Xenopus tropicalis (tropical clawed frog): 100495820
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Entry
100495820 CDS
T01011
Symbol
vim.2
Name
(RefSeq) vimentin
KO
K07606
vimentin
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
100495820 (vim.2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xtr03019
]
100495820 (vim.2)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
xtr04812
]
100495820 (vim.2)
04147 Exosome [BR:
xtr04147
]
100495820 (vim.2)
Messenger RNA biogenesis [BR:
xtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Factors that have mRNA localization signals
100495820 (vim.2)
Cytoskeleton proteins [BR:
xtr04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filaments
Type III
100495820 (vim.2)
Exosome [BR:
xtr04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
100495820 (vim.2)
Exosomal proteins of other cancer cells
100495820 (vim.2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Filament
TolA_bind_tri
Cep57_CLD_2
DUF1664
Laminin_II
Tropomyosin
IFT57
Baculo_PEP_C
TPR_MLP1_2
EzrA
NPV_P10
PspA_IM30
FlaC_arch
HAUS6_N
DUF3450
COG2
Seryl_tRNA_N
AAA_13
DUF4407
DivIC
DUF3141
Fez1
COG3_N
FKBP26_C
CCDC138_cc
CENP-F_leu_zip
Fzo_mitofusin
Taxilin
DUF4201
Sec10_N
Prefoldin_2
YabA
Motif
Other DBs
NCBI-GeneID:
100495820
NCBI-ProteinID:
XP_002941006
Xenbase:
XB-GENE-920288
UniProt:
F6X8X4
LinkDB
All DBs
Position
1:22138005..22144217
Genome browser
AA seq
374 aa
AA seq
DB search
MRNTSYSQKSLTVNESSRMRGQSSSGHDNLAFSQGQGGIKQTVDEAIPKVFVYRPNEKEE
LQELNNRFAGYIHKVHSLEQKNKALRTETEELTARLKERGPGISDEYDKEFKELKELIEK
LTKEKGMAEIERGNLEEEIDIWNAKCDEELILKAEAEQTLREFRQDVDDATIQKLELERK
VEQLIDEIEFLKKLHDEEVADLLRQIEESKVSAELDSSRPDLAAAVKAIRAQIEQEVTKN
IQDAEKWYKTKLGSLKGQVSKNEDKMKTIREDISRYSSQVSDLQSEIDSLRSRNEALEKQ
LEDMEEQHLEQVAALHEIISHLEGQLLETKADLARYLQDYQDLLNIKIKLDAEIAVYRKL
LEEEEQRLGIKTES
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atgagaaacacttcctactctcaaaaatctctgacagtcaatgaatccagcaggatgcgc
ggccaaagctcttctggtcatgataaccttgctttttcgcaaggccagggagggattaag
cagactgtagatgaagccattcctaaggtcttcgtttatcggccaaatgagaaggaagaa
cttcaagagctgaataaccgctttgccggctacatccataaagtccattctttggagcaa
aagaacaaggccctgcggactgagactgaggagctgacagcccgcttgaaagaaaggggt
cctggcatttcagatgagtacgacaaggaattcaaggagctgaaagagctgattgagaag
ttaaccaaagaaaagggcatggcagaaatcgagaggggaaatctagaagaagaaattgat
atctggaatgcaaagtgcgatgaagagctaatccttaaagcggaagctgaacagaccctg
agagaattccgtcaggatgtggatgacgcaaccattcagaaacttgaactggagaggaaa
gttgagcagctgatagatgagatcgaattccttaaaaagcttcatgatgaagaagtggct
gatttactaaggcagatcgaggaatcgaaggtctcagcagaactggatagcagtcgccct
gacctggctgcagcagttaaggcaatacgtgctcaaattgagcaggaagtcaccaaaaat
atccaggatgcagagaagtggtacaagaccaagcttggttccctaaagggacaggtctcc
aagaatgaagataagatgaagaccatcagggaggatatcagcaggtactcctctcaagtg
tcagatctacaaagtgagattgattccttgaggtcccgcaatgaagctttggagaagcag
cttgaggatatggaggaacagcacctggaacaagtggcggccctgcatgaaatcatctct
cacctagagggtcagttactagagaccaaggctgacttagcccgctatctgcaagattac
caggatctgctcaacatcaagatcaagctggatgctgagatagcagtctacaggaaactg
ctggaagaagaggaacaaaggcttggaattaagactgaaagctag
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