Xenopus tropicalis (tropical clawed frog): 100496040
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Entry
100496040 CDS
T01011
Symbol
taf1c
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit C
KO
K15214
TATA box-binding protein-associated factor RNA polymerase I subunit C
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xtr03021
]
100496040 (taf1c)
Transcription machinery [BR:
xtr03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
100496040 (taf1c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF1C_beta-prop
TAF1C_HB
TAF1C_C
Motif
Other DBs
NCBI-GeneID:
100496040
NCBI-ProteinID:
XP_031750868
UniProt:
A0A803JSI6
LinkDB
All DBs
Position
1:215211027..215228724
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AA seq
1022 aa
AA seq
DB search
MEFPGSLFPSFYSEGPCAREAPTSHSVFGLGEHSKVQHSNSAQDGYKFIPLYSRSAERWS
PTSPAPIPLLPPNPGSGIPPVLVSDIVQEMRAAVPLRNTLVRKSSVQLDFTNQLGNFSLD
HSDTAFQCMGQLLEPHCYLGDKQLYRKVRETTKKMTGMLQSLRHAMHRDCPYSYSDSQLR
CLSFLACDWLQDIPPVMLGQCVHEGLAEQWSQLQYSTQNTGGALSYSAYSEGHYGCLIFP
HGEAMNELHFQQVKLNGGGHRVKLLEDPAVFELNGRIQQVASAKGGSSEEVLVGVRSNYH
LASWAFSSQDPPRALRVVDTQSPSTCINVSPYLPGELCVCTEQGGLYLWNVETGLELLRH
DPDTLLFRDDPEWRWSDYTSHPRVLSYADRTGVQCVDMRAPNSQGLDLFHIGQEASCQRG
ERVILPQCLRGENPAHCLITTQYSVYIMDERFPLVPLLKWDHMFQSPPCFAHVVPNGTSS
QSNKVLLGSQRGETLLLQYTGGTLTPPQMLFPTLSLPPPSECLAHLPVLQPLHQDYVAQR
LASPGAGLAAAHVTSDQDSVIVFSLTELGDLFYLPLLHQAAESQEYWGNDQDPSCSPVSD
QGASITNQREQHEGQSPGGPHSPQRASALSNHNAESMISRVEGQTPGGGGATASLPELDP
TVCPLSSESDPSTQNGSAPVANGSAPVANGSARVANGCVYSTNLQPENRTGVSHLSSWSL
RCLQRWLRALLLGVAPKGPGRPKFRTKKFLKGLEVGESGPELAEQRRTLLESMKGGTLVR
LDTPPVSGVLGPLNPQTWKDPLSQRLTAAWNGQLGSWWEEFLGLNRHSKVQSLRERRRRQ
KLQRAKSLSRLSGSFASSLSLDSSACDMDQGSVWSCHSEPLSEPEPRPSPIGRKRLRSPP
PGQEPVWADTQDSAASTGTLHRDLGGNSQTPQDSSTQSHAPNSPLVSSQFLRSRGIPRER
RQTVQDFISLLGAPTEPQTHPRNPPDSAFPSQNFSLSQQSQSLSQRSQSRSQQSKKRPRM
GF
NT seq
3069 nt
NT seq
+upstream
nt +downstream
nt
atggagtttccaggctctttgttcccctcattttacagcgaggggccctgtgccagggag
gcccccacttcccactctgtgtttggcctgggggaacacagcaaagtccagcacagtaac
agcgcgcaggatggttacaagttcattcccttgtacagcagatctgcagaacgttggagc
ccaaccagcccggcacccatcccactgctgcctcctaaccctggttctggaatccctccg
gtgctggtatccgacattgtacaagaaatgagagcagcggttcccctgagaaatactctt
gtgaggaaaagcagtgtacaactggatttcactaatcagttgggcaatttctcattggat
cacagtgacacagcctttcagtgtatggggcaactcctggaaccacactgctacctggga
gataagcagctttataggaaggtgagagaaaccacaaagaagatgacggggatgctgcag
tcgctgcgccatgcgatgcacagagattgcccttattcttactctgactcccagctgcga
tgcctctcgttcctggcatgcgattggctccaggatatccccccagtgatgctgggacag
tgcgtccatgaggggctggcagagcagtggagtcagttgcagtacagcactcagaacaca
