Xenopus tropicalis (tropical clawed frog): 100495290
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Entry
100495290 CDS
T01011
Name
(RefSeq) collagen alpha-1(I) chain isoform X4
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
100495290
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
xtr00536
]
100495290
Glycosaminoglycan binding proteins [BR:
xtr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100495290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
100495290
NCBI-ProteinID:
XP_002943642
UniProt:
A0A8J0QZ45
LinkDB
All DBs
Position
8:4456022..4580585
Genome browser
AA seq
1533 aa
AA seq
DB search
MGSPDMSLSIRRLLFLLCLALTPSTADPQPISPTNTSGKVPQGRGVGTQHRGSLDSQRLI
NEVDLLLLEEEGFIPSFVGGEQDGAKAAKKEGQHKKLDPAEENITIEKQEKVPERLPTDK
SSSDLLDLAKDPKPIPWSTPASTSAPFHSTAVPDLSLETKNKTSIDMAPTPSHATDPQKA
AGNASRESNGIQTGKPKRPVARGPPGPRGSPGCPGRPGFPGPKGDKGQPGIRGRTGVTGN
PGPNGPPGLPTVMIWSNSKEDWAAFYQTSFYQLLHAGWPRIRGSTGFPGMPGTPGTPGSM
GPPGRPGIKGQQGSMGTLGPKGMQGMPGTPGRDGSPGLDGKPGSPGTTGAKGPQGFKGDQ
GPLGEKGEEGFQGSPGPSGEEGVKGAKGVKGEAGPVGPSGVQGPMGAKGSLGFPGPPGPI
GDMGIPGTPGPPGPEGEQGQPGTPGTQGLNGSQGDLGPPGIIGHRGPQGPPGIEGIRGPP
GPRGPQGLMGADGPQGPQGSTGDPGPMGVRGERGLEGPMGLIGWPGPDGPPGDKGRPAAD
AEKGDPGPKGEKGCPGSPGIKGPSGEQGHVGFVGFPGPKGQMGPIGAPGDEGQVGASGLN
GSDGPKGNRGPDGPKGVTGPRGNQGRMGQRGLVGMPGASGQRGAGGPEGAEGLPGTQGPS
GATGNPGSRGLTGPEGSQGDAGREGPPGQMGPPGREGIDGEPGDSGERGFTGKPGPEGPQ
GPVGMYGFHGPAGERGRTGYPGEKGELGPPGIQGPPGKVGLKGPPGPPGERGPPGPQGRL
GEPGIQGLPGLQGPAGNPGPDGEPGKGGRPGETGPAGSIGDPGSPGYQGRDGAAGAEGPP
GEKGEKGEIGPVGDQGVSGLDGEQGEPGSTGHEGSVGHKGDQGDPGPPGNPGLNGPVGDL
GARGLQGLVGPPGEPGKEGDVGEIGDVGDHGPQGEKGDKGPLGSTGNPGPGGIIGERGNR
GEKGDKGLSGPLGPPGLIGSTGPSGLQGEMGNVGKQGSPGLDGPQGLKGETGSTGETGQL
GPPGPMGPPGKKGEKGERGQTGRPGTEGPRGINGNQGPQGFIGQEGLKGEDGSPGNTGIL
GVTGPRGESGPIGAPGREGKEGEKGQPGEHGVPGKPGPPGNPGQEGNVGQRGEKGDSGID
GRPGRAGNPGRKGRRGKAGPRPPRGPAGLKGLQGDKGSEGPEGPRGPYGIPGLRGTKGEP
GRRGIKGELGLDGPIGLQGEEGLKGPQGPTGERGPFGIKGEQGIEGPPGSQGLPGPQGAP
GPPGIEGHKGFSGSEGPRGPPGPPGLPGAPGLPGPSLNLTAQSLKRTFFHAGALSVEGPW
DLLHRLEEDLKHLRSPPNGSKENPASTCKELQLVQPHLSDGHYYVDPNQGSPQDSFLVFC
NFTAGGETCLLPEESQIPVRPWLQDYQASEGFQWFSTLPGGFMFRYSETGVVQLRFLRLQ
SSAVHQGVSYVCQGQPGVAAKDKNVKFLTDTRDQSFLVTLQGCEWEETSNRTGTLLHFAP
SDLSLLPLRDLAMLHDGDIGHQFGFLVGPTCYS
NT seq
4602 nt
NT seq
+upstream
nt +downstream
nt
atggggagccctgacatgtcccttagtatccggaggctgttgttcctactctgcttggcc
