Xenopus tropicalis (tropical clawed frog): 100495209
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Entry
100495209 CDS
T01011
Symbol
col12a1
Name
(RefSeq) collagen alpha-1(XII) chain isoform X1
KO
K08132
collagen type XII alpha
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
xtr00535
]
100495209 (col12a1)
Proteoglycans [BR:
xtr00535
]
Extracellular matrix (ECM) proteoglycans
Others
100495209 (col12a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
VWA_2
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
Collagen
Interfer-bind
FN3_Tor_3rd
Copine
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
100495209
NCBI-ProteinID:
XP_002936246
Xenbase:
XB-GENE-1012295
UniProt:
A0A6I8SQF8
LinkDB
All DBs
Position
5:90880285..91032909
Genome browser
AA seq
3121 aa
AA seq
DB search
MKIRLCSAVTAFCAVLLLSSIEAEVGPPTDLNFEIVNENTVRMSWQRPAERIKGYKITIV
PTIDGPEKELDLPASATQTILTELVPDVEYVVTAISYDELEESVPVFGQLTIQTGGRVTL
EEPKLETSKSPRCSISSVADVVFLVDGSWSVGRNNFKYILDFMVSLVSAFDIGEDKTRVG
VVQYSSDTRTEFNLNSYYKKEELVSAIKRIPYKGGNTMTGDALDYLIKNSFVKTAGSRKG
FPRIAIIITDGKSQDEVEIPARELRSLGVEVFSLGIKAADAKELKQIASLPSLKHVFNVA
NFDSIVEVQDEIITQVCSGVEEQLSELVSGEEAVEPPSDMTVTEISSKSMKITWRPSPSQ
ITGYRIQLLPMLAGSKQHSLNLGPQTTSINVKDLSPDTEYQINLYAMKGLTASEPISTLE
KTQAVKIKVECSGGVDIKADVVLLVDGSYSIGVANFAKVRAFLEVLVKSFDISPSKVQIS
LVQYSRDPFTEFTLNRYDSIEDILKAVNTFPYRGGSTNTGKAMTYVREKVFVEIKGARPN
VPRVMILITDGKSSDAFKDPAIKLRNSDVEIFAVGVKDAVRSELEAIASPPSDTHVYTVE
DFDAFQRISFELTQSICLRIEQELQTIKRKSLTPARDLAFSEVTSNSFRVNWSPAAEDVL
SYLVKYKVAVGEGEEFIVSVPAPKTTTVLSNLLPETTYAVAVLAEYEEGESPPLNGEETT
LEVTGPPRNLRVSDETTDSFKVGWSPAPGNVLRYRIAYRPVAGGARREVTVPGRETVTTL
QNLTPDTKYQVSVIPEYHSGPGKPLTGNGATEEVLGEPRNLRVSDATTSSLKLSWDSAPG
KVLQYLVTYNPSAEGETKEVTVRGNTTSTVLKGLDPSTTYSLSVAALYRSGAGSLLTGEG
TTLDERGSPRNLVTKDITDTTIGASWTAAPGMVRGYRIAWKSLFDDDSGEKNVPGGITNT
VLENLRPETKYKISVFANYRSGEGDPLEGEATTEASPSAKLLKVSDETETTMKVTWQPAP
GNVANYRVIYRPKLGGRQVVAKVPATVSSTVLKRLQPQTTYDITVVPVYKAGDGKPRQGE
GTTASPFKPPRNLKTSDPTISTFRVTWEPAPGEVRGYKITYFPFGEEQYLGELVVGPYDN
TVVLEELRAGTSYKVNVFGVFEKGESVPLIGQEMTTLSDAPEVRIDSSGLECKTKAAADI
VLLVDGSWSIGRPNFRTVRSFIARLVEVFDIGSDRVQIALAQYSGDPRSEWQLNAHSTKK
SLMDAVANLPYKGGNTLTGMALNFILQNNFKAEAGMRAKSKKIGVLITDGKSQDDIVAPS
KKLRDQGIDLFAIGIKNADENELRQIGSDPDETYVFNVADFSLLVNIVDDLTTNLCNSVK
GSGNELEPPSDLVTSEPTPRSFRVTWNPPSHSVDRFRVEYYPVSGGRPLEVFVGRSDRTT
