Xenopus tropicalis (tropical clawed frog): 100495365
Help
Entry
100495365 CDS
T01011
Symbol
myo5a
Name
(RefSeq) unconventional myosin-Va isoform X14
KO
K10357
myosin V
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04814
Motor proteins
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09140 Cellular Processes
09142 Cell motility
04814 Motor proteins
100495365 (myo5a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xtr03019
]
100495365 (myo5a)
04131 Membrane trafficking [BR:
xtr04131
]
100495365 (myo5a)
03029 Mitochondrial biogenesis [BR:
xtr03029
]
100495365 (myo5a)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
xtr04812
]
100495365 (myo5a)
Messenger RNA biogenesis [BR:
xtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Cargo complex
100495365 (myo5a)
mRNA cycle factors
P-body specific factors
100495365 (myo5a)
Membrane trafficking [BR:
xtr04131
]
Others
Actin-binding proteins
Myosins
100495365 (myo5a)
Mitochondrial biogenesis [BR:
xtr03029
]
Mitochondrial quality control factors
Mitochondrial dynamics
Retention of mitochondria
100495365 (myo5a)
Cytoskeleton proteins [BR:
xtr04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Myosins
100495365 (myo5a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myosin_head
DIL
IQ
Csm1_N
Myosin_N
AAA_16
AAA_22
HTH_17
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
100495365
NCBI-ProteinID:
XP_002936393
Xenbase:
XB-GENE-1004102
UniProt:
A0A6I8Q250
LinkDB
All DBs
Position
3:101886637..101985906
Genome browser
AA seq
1828 aa
AA seq
DB search
MAASELYTKHARVWIPDPEEVWKSAEILKDYKPGDTVLRLRLEEGTDLEYRLDAKTKELP
PLRNPDILVGENDLTALSYLHEPAVLHNLKVRFIDSKLIYTYCGIVLVAINPYEQLPIYG
SDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYF
ATVSGSASETNVEERVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRILGAHMR
TYLLEKSRVVFQAEEERNYHIFYQLCASASLPEFKMLRLGTANDFHYTKQGGSPVIEGVD
DQREMKNTRQACTLLGIGDSYQMGIFRILAAILHLGNVEFKSRDSDSCLVPPKHAPLNIF
CDLMGVEYEEMSHWLCHRKLVTAAETYIKPISRLQATNARDALAKHIYAFLFNWIVCHVN
KALHSSTKQNSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNLHVFKLEQEEYMKE
QIPWTLIDFYDNQPCINLIEAKMGILDLLDEECKMPKGSDSTWAQKLYNTHLKKSALFEK
PRLSNVAFIIKHFADKVEYQCEGFLEKNKDTVFEEQIKVLKASKFTLLTELFQEEEQILS
PTSSAPPSGRTLLSRTGLRSLKPKPEQTSKEHKKTVGHQFRNSLHLLMETLNATTPHYVR
CIKPNDFKYPFTFDSKRAVQQLRACGVLETIRISAAGFPSRWTYQEFFSRYRVLMKQKDV
LSDRKQTCKNVLEKLILDKDKYQFGKTKIFFRAGQVAYLEKIRADKLRMACIRIQKTIRG
WLLRKKYLRMRKAAITIQRYVRGYQARCYAQFLRRTQAAIIIQKFQRMYVVRQKYRHMQS
ITLALQSYMRGYAARKRFQGMLRAHKATIIQKHVRGWLARVTYKRNLSAIVYLQCCYRRM
MAKRELKKLKIEARSVEHYKKLNNGMENKIMQLQRKVDEQNKDNKSLLERLTHLEVTYNT
EKDKLRSDVDRLRHFEEEAKNAANRMVSLQDELARLRKELQQTQTEKNKIEERAEKYQTE
TEKLVAELREQNALLKAEKEELNLLIQEQAKKMTEDMEKKIIEETKQLELELNDERLRYQ
NLLNEYSRLEERYDDLKDEINTMSPPKPGHKRTDSTHSSNESEYTFSSEITESEDYPYRN
EEPADRKTPLDMSLFLKLQKRVKELEQEKQVMQDDLDKKEEQIIRAKIMEEAKTPTRGTE
LEYESLKRQELESENKKLKNELNELRRAITEKASPDATGPGGTVYKVLLEQMTSVSEELE
VRKEEVLILRSQLVSQMEAIPHKDDKDTMTDSMVLSEDVQKMKDKREIAQAYTGMKETNR
VLESQLQSQKKAFENEVEALRGEIQALKEENNRQQQLLAQNLQLPPEARIEASLQHEITR
LTNENLDLMEQLEKQDKTVRKLKKQLKVFAKKIGELEVGQMENVSPGQIVDEPIRPVNIP
