtagcaatgtggagctcaccgtgactgtc
actaatgtactcaaccagccgccacaatgggagcagtcgaagtactgggtgtctgtgcct
gaggatgtggcacgtgataccaagattgtgactgtcaaggctgtttctccacgtggtgac
ccaagagttacatataacatggaggatggcttagtatcagagacaaacaatccgattcgc
ttctaccttaaacccaataggtcaggtagttcagcttcagtactggtgtctgaacctctt
gactatgaggcaacacagttcttcactttaaaaataagggcccagaatgtggcggcagta
ccgttggcatcttttgctattgtctatgtcaacgttacagatgtcaatgacaatgttccg
ttcttcacttcctctgcctatgaggtgaccgtacctgaaggagcagaaatcgatacctca
gtagcacaggttttagccactgatttagactctggtctccatggaaaggttacgtatgtc
atactgagggatggaagcgaagaccataagtttttttccattgattcagaaagtggggtt
atatatacaaggtcaacatttgatagagagaagcaatcgtcttacttaattgaagtccag
tctcaggactcctcagaatcagcaaggccagaaaagcaaggccaaccaaactcagatacg
gcctatgtaaggatatttgtaagtgatgtcaatgacaatgccccaaggttcccaatgcag
agatatgagaccagtgtggaagaagataaagatgtgggttatgtggttataacagtaaat
gctagtgatgaagatgaaggagccaatgcaaaactcagatatcagattacaaatggaaat
tccaaggggatatttgatgtagatcaagagatcggagcaatcttcataactcaagcttta
aactacgaacaggacacccaatttgagctgaggcttgtggcctctgatggcaagtgggaa
aaccatactcttgttcttattaatgtcattaacttgaatgacgaagttccgattttctca
cagaccgaattccacggcagcattcttgaagcgataactgatctcccagtctatgtgcta
caggtttccgcaactgatcctgaccaagaagcagatcagagcgctcttcaatactctttg
catggacaaggagccaatagtgaatttattatcgaccaattcaatggaaaaatatatatc
cagaaggaactagaccgggaacaacgagcaacgtggcgtttccttgttcttgctactgat
gaaaacggggaaggcctgacgggatttgctgatgtcattatagatgtcaaagatgtgaat
gataatgaaccaacattcttatgtacaaccgatggctgtttcatgggatatataccagaa
aattctcctgcagacactactgtcatggagatgacagcatttgatctggatgatcccaag
tctgggcggaatgcactccttacatacagaattgtgcaaaatgtacagaatgagatcaac
cttaacttgtttgctattcacccatcaactggctccatttacaccgtcctgggctcactt
gacagggagaaaaatgataaatatttgattgttgttgaggcaaaagatggaggagggctc
tctggcacaggcactgccaccatactcatatcagatatcaatgatcatgctcctgtcttt
acacaaaatgtttatactgccatggtcccagaaaactttaccattaacagtgaggtggca
gtcctgtatgcctgggacttggatgaaggagaaaatgctatgatgacttttagcatcatt
ggaggagatgatgaccgaaagttctttatagagacagataaaattcacaaacggggtata
atccggctgcggaaaaagatggactatgaaaggatccacgaacggtcatttaacttgact
gtaaaagtggaagacatggatttctatagtattgcttactgcgtcattcaagttgaagat
tcaaatgatcatgcacctgttttctacccggctgttttggaagcgatatcgctgccagag
gatgtttccattggcaccaccgtagttcacttatcagcaattgatttagattctggtcag
aatggaaagttttcctatcacattctgaattcttctgacgttggaggtcttttctctgtt
gccactgatggctgggttgtagtggctggtcacctagatagagaaacattggctgaacac
aacttggtgatacttgccactgacctaggagagccagcactcactggaagtacgagtgtc
ctgatcatcatcggggatgtgaatgacaacgcacctgagtttgaagcccagtatagtccc
atgatttgggaaaatacagagagtccacatatcttacaagtaaacaagacttcaacatta
ttacacgtgcgggacaatgacacagaagttaatggggcaccgtttgctttctctttagtg
cacgatccatttaatgtccacgatttcagtcttcaggatcttcacaatggaagtgcaata
atcactgttcttcgtagctttgacagggaagtgcatcaggtattttatttgccaatttta
ataactgatagtgggaatccccctctgtcctccaccaacacattaaccattcttattgga
gacataaatgaccatcctcattcttcaggacacttggactgtacagtctacagctacaaa
ggtatccttccaacagtcactcttggtaaggtcccagctccagacttagatgaatgggag
cacaaaatgtattatcttgaaggaaagtcaagagtcttctcccttaatgaagcaacaggc
ctgctaaccatgaaagagggggccatacccggtgtctataagctaagagtaaaagtgtct