VLTNLKPETEYVVKVYSVLEGESSEPLEGTETTLPIPSVRNLNIYDIGTRTMRVRWEAAL
GATGYLLQYEPVNATVPSTEKELRVGASVTDVLLEDLFPNTEYTLTVYALFDELISDPLT
SQEVTLPIQGVGNIRVRDITHSSMNVLWSAAPGNVLKYIVRYKTEEEEEFKEVEVDGSRT
STRLTDLFSQTLYEISLTAVYDEGVSQPRTTQGTTAPVPAPANLRFSEIAVTSFRGTWEH
GAPDVALYRITWAPVGAIEKKKETIVDGDINTLVFDELEPDTEYEVSVTAIYPDESESED
LIGVERTLPEIISTTPALRTGPRNLQVFNATQNSLTVRWDRAMGDVQKYNIYYKPVSAAG
AEQMTSVGGKQNSVVLQRLQPDTPYNIVVSSRYIGDEEGGNISGRGKTKPLNTVKNLRVY
DPTTSTLNVRWEAAEGNVRRYKIYYVPTAGGPEETVTVPGNTIYSVLRNLQSDTSYTVTV
VPVYSEGEGGRMSETGKTLVRGTVRNIQVYNPTTNTLNVRWEPAPGQVQQYKVNYAPLLG
TRPTESVVVPGNTHNALLEQLIPDTQYSVNVVALYADGEGDPSPGEGKTLPRSGPKNIRV
FGETTNSLSVNWDHADGPVQQYRIIYSPTVGDPIDEYTTVPGRRNNVVLQPLLSDTPYKI
TVVAVYADGDGGQLTGKGRTVGLIAPRNLQVSDEWYTRFRVSWDRIPSPVLGYKLVYQPR
DSDESMEVFVGDVSSYTLQNLSPGTTYDVKVYAQYDTGLSGPLSGPGTTLYLNVTDLTSY
QVSWDSFCIRWTPHRSATSYRLKLNPVDGSRGQEITVTGSESSHCFNGLNQDTQYTATVF
VQTPNLEGRGVSIDERTLIKPTESPTTPPAPPPPPTIPPAREVCKGAKADIVFLIDSSWS
IGDDNYNKVRQFIFNTIGAFDVINPSGIQVSFVQFSDDAQTEFKLNTYADKSQALGALAN
IRYKGGNTKTGKALKFVHEKVMTVENGMRRSVPRVLVVVTDGRSQDDVKKSALDIQQSGF
SVFVIGVADVDYNELRNIGSKPSERHVFIVDDFDAFEKIEDNLINFVCETATSTCPLIYL
EGYTSPGFRMLEAYNLTEKTFASVQGVSMQPGSFNSFPAYNLHKDAFISLPTSELHPEGL
PPSYTIILLFRLLPETPNEPFSLWQITDKGYKPQVGVNLDPSKKTLSFFNKGAAGDTQTV
TFDGNEVKKLFYGSFHKVLIVVSPSYVRIYIDCSEVAEKEIKEAGNITAEGYEVLGKTLK
GDKKSAPFLLQMFDIVCTVTWTSRDRCCDIPATRDEAKCPALPHSCTCAQDSVGAPGPPG
PSGIPGSKGPRGDRGLDGPVGPPGQRGEQGLPGPQGPPGPQGPPGLSIPGEPGRQGIKGD
AGDPGLPGRMGSPGVTGPPGPMGPPGTRGFTGKDGAVGPRGPPGPMGAPGPQGVPGPSGK
PGKQGDNGLPGPLGQKGDKGERGDMASQNMMRSVARQVCEQMINSQMSRFNQMLNQIPND
YYSNRNQPGPPGPPGPPGNAGMRGEPGAAGRSGFPGTPGPQGPPGERGIPGEKGERGNPG
IGSQGPRGLPGPPGPPGESRTGPPGSSGSTGPPGPSGRPGNQGIRGPPGPAGYCDASMCA
SIPYNGQGYPEPYQPESGPQEPENQPYVVPMQQESPDEDFEDYGHEYAEHMRWRRSLPKK
F
NT seq
9366 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattcggctgtgctcagcagtgacagcattttgtgctgtgctgcttctgtcttcc
atagaggctgaagttggtccacctacagacttaaattttgaaatagtaaatgaaaataca
gttcgaatgtcatggcaaaggccggcagaaagaataaagggttacaagattactatcgtc
cctacaattgatggaccagaaaaggaactagatcttccagcttctgctacgcaaaccata
ctaactgaacttgtaccagatgtggaatatgttgtgacagctatttcatatgatgaatta
gaggagagtgtacctgtgtttggccaacttacaattcaaacaggaggtcgagtgacactt
gaagagcctaaacttgagacaagtaaatcaccacgctgctctattagttctgttgctgat
gtagttttccttgtggatggatcatggagtgttggaagaaacaacttcaaatatattctc