gggggagctctgtcttactctgcgtattctgaggggcactatggctgtttaatcttccct
cacggagaagcaatgaatgagttacatttccagcaggtgaaactcaatggcgggggccac
agggtgaaactgctagaagatccggctgtgtttgaacttaatgggcgaatccaacaagtg
gcctcggccaaggggggatcatcggaagaagttctggtaggagttcgatccaactaccat
ctggcctcctgggcattctcctcccaagatcccccaagggccctccgggtggtcgatact
cagagccccagcacctgtatcaatgtcagcccctacctgcctggggagctctgcgtttgc
actgaacaggggggtctttatctgtggaacgtggagactgggctggagctgcttcgccat
gatcccgacaccctgttattccgtgatgatcccgagtggagatggagcgactacacctcc
cacccgcgggtgctgagctacgcagacaggacaggagttcagtgtgtggacatgagggcc
cctaattctcaggggttggaccttttccatattggacaagaagcttcgtgtcagagagga
gagagagtcattttaccccagtgcctgagaggggagaacccagcccactgcctcattact
acccagtactcggtttacatcatggacgagcgctttccattggttcccctgctgaagtgg
gatcacatgttccagtccccgccctgctttgcccacgttgtccctaatgggacgagcagc
caatccaacaaggttctgctgggaagccagcggggggaaaccctcctgctgcaatataca
ggtgggaccctcacgcccccccagatgctcttcccaaccctgagtctccccccaccctca
gaatgcctggcacacctgcctgtattacagccccttcatcaggactatgtggcacagcgg
ctggcatccccaggagcaggattggctgcggcccacgtgacatcggaccaggattctgtt
atcgtcttcagcctgacggagctcggggatctcttctacctgcccctgttgcaccaagcg
gccgagagccaggaatactggggcaacgaccaagatccatcctgtagcccagtctctgac
cagggggcttctataactaatcagagagaacagcacgaggggcaaagcccaggagggccc
cactccccccagcgtgcctcagccctgtccaatcacaatgcagaatccatgatttcccgt
gtggaaggacagactccggggggaggtggcgccacggcaagtcttccagaactggaccct
acagtatgtcctctgtcttccgaatctgaccccagcacccaaaatggctctgcccccgtg
gctaatggctctgcccccgtggctaatggctctgcccgcgtggctaatggctgtgtctat
tccacgaaccttcagccagaaaacaggacaggcgtttcccatctcagttcctggtctctg
cgctgcctgcagcggtggctacgggcccttctcctcggtgtggccccaaagggtcccggc
cgccctaagtttagaacaaagaagttcttgaagggcctggaggtgggcgaatctgggccg
gagttggccgagcagcgcagaaccctcctggagagtatgaagggcggaacgttggtgcgg
ctggacacccctccagtctcgggagttctagggcccctgaacccccaaacctggaaggac
ccgctaagccaaaggctgacggctgcttggaatgggcaactgggctcgtggtgggaggag
ttcctggggctgaaccgacacagcaaggtgcagtctctgagagagcgacgccggaggcag
aagttgcagagggcaaagtcgctgagcaggttgtctgggagcttcgcctcctccctcagt
ctggactccagcgcctgcgatatggaccagggttctgtgtggtcctgtcatagcgagccc
ctctctgagccggaacctcggcccagtcccataggcaggaagagactgaggagccctccc
ccgggtcaggagcctgtttgggccgatacacaggactccgcagcttctacagggactctg
catagagatttggggggcaactcccagacaccccaagactcttctacacaaagccacgcc
cccaactctcccctggtttcctctcagttccttcgctccagggggatcccccgagagagg
agacagactgtccaggatttcatctctctcctgggtgcccccaccgagccccaaactcac
cctcggaacccccctgactccgccttcccgtctcagaacttttccctctcgcagcagtct
cagtcgctctcccagagatctcagtcccgttcccagcagtcaaaaaagagaccccgcatg
ggattctga
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