Xenopus tropicalis (tropical clawed frog): 100495792
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Entry
100495792 CDS
T01011
Symbol
usp39
Name
(RefSeq) U4/U6.U5 tri-snRNP-associated protein 2
KO
K12847
U4/U6.U5 tri-snRNP-associated protein 2
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100495792 (usp39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xtr03041
]
100495792 (usp39)
Spliceosome [BR:
xtr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
100495792 (usp39)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
zf-UBP
UCH_1
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
100495792
NCBI-ProteinID:
XP_002932588
Xenbase:
XB-GENE-853496
UniProt:
A0A6I8QIU1
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Position
3:125760704..125767435
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AA seq
501 aa
AA seq
DB search
MNAEKRVKLEMEEEDDDDDDDERVVGKHGRYDFEDRRSRHCPYLDTINRSVLDFDFEKLC
SISLSHINAYACLVCGKYFQGRGLKSHAYIHSVQFSHHVFLNLHTLKFYCLPDNYNIIDS
SLEDITYVLKPTFTKQQIGNLDKQAKLSRAYDGTTYLPGIVGLNNIKANDYANAVLQALS
NVPPLRNYFLEEENYCDIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEMLQAVV
LCSKKNFQITKQGDGVDFLSWFLNALNSALGGNKKKKTIVTDVFQGSMRIFTKKLPHPDL
PSEEKEQLMQNEEYQEKMLESPFMYLTLDLPTAPLYKDEKEQLIIPQVPLFSILGKFNGI
TEKEYKTYKENFLKRFQLTQLPPFLIFCIKRFTKNNFFVEKNPTIVNFPITNVDLREYLA
EEFQSSHKNTTYDLIANVVHDGKPNEGSYRIHVLHHGTGKWYELQDLQVTDILPQMITLS
EAYIQIWKRRDDDDEKKQQGA
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgaacgctgagaagcgggtgaaactggagatggaggaggaagacgacgacgatgatgat
gatgagagagttgtaggaaagcacgggcggtatgactttgaagacagacgtagtcgccat
tgcccatatctggataccattaacaggagtgtcttggactttgattttgagaagctgtgt
tccatctctctttctcacattaatgcatatgcttgccttgtatgcgggaaatacttccag
ggtcgaggcttgaagtcccatgcctatatccacagtgttcagttcagtcaccatgttttc
cttaatctgcacacactgaagttctactgcctgccggacaactataatatcattgactcc
tccctggaagacattacgtatgtgctgaagccaaccttcaccaagcagcaaattggtaac
ttagacaaacaggccaagctttctcgagcatatgatggtaccacttacctcccaggcatc
gtgggacttaacaatatcaaagctaatgattatgccaatgctgttttgcaggctctctcc
aatgttcctcctctgagaaattactttctggaggaagagaattattgtgatattaagcgc
cctcctggggatatcatgttcctgcttgtgcagagatttggggaattaatgcgcaaactg
tggaaccccaggaattttaaggctcatgtctccccacatgagatgctccaggctgttgtt
ctttgcagcaagaaaaatttccagatcaccaagcaaggtgatggagtggactttctttct
tggttcctgaacgcacttaattctgctcttgggggcaacaagaagaagaagaccattgta
acagatgttttccaaggatcaatgcggatatttaccaagaagttgccacaccctgatttg
ccttcagaggagaaggagcaactcatgcagaatgaagaataccaagaaaaaatgttggaa
tcaccctttatgtacctgaccctggacctccccactgcccctctgtacaaagatgagaag
gagcaactgatcatcccccaggtccctctcttcagcatcctgggcaagttcaatggaatc
acagaaaaggagtacaaaacatacaaggagaatttcctgaagcgattccagctgacccaa
cttcccccatttctgatattctgcattaagcgctttaccaaaaacaatttctttgttgag
aagaacccaaccattgtgaatttccccataacgaatgtggatctgagagaatacttggca
gaagaattccaatcttcacacaaaaacacaacctatgatctcattgccaatgtagtgcat
gatgggaagcccaatgaaggctcataccgtatccatgtcctgcatcatggcacaggaaaa
tggtatgaattacaagatcttcaggtgacggacatcttgccccagatgattactctgtct
gaggcctatatacagatctggaagagacgagatgatgacgatgagaagaagcagcagggt
gcttaa
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