gatttcatggtttctctggtctcagcctttgatattggggaagacaaaacccgagtcggt
gttgtgcagtatagctctgacactaggactgagtttaacctgaacagttattacaagaaa
gaggaattagtatcagccataaaaagaataccatacaagggaggcaatacaatgacaggt
gatgcccttgattacctgattaagaactcctttgtcaaaactgccggctcaagaaaagga
tttccaagaatagctatcattataactgatggtaaatcccaagatgaagtggagattcca
gcaagagagctgcgtagcttaggggttgaagttttttcccttggtataaaagcagcagat
gcaaaagaactcaaacaaatagcttctctgccttccttgaaacatgtttttaatgttgct
aattttgattcgattgtggaagtgcaagatgaaataattactcaagtttgctcaggagtt
gaagagcagctaagtgagcttgttagtggagaagaagctgttgagcctccttcagatatg
actgttacggaaatttcttccaaatcaatgaagatcacctggagaccatcgccaagccaa
attacaggctacaggattcagcttcttccaatgttagcgggaagtaaacaacattcactg
aaccttggccctcaaactacaagtataaatgtaaaagatctctcccctgatacagaatac
caaataaatttatatgccatgaaaggactcacagcaagtgagccaatctcaacactggaa
aaaacccaggctgtgaaaattaaagtcgaatgttccggtggtgtcgatataaaagcagat
gtcgttctgcttgttgatggctcctacagtattggtgtagctaattttgccaaagttaga
gccttccttgaagtattagtaaaaagctttgatatttcgcccagcaaagtacagatcagt
cttgtgcaatacagtagagatccatttacagagtttaccttaaacaggtatgactcaatt
gaagacattctcaaagctgtaaatacctttccatatagaggtggctctaccaacactggc
aaagcaatgacctacgtgagagaaaaggtctttgttgaaattaaaggagcaagaccaaac
gtccctagagtcatgattcttatcaccgatggaaagtcatcagatgcctttaaagatcca
gctataaaactgcggaattcagatgttgagatttttgcagttggtgtgaaggatgcagtg
agatctgagctggaggccattgcttctcctccttcagacacccatgtgtacacagtggaa
gattttgatgcttttcaaaggatttcttttgagctaacacagtctatctgccttagaatt
gagcaagagctacaaacaataaaacgtaaatctttgacccctgcaagagatttggctttc
tctgaggttacatccaacagttttcgtgtgaactggtctcctgcggctgaggatgttttg
tcataccttgttaaatataaggtggctgttggagaaggtgaagaattcatcgtttccgtg
ccagcaccaaaaacaaccacagttctttcaaatttacttccagaaactacttatgctgtg
gctgtcctggcagaatacgaggaaggagagagtcctccattaaatggggaagaaacaact
ttagaagttactggcccaccaagaaacctgagagtaagtgacgaaacaactgatagcttt
aaagttggctggtcaccagctcctggcaatgtactgaggtacagaattgcctaccggcct
gtggcaggaggggcaagaagagaggttacagtcccaggaagggagaccgtgacaacactc
cagaacctcacacctgatacaaagtaccaagtatctgtgattcctgaatatcattcgggt
cctggaaaacctttgacaggaaatggagccacagaagaagtgttgggagaaccaaggaat
ctgagggtttctgatgccacaacctccagtttaaaactgtcctgggattcggcaccaggc
aaagtgttacagtatcttgtaacttacaacccttctgcagaaggggaaactaaagaggtt
acagtaagaggaaatacaaccagtacagtactgaagggattagacccaagcaccacatac
tccctttctgtagctgcactctatagatctggcgctggctcattacttactggggaagga