ctcacccctagcactgcggacccccagccgatttccccaacaaacacgagtgggaaggtc
ccccaaggacggggcgtcgggacacaacataggggcagtctggactctcagcggctcatc
aacgaagtggatctgttgcttctggaagaggaaggcttcattccctccttcgtcgggggc
gagcaggacggcgccaaggcggccaagaaggagggacaacacaaaaaactggaccccgct
gaagagaacatcactatagagaagcaagaaaaggtccccgagcgccttccgactgacaaa
tccagtagtgacctcctagacttggccaaagaccccaaaccgattccatggtctacacct
gcttccaccagtgcccccttccactccacggccgttccagatctctctttagaaacaaag
aacaagacaagtatagacatggcacctactccgtcccatgccaccgatccgcagaaggct
gctgggaacgcaagccgcgagagcaacggcatccagacagggaaacccaaaagacccgtt
gcccgtgggcctccgggaccccgtggtagtcctggctgccctggtcgtcctggatttcct
ggaccaaaaggagacaagggccaaccgggaataagggggcgtacaggagtgactggcaac
cccggtcccaacgggccccctggactacccaccgtaatgatctggagcaactctaaagaa
gactgggcagctttctatcaaacgtcgttctatcagctgctgcacgcaggctggcctaga
atccgtgggtcgaccggcttccctgggatgcccggaacgccaggaactccaggttcaatg
ggacccccggggcgacctggaatcaaaggacagcaaggttccatggggaccctggggccc
aagggtatgcaagggatgccggggacaccaggaagggacggatctccgggattagacggg
aagccgggatctccggggacgacaggagccaaaggccctcaaggatttaaaggggaccaa
ggacctctcggcgagaaaggagaagaaggatttcaaggatctccagggccaagtggtgag
gaaggagtcaaaggagccaagggggtgaagggagaggccggtcccgtgggtccttcgggg
gttcagggcccaatgggtgctaaaggttctttgggatttccaggccccccaggaccaata
ggagatatgggaattcctggaactcctggtccaccggggcctgagggagaacaaggacag
ccaggaaccccaggaacccagggcttgaatgggtcccagggtgatctgggtcctccggga
ataattggtcatcggggaccacagggtcctcctggaatagaaggtataagaggacctcct
gggcccagaggaccacagggattgatgggagccgatggaccccaaggtccacaaggaagc
acaggggaccctgggccaatgggagtaagaggagaacggggacttgaaggacccatggga
ttgattggatggccaggaccagatggacctcctggtgataagggtcgccctgctgcagat
gccgaaaaaggagatcctggaccaaagggggaaaaaggttgtccaggatctcctggcatc
aaaggtccttctggagagcaaggccatgttggttttgtgggtttcccaggacctaaaggt
cagatgggccccatcggagctccaggggatgaaggccaggttggagcttcaggtctcaac
ggcagcgacggaccaaagggaaaccggggacctgatgggccaaagggggtaacaggacca
agaggaaatcagggtcgtatgggccagagaggacttgtaggaatgccaggagcatcaggt
cagcgaggagccgggggccccgagggagcagaaggacttcctggtacacagggacccagt
ggcgcaacagggaatcctgggagtagggggcttacgggtcctgaagggtctcaaggggac
gctggaagagaaggacctccaggccaaatggggcctcctgggagagaagggattgatgga
gaaccaggagattctggcgaaaggggatttacagggaaaccaggcccagaagggccacag
gggccagtaggcatgtatgggttccatggccctgctggagagagaggtcggacgggatac
cccggggagaagggggaattgggacctcctgggatccaagggccaccaggaaaagtggga
ctaaagggtcctcctgggccaccaggggaaagaggcccaccaggaccccagggtcgacta