gatggaacctggccagatgttatatcaactgtaaggattgtagtacatgatatcacagaa
gaagctgctctgaatgccatatctgtaaggatatccggcttcactgcagaagactttgtc
ctgcggccaccagataaaatcagtaaatatgagctgatgaagtatttactcctggaaatc
ctgcaggctgagctggacaacattcatatattcagtgtgttgaacacccctggactttcc
ggctgtatggatatttggtttgcagtgtctggggacacaaggcaccaagcagagaaactg
aatgggattgtggcttcttctagagagaagatagaatccacactgggggtccaggtgaca
cagattggtgaatatgaatgtgagaatgttaaatgcagtcaccagactggctgtttagta
agaagctcgtacaaacaaacacccaccatgataacagcaggaagcgtctcctttggttct
gtaaccatattgactaaagccctctgctcctgcccttcccgagagcatcagcacctctcc
tgttcctcctatgaaagaaatccctgccttaatgggggcatctgtgttgatggcaacatg
ggctacaggtgtgagtgccccttgtctttccacggaccagaatgccagcaaaccaaacac
accttcatagggcagggttatgcctggtttcctcctatggctctttgttacgaaagccaa
atctccttggattttattactgagaaaggcaacggccttctgctatttaatggccctatg
tcacccagcaagtacagacaaacagaggacttcattgctttggaacttcaaaatgggtct
cctttactggccattaaccacggctctggaacactgctccttcagtttagcaccaaacaa
aatctggccgaccgacgttggcataacataaggattgagagcaatgggaagaaagtgaag
atgatccttgatcattgttcagatgcccttgcgaatgaagcagatggcattcggcagcct
ctccatgatcgatcatcttgtgaagtttccacaggaactcctggaaacaagaggtttctt
gatgtttaccaacctctgcaacttggaggtgtgaaacacgttctaccttccctccatcct
gcacttcagttcagtggatttatcggctgcctccgaaatctaaaggtggacagcaaggtt
tatgatttggagcagccactggagtcattaaatagcatcccaggatgcaccatgactgat
gggctgtgcgcggtgactggatcccccccctgcggaggccatggcttctgcataagtgat
ttgagctccatcagatgtcattgccaccctgggtatcatggtgacaactgtgagacagtg
cttcaggaatggaactttgaaaaggacagttggattcattaccagttgcacattttgccg
agcctgcacagcttatcagtgcagctgatggttcgcacacgtatggcctcgtgcactatt
ctgagctttgtatcaacaaacaaatcttccttcttaaggttagaggtggttgaaggtaat
tttgctgtgcggtttaattttggagaaagagagcatttaatcacgctgccagctttaaga
atagaccatggtcagtggacttctctgagttttgagcgctatgacaattccttcacgcta
atgataaataagggaggtggagaccatgagttaacgtctgttatggggacaagtcggctg
tttgatgtggattcatcatccatcttgttgggaaccagcttgcttcaaggaggaaggaat
gatttccagggatgcctccgggacattcgattaaatggtcgccaccttcctttggatgga
ctggagaatgggtacagctcaactgtcagcgtgcaaggagtcagccgcggatgccattca
gatgcctgcaggagtcagccctgtcaaagtccactcaattgcattgatttatggagaaaa
tatgaatgcaggtgcccagcagatgaggttgaagtgattaataacatgactggccagaag
cactgttatccatccccgtgtatgagatggagttgccgaaatggtggcacttgtgttgct
cagtcccatcagaagtatgtttgccaatgcagagatggatacaaaggaaggatctgtgaa
agcatccagataaatacagccaagatgattggcctgagctctggctctattctagctata
agcatgtgtctgctcatctttatagctttgctggtatcctacacggtgtggagtcagtgg
ggaagctccaagttccacaaaggtggcgtttatcatatcccccccgagcatgagagctgg
gaggacatcagggagagcgtcattaatttcagtgaggagagtggaatagagcacaaccag
tgctggaagaaagcaagcaaagcaagtggagaagtagtccacaagagtacaaagattact
aatggatacgataagcataaactgaaaaggcctctccgggaaaatgtccagcagctctgc
tcttctgaaaatgacttggtcctcccaaggccacatcaaccagcagaggaaagtcacacg
gggaagtctacaaatgcaacgtttcataagttacaaatatctacagagaacagacatccc
agcttccagttttatgtacctcaaatgctttgggctgccgataatgacatgaaaagccat
ccgcctgacctgcttcatagttacaccaccgagggccaaggttctcctactgggagcctc
agttccctggactcctccagcactgacgaagatttcaattatgacgtcctccaggaatgg
ggctctaaatttgatagactcaaggaactgtaccgctcccccagtgacaaggatacatag
DBGET
integrated database retrieval system