acaactcttgatgaacgtggttctcctcgtaacctggtaaccaaagacattacagacact
acaattggagcatcatggacagcagccccagggatggttcgtggttacagaattgcatgg
aagtctctttttgatgatgactctggagaaaagaatgttcctggtggtattactaacact
gtgctggaaaacctgaggccagaaacaaagtataaaatttcagtgtttgctaattataga
agtggagaaggagaccctcttgaaggagaagccaccactgaagcgtcaccaagtgccaag
ctgcttaaagtcagtgatgagacagaaactacaatgaaggtaacctggcagcctgcccca
ggaaatgttgcaaattatcgggttatatatcggccgaagcttggaggaaggcaagtggtc
gctaaagtgccagctacagtctcctcaacagtactgaaaaggcttcaacctcaaacaacc
tatgatattacagttgttcctgtttataaggcaggggatggaaaaccaagacaaggagaa
gggacaacagcttctcctttcaagcccccaaggaatctgaaaacatctgaccccacaatc
tcaactttccgagtcacctgggaacctgctcctggtgaagttaggggttataaaatcaca
tattttccttttggagaggagcaatatttgggagagttagtagttggaccatatgataac
actgtggtactagaagaactcagggcaggaacatcttataaagtcaatgtatttggagtt
tttgaaaaaggagagagtgtacctttaattggacaagaaatgacaacattgtcagatgct
cctgaagttcgcattgattcgtcaggcctggaatgcaaaactaaagctgcagctgatata
gtgttgctggtggatggctcttggagtatcggccgcccaaattttaggaccgtcaggagt
tttatagcacgactggttgaagtctttgatattggctcagacagagtgcagattgccttg
gcccaatacagtggggaccctcgatctgaatggcaactcaatgctcatagcacaaagaag
tctttaatggatgccgttgcaaaccttccttacaaggggggtaacactcttacaggcatg
gctctgaatttcatcttgcaaaataacttcaaggcagaggcaggcatgagagcaaagtca
aagaaaattggtgtcttaatcactgatggaaagtcacaagatgacattgttgcaccttcc
aaaaagttacgagaccagggaatagacttatttgcaattggtatcaaaaatgctgatgaa
aatgaactgaggcagattggctcagatccagatgagacttacgtatttaacgttgccgat
ttttctttgcttgtcaatattgttgatgacctcactaccaatctatgtaacagtgtgaaa
ggctcaggaaatgaactggagccaccttcagacctagtaacatcagagcctacaccacgg
agcttcagagtcacatggaatccaccttctcacagtgtagaccgatttagggtggaatat
tatccagtgtctggtggtcgacctctggaggtatttgttggcagatcagatagaactacg
gttttgactaatttaaagccagaaacagagtatgttgtgaaagtgtattctgtgttagaa
ggagaaagcagtgaaccattagaaggcacagaaacgacattgcccatcccttcagtcaga
aatcttaacatatatgatataggaaccagaacaatgagagttcgatgggaagctgcgctt
ggagctactggttatttattgcagtatgagccagtaaacgctactgtgccttcaactgaa
aaagagttgagagttggtgcatcggtgacagatgtacttctggaagatttattccccaac
actgagtacaccttgactgtatatgcactttttgatgagctgatcagtgatcctcttacc
tcacaggaagtcactttacccattcaaggcgtggggaacattagagtgagagatatcact
cacagctcaatgaatgtcctttggagtgctgctcctggaaatgttctcaaatatatagta
agatataaaacagaggaagaagaagaattcaaagaggtggaagtggatggatcaaggaca
agtacacgacttactgaccttttctcacaaactctatatgaaatcagtttaactgcagta
tatgatgaaggagtatctcagccacgtactacacaaggaactacagcaccagtaccagct