ggagaaccaggcatccagggtttgcccggccttcagggcccagctggtaacccggggcca
gatggggagcctggaaagggtggacgtccaggtgaaaccgggcctgctgggagtatagga
gacccaggatctccaggataccagggtcgagacggagcagcaggtgctgaaggaccccca
ggagagaaaggagaaaagggagaaattgggcctgtaggagaccaaggggtgagcggtttg
gacggggagcagggagaacctgggtctactggacatgaaggatcagttggccataaagga
gatcagggggaccctggtcctccagggaatcctggtctaaacgggcctgtaggagaccta
ggggcaagaggactgcagggcctggtgggacccccaggggaaccagggaaggagggagat
gtgggggaaattggagatgttggagaccacggtcctcaaggagaaaagggagacaaaggg
ccactgggtagtaccgggaacccaggacctggcggcattataggagaacgaggcaatcga
ggtgaaaagggggacaaaggcctgagtggacctctgggacccccggggttgattggatct
acaggaccttctggtctacagggagaaatgggaaatgttggcaaacaagggtccccaggt
cttgatggacctcaaggtttgaagggggaaactggttccactggagagactggtcaactc
ggtccccctgggccaatgggcccacctggaaagaaaggggagaagggggagcgaggacag
actgggagaccaggaacagaggggccacgaggcattaacggcaaccaggggccacaaggt
tttattggccaagagggactcaagggggaagatgggagcccgggaaatacaggaatcctg
ggggttacggggccacgtggggagtctggacccataggggcaccaggaagagaagggaag
gaaggagaaaaggggcaaccaggagaacatggagttccagggaaaccggggccccctgga
aacccaggacaagaagggaatgtggggcagaggggagaaaagggtgacagtggcattgat
ggccgccctggcagagcagggaatcctgggagaaagggcagaagagggaaagcaggtcca
aggccaccaagaggacctgcaggtctcaagggtctacaaggagataagggttcggaagga
ccagaaggacccagaggaccatatggcattcctggactcagaggaacgaaaggtgaaccg
ggtcgaagaggtataaagggtgagctgggcttggatggaccaataggactgcaaggagaa
gaagggctgaagggaccacaaggaccgaccggggagcggggacctttcgggatcaaaggg
gaacagggaattgaggggccacctggctctcaaggattacctggaccccaaggtgcacca
ggaccaccagggatagagggacataaaggattctctggatctgaagggcccagagggcca
cctggaccaccggggcttcctggtgctcctggactcccaggaccttctctaaacttaacg
gcccaaagtttaaagcggaccttcttccatgccggggccttgagcgtagagggaccttgg
gatcttctgcatcgtttggaagaggacttgaaacacttgcgctctccgcccaatggttcc
aaagaaaacccagccagcacctgtaaggaacttcagctggtgcaacctcatctgtcggat
ggtcattactatgtagatcccaaccaggggagtccacaggattctttccttgtgttctgt
aacttcactgcaggcggtgagacgtgtctgctccctgaggagagccaaatacctgtcaga
ccttggcttcaggactatcaggcttctgagggtttccagtggttcagcactcttcctggg
ggctttatgttcaggtacagtgaaacaggagtcgtccagctgcggttcctgaggctacag
agcagcgccgtacatcagggggtgagctacgtgtgccaaggtcagcccggcgtcgctgcg
aaagacaagaatgtgaagtttctgaccgatacccgggatcagagctttctagtgactctg
cagggctgtgagtgggaagagacttcaaacagaacaggaactctcctccactttgccccc
tcagacctcagcctccttcctctcagagacttggccatgttacacgatggggacattggg
caccagtttggtttcttggtgggtcctacctgctacagctga
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