RKEKDFQGMLEYKKEDELKLVKNLILELKPRGVAVNLIPGLPAYILFMCLRHADYLNDDQ
KVRSLLTSTINGIKKILKKRGDDFETVSFWLSNSCRFLHCLKQYSGEEGFMKHNTTRQNE
HCLTNFDLAEYRQVLSDLAIQIYQQLVRVLENILQPMIVSGMLEHETIQGVSGVKPTGLR
KRTSSIADEGTYTLDSIVRQLNTFHSIMCQHGMDPELIKQVVKQMFYIIGAVTLNNLLLR
KDMCSWSKGMQIRYNVSQLEEWLRDKNLMNSSAKETLEPLIQAAQLLQVKKKTDEDAEAI
CSMCNALTTAQIVKVLNLYTPVNEFEERVLVSFIRNIQMRLRDRKDSPQLLMDAKHIFPV
TFPFNPSSLALETIQIPGSLGLAFLTRV
NT seq
5487 nt
NT seq
+upstream
nt +downstream
nt
atggcagcatccgagctctatacaaagcatgcaagggtttggatccctgacccggaggaa
gtatggaaatctgcagagatcctcaaggactataagcctggggacactgttcttcggtta
cgtttggaggaaggcacggatttggaataccgtctcgatgccaagacaaaggagctcccc
cctctgagaaacccagacatcctggtgggagagaatgacctcactgccctgagttatctc
catgagccagctgtacttcacaatttgaaagtgcgatttatagactccaaactcatttat
acctactgcggcattgttcttgtagctataaacccttatgagcagttacccatctatggc
tcagacatcattaatgcatacagtgggcagaatatgggggacatggatccccatattttt
gcggtggcggaagaagcatataaacaaatggccagggatgagcgcaatcagtcgattatt
gtaagtggagaatctggagcggggaaaacggtctctgccaagtatgccatgagatacttt
gcaacagtcagtggttctgccagtgaaacaaatgttgaagaaagagtgttggcctccaat
cccatcatggagtctataggtaatgcaaaaaccacaaggaatgataacagcagtcgcttt
ggcaaatacattgaaattggctttgataaacgctacagaatcctaggtgcccacatgaga
acctatttgctggaaaaatctagagtggtgtttcaggccgaagaagagaggaattaccac
attttctatcagctctgcgcatctgcttcactgcctgagttcaagatgcttcgactgggc
actgccaatgatttccattacacaaagcaaggaggcagtccagtgattgaaggagttgat
gaccagagggaaatgaaaaacacaaggcaagcttgcaccttactaggaattggagactcg
tatcagatgggaatattcagaattttagctgctatacttcacctgggtaatgtggaattt
aagtctcgggattcagatagctgtttagtcccaccaaaacacgcaccccttaatatattt
tgtgacctcatgggtgtggagtacgaagagatgtctcattggctgtgtcacaggaagctt
gttactgctgctgagacctacatcaagcccatttccaggctacaggccaccaatgccaga
gatgccctggctaaacatatatatgctttcttgtttaactggattgtgtgtcatgtcaac
aaagctcttcattcctcaacaaagcagaattcatttattggagtccttgatatttatggg
tttgaaacattcgaaatcaacagctttgaacaattttgtatcaactacgctaacgaaaag
ctccagcagcagttcaatttgcatgtttttaagttggagcaagaagaatatatgaaggag
caaattccatggacattgattgatttttatgataaccaaccttgtatcaatcttattgaa
gcaaaaatgggtattctggatctgcttgatgaagaatgcaagatgcccaaagggtcagac
agcacctgggcccagaagttatacaatactcatctcaaaaaatctgcattatttgaaaag
ccgcgtctgtctaatgtggcttttattatcaaacactttgcagacaaggtagagtaccag
tgtgaaggttttctggaaaagaacaaagatacagtgtttgaagaacaaattaaagtgctg
aaagcaagtaagtttacactgctaacagaactgttccaagaagaggagcagatcttgagc
cctacatcttctgcaccaccctcaggccgtactctgctatcccgcactggtctgcgttcc
ctcaagcccaagcctgaacagacaagcaaggagcataaaaaaactgtaggacatcagttc
agaaattcccttcaccttctgatggagactctcaatgccacaactccacattatgtccgt
tgcattaagccaaatgacttcaagtacccgttcacatttgactctaaacgagcagtgcag
cagcttagggcttgtggcgtcctggaaaccatccgaatcagtgctgctggatttccttct
aggtggacatatcaggaattttttagcagatatcgtgttttaatgaagcaaaaagatgtc
ctcagtgataggaagcaaacctgcaaaaatgttctggagaagcttattttggataaggat
aagtaccagtttggtaagacaaagatttttttccgtgctggccaagtggcctatctggag
aagatccgagcagacaagctgagaatggcctgtatcaggatccagaagacaatccgagga
tggcttttgaggaagaaatacttgcgcatgaggaaagcagccataacaatccagcgctac
gtcagaggataccaggcacgatgttatgcacagtttctgcgtagaacacaggccgcgatt
attatccagaaattccaaaggatgtatgtcgttcggcaaaagtaccgtcatatgcagtcc