ccagcaaacctccggttttctgaaatagcagtaacaagtttccgaggtacttgggagcat
ggggctccagatgtagctttgtacaggataacgtgggcaccagttggagccatagaaaaa
aagaaagagacaattgttgatggtgatataaacactttggtttttgatgaactggaacca
gacacagagtatgaggtttcagtaactgcgatttaccctgacgaatcagagagtgaagat
ctgatcggtgttgaaaggacattgcctgaaataatttctacaacacctgccctaaggact
ggccctaggaatctacaggtgttcaatgcaacacagaatagtttgactgtacgatgggat
cgtgctatgggcgatgtgcaaaaatacaatatctattataagcctgtttctgctgctggt
gctgaacaaatgacaagtgttggtggaaagcagaacagtgttgttcttcagcgactgcag
ccagacactccatacaacattgttgtttcatcaaggtacattggagatgaggaaggagga
aatatctcagggagaggaaaaacaaagcccttaaatacagtgaagaatctaagagtgtat
gacccaacaacaagcactttaaatgtacgttgggaagctgcagaaggaaatgtgcggcgg
tataaaatttactatgtaccaactgctggaggaccagaggaaacggtgacagtgcccgga
aatacaatctattcagttcttaggaatcttcagtctgatacatcatatacagtaactgtt
gttcctgtctattctgaaggagaaggaggtcgtatgtcagaaacaggaaagactttggtg
cggggaacagttcgaaatattcaagtatacaaccccacaacaaacactttgaatgttcgc
tgggagcctgcgcctggacaggtccagcaatataaagtcaactatgctccacttcttgga
acaaggcctactgagtctgttgtagttcctggcaatactcacaacgcgctgctggagcaa
cttattcctgacacacagtactctgtaaatgttgtggctctttatgcagatggtgagggg
gatcctagccctggtgaaggaaaaacattacctcgcagtgggccaaaaaatattagagtt
tttggagagaccactaacagtctctctgtgaactgggatcatgctgatggaccagtccaa
caatacagaatcatctattcaccaactgttggagaccccattgatgaatatacaacagtg
cctggtaggagaaataatgtggtactgcagccccttttgtctgacacgccatataaaatt
actgtggtggcagtttatgctgatggtgatggaggacaactgacaggaaaaggaaggaca
gtgggtttgattgcaccacggaaccttcaagtgtctgatgaatggtacacaagatttagg
gtttcctgggatagaataccatctcctgttcttggatacaagctggtttatcagccacgt
gattcagatgaatcaatggaagtatttgtcggggatgtgagctcctacactttgcagaac
ctgtctcctggcaccacatatgatgtgaaagtttacgctcagtatgatacaggattaagt
gggcccctatcaggacctgggacaactttatacttaaatgtaaccgatttgacaagctat
caggtttcatgggactcgttctgtataagatggactcctcaccgatcagccacttcctac
agactgaaactgaatccagttgatggatctcgaggtcaagaaataacagtaacaggatca
gaatcatcacactgttttaatggactgaaccaagatacacagtacacagctactgttttt
gtgcaaacacctaaccttgaaggacgaggagtttcaatagatgagcgtacattgatcaag
cctacagaatcaccaacgacaccacctgctcctcctccaccccctacaattccacctgct
cgggaggtgtgcaaaggggccaaagcagacatagtattcctcattgacagttcgtggagt
attggtgatgataactacaataaagtccgtcagtttatcttcaatactattggagcattc
gatgtaatcaacccttctggaatccaggtctcttttgtgcagttcagcgatgatgcccag
acggagttcaagttgaacacttatgccgacaaatcacaggctctaggagcacttgccaat
atcagatacaaaggaggaaacacaaaaacaggaaaggctcttaaatttgtccacgagaaa
gtgatgacagttgagaatggaatgagaagatctgttcctagggttctggtagtggtgact
gatggcagatctcaggatgatgttaagaaatcagccttggacattcagcaatctggtttt
agtgtctttgtcattggtgtggctgatgtggattataatgagctaagaaacattggcagt
aaaccaagcgagcgccatgtttttatagtcgatgactttgatgcttttgagaagattgaa
gataacctgatcaactttgtatgtgagactgcaacatccacttgcccacttatttacctg
gaaggatacacttcaccaggtttcagaatgctggaagcatataacctgacagagaaaact
tttgcctcagtacaaggtgtctcaatgcaaccaggatctttcaacagtttccctgcatac
aacctacataaagatgccttcatttccctgcctacctcagaattgcacccagaaggatta
ccaccttcatatacgattatattgctattccgtctgctgccagaaactcccaatgagcca
ttttctctatggcaaataacagataaaggttacaagccacaagtaggagtaaatcttgat
ccatctaagaaaacactgtcgttctttaataagggagctgctggggatactcagacagta
acatttgatgggaatgaagtgaagaaactcttttatggaagcttccacaaggttctcatt
gtggtttctccatcatacgtcagaatttatattgattgtagtgaagttgctgaaaaagaa
atcaaagaagctggcaatattacagcagaaggatatgaagtacttgggaagacattaaag
ggtgataaaaaatctgcacccttcctgctccagatgtttgacattgtgtgtactgtgacc
tggacaagtcgagatagatgctgtgatattcctgctacaagggatgaagccaaatgtcca
gctctgccccattcctgtacttgcgcacaagacagcgttggagcaccaggacccccaggc
ccatccggtattcccggtagtaaaggaccacggggtgaccgaggtttggatggaccagtt
ggcccaccaggtcagcgaggagaacaaggtttgcctggtccacaaggaccacctggacct
caaggaccacctggactttccattcctggagaacctggtcgtcaaggaataaaaggagat
gccggtgacccaggattgccaggaagaatgggttccccaggggtgacaggaccaccaggg
cctatgggtccaccaggcacaaggggtttcacaggaaaggatggtgcagtaggacccaga
ggaccaccaggaccaatgggagcacctggacctcagggagtgccaggtccaagtgggaaa
ccaggaaagcaaggagataatggattgccaggtcctcttggacagaaaggagacaagggt
gagaggggagacatggcatctcagaatatgatgagatcagtagcaagacaagtctgtgaa
cagatgataaatagtcaaatgagcagatttaatcagatgttgaaccaaattccaaatgat
tactattccaatcgcaatcagcctggtcctccaggtcctcccggtcctccaggcaacgct
ggcatgagaggagaacctggagctgctggcagatctggattcccaggaacacctggtcct
caaggaccacctggagaaagaggaataccaggagagaaaggggagagagggaacccagga
attggatcccaaggacccaggggacttccaggacctccaggacctccaggcgaatccaga
acaggacctccaggatcctcaggctccacaggacctccaggaccttcaggtcgccccggt
aaccaaggaattagagggcctcctggtccagctggatactgtgatgcttcaatgtgtgca
agcattccttacaatgggcaaggatacccagaaccttatcagcctgaaagtggaccgcag
gagccagagaatcagccttacgtagtacctatgcagcaagagagtccagatgaggatttt
gaggactatggacatgaatatgcagaacatatgcgatggaggagatccttaccaaagaaa
ttttaa
DBGET
integrated database retrieval system