attacccttgctctccagtcgtatatgcgtggttatgcagccaggaagagatttcagggg
atgcttagagcacacaaagctaccatcatccagaagcatgtgcgcggctggttagcccgt
gtcacttataagagaaatttgagtgctattgtgtacctgcagtgttgttaccgcaggatg
atggccaaaagggagctgaagaagttaaagatagaggcacgctcagtggaacactacaag
aaactcaacaatgggatggaaaacaagatcatgcagttgcagcgtaaagttgatgagcag
aataaagacaacaaatccttgctggagaggctaacacacctggaggtcacgtacaatact
gaaaaagataagctgagaagcgacgtcgacagactgcgccattttgaagaggaggccaaa
aatgcagcaaacaggatggtcagcttgcaggacgagcttgccaggcttaggaaagagctg
cagcaaacacagacggaaaagaacaagattgaggaacgggcagagaagtaccagaccgag
actgaaaagctggttgctgagctgagagaacagaatgctttgctgaaagctgagaaagag
gaactgaatcttttaatccaggagcaggcaaaaaaaatgacagaggatatggaaaagaaa
attatagaagaaacaaagcagttggagcttgagctgaatgatgaacgactgaggtaccag
aatctcctaaacgagtacagccgcctggaggagcgatatgatgaccttaaagatgaaatt
aataccatgagtcctccaaagccaggacacaagcgcacagactctactcatagcagcaat
gaatcagaatacacttttagttcagagatcacagagtcagaagattacccatatcgaaat
gaggagcctgctgacagaaaaactccgctggacatgtccctgttccttaagcttcagaaa
cgggtaaaggaacttgagcaggaaaagcaagtaatgcaagatgatttggataagaaggag
gagcagataatccgagccaaaataatggaggaggcaaagactccaactagaggtacagaa
ctggaatatgaatcactcaagcgtcaagaactggaatctgaaaataaaaaacttaagaat
gagttaaatgagctgcgaagggcaatcactgagaaagcctccccagatgctacaggccct
ggtggaactgtctataaagttctcttggagcagatgacgtcagtaagtgaggaacttgaa
gtacgcaaggaagaagtccttatactgaggtcccagttggtgagccaaatggaagccatt
ccacacaaggatgacaaggacacaatgaccgattccatggtcctctctgaggatgtacag
aagatgaaggataaaagggaaattgctcaggcctacactggcatgaaggagacaaatagg
gttttggaatcccagctgcaatcacagaaaaaggcctttgagaatgaagtggaagctctc
agaggtgagatccaggctctaaaagaggagaacaaccggcagcagcaacttttagcccag
aacctccagttgccacctgaagcacgaatcgaagccagcttgcagcatgaaatcaccagg
ctaaccaacgagaacttggatctgatggagcaacttgaaaagcaagataagactgtccgc
aaactgaaaaagcagttgaaagtctttgccaagaaaattggagagctggaagttggtcaa
atggaaaatgtttctcctggtcagatagtggatgaacccattcgtcctgttaatattccg
cgcaaagagaaggacttccaaggaatgctggaatataagaaagaggacgaactaaagctt
gtcaaaaacctcattttagaactgaagcctcgtggtgtcgcggtcaacctcattccagga
ctgccagcatatatcttgttcatgtgtttgcgtcatgctgattacctcaatgatgatcag
aaagttcgctccttgcttacatcaactattaatggtatcaagaaaatcttaaagaaaaga
ggagatgattttgaaacggtgtccttctggctgtccaattcgtgtcggttcctccattgc
ttgaagcagtacagtggagaagagggatttatgaagcacaacaccacacggcagaatgag
cactgtctgaccaactttgaccttgcggaatacagacaagtcttgagtgatctggctatt
cagatttaccagcagttggtcagagtgttggaaaatatcttgcagccaatgattgtttca
ggaatgctggagcacgagactattcagggtgtctcaggggtcaagcctaccggtcttagg
aagagaacttccagcatagcagatgaagggacgtacacattagactccattgtgaggcag
cttaataccttccattccataatgtgtcagcatgggatggatcctgaactcatcaagcag
gtggtcaagcaaatgttctacatcatcggtgctgtcacactcaacaacttgctcttgcga
aaggacatgtgctcttggagcaaaggcatgcagataaggtacaacgtgagccagttggaa
gaatggctgcgtgacaagaacctgatgaatagcagcgctaaagaaaccctggagccatta
attcaggctgctcagttactgcaggtgaaaaagaaaacagacgaagatgcagaagccatc
tgctccatgtgcaatgctctgactactgcccagattgtcaaggtgttgaacctgtacact
ccagtaaatgagtttgaagagcgggtgttggtatcatttatacggaatatacagatgcgt
ttaagggataggaaggactcccctcagctgctaatggatgctaagcatatcttccctgtc
accttcccattcaacccttcgtcgcttgccctagaaacaattcagattcctggcagtctt
ggccttgccttcctcacacgtgtttaa
DBGET
integrated database retrieval system
