| Entry |
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| Symbol |
tnrc6c
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| Name |
(RefSeq) trinucleotide repeat-containing gene 6C protein isoform X1
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| KO |
| K18412 | trinucleotide repeat-containing gene 6 protein |
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| Organism |
xtr Xenopus tropicalis (tropical clawed frog)
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| Brite |
KEGG Orthology (KO) [BR:xtr00001]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:xtr03019]
100496469 (tnrc6c)
03036 Chromosome and associated proteins [BR:xtr03036]
100496469 (tnrc6c)
Messenger RNA biogenesis [BR:xtr03019]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100496469 (tnrc6c)
Chromosome and associated proteins [BR:xtr03036]
Eukaryotic type
Gene silencing
piRNA pathway
100496469 (tnrc6c)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
10:complement(45695768..45751803)
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| AA seq |
1875 aa
MEEKKKKKQEEKKKKEGAQKKAAEQKTKVPEPTKSGSNQPQPAAASTSTSTVPNSNGKRA
SANGQQSAASRYLPREVPPRFRQQEQKQLLKRGQPLPAGTLAIGNPTQDTGQARVSPPPP
QGAGGTPHPSKAHSDLSHSGLGDHYENSHWGLQPSLRGEATCSWDKVIIDRTDKEAWPSI
TGTESESASECTTDTDSASNCGSEKSSMATSAQGNFTGHTKKTNGNNGANGALIQSTSNQ
SALGAGGANGNGNLARVWGVAPGSSSGIAHCPIGGGDGKVDNMIGESRSHNCWGASNPNT
GINLNLNPNANPAAWPVLGHEGTLGGGSPSSISSPVGAIGQNMGNQNGNAAGSLGAWRNL
QSQESTEPQTSNSQNVSFSVQPQNLNTDGPNNTNPMNSSPNLINAMQTNGLPNWGMAVGM
GGIIPPHLQGLPGANGSVSQVSGAGGDGTGSSVWGLSQGGPSVGSCGSGFSQEGGDGSSK
QNGCAVQKDGSGMSAWDSGPPSSPGVLPWGRGRGSVGGMHPGPWGHTGHSTSNGVNGEWG
KVPNQHSSNDMNGKGPTGWDSPSVGMQSTQQGGEQMNSRAKAVASVTAANDRCTGAGNAN
EGKGGDGQQGDPGMAEQMPRQDLDPRVLSNTGWGQVPVRQNIAWELEEFQRPDHKNVGTE
AWGGSNTQPSNSGGKSEGSIMNSTNTSSVSGWMNTQPVSAPVSASWGEKTPNGPGGWGEH
ASSTVVNAAAKSGHAWSASANQEDKSPTWSEPHKSKPQGWADGQKSNPSWSSTGGDWTDG
PPVPQHITDGKKNGTGWDSDSKPGSGWNENSRPGTSGWGNGTNTKNNSGTGWGEPMKAPQ
QQNWANKPQENNVSGWGGAASVKQNGSVWIGGPVPATPPTKQKDAGADSTGWQEPSPPSI
RRKMEIDDGTSAWGDPSNYIKTVNMWDRNNPVSQSIPATNTNSAATPSTPPNTNMVEPQP
THQPSAQQNRSPLLGPGWGDLPNVNSKTEASWGEPPSPSAAVDKGTSAWGKPKNSTSGWG
DGSAEPPGTYGRTSAPAAAAAPMLCKPAPKSMQEGWGSSGEEAGLGSQWEEDEGDMWNNA
ASQDSNSSCNSWGNGPKKGLSKVIKTPSKSDEVWIMSRLTKQLTDMGFPKEPAEEALKSN
NMNLDQAMSALLEKKVEIDKRGLGLADYNVMVTKPLSCRQPPISKESSMDRPTFLDKLTI
SLSNQDGGLAEEPTSSPFLPSPSLKLPHPNSALPNQALGAMTAGLGMQNLNSTRQMQSGN
LGMFGNSGAAQARSMQQQQQPPVQPLNSSQPSLRAQVPQFLSPQVQAQLLQFAAKNIGLN
PALLTSPINPQHMTMLNQLYQLQLAYQRLQLQQQMLQAQRNVSGPMRQQEQQVARTINNM
QQQIQQHQRQLAQALLMKQQQQPPPQHAPLHPPAGKSALDTFSSHTPAPGLSDLHTKEQQ
SSSSTFPPYPLVAGLNPGMNVNNMDMAGSLSVKDSSQSQSRLPQWTHPNAMDSLTNAASP
LDPSPGKPGALPGGLNIGPPGKSSLDDAYSRYDLLSNSESPTSPPVPVSDSWSRAKSESE
KISNGSSINWPPEFHPGVPWKGLQNIDPENDPDVTPGSVPTGPTINTTIQDVNRYLLKSG
GKLSDIKSTWSSSPISHTQASLSHELWKVPRNTTAPSRPPPGLTNAKPSSAWSSNQLGWT
SSYSSGSTWSTDSSGRTSSWLVLRNLTPQIDGSTLRTLCLQHGPLITFHLNLTQGNAVVR
YSSKEEATKAQKSLHMCVLGNTTILAEFAGEEEVNRFLAQGQPLPPTSSWQSNTGNSQPR
LGSAGGSHTLVRSDAAHWNPPCLGSKGNNDLLWGGVPQYSSSLWGPPGSEDARIIRSPTP
LNTLLPGDLLSGESM |
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| NT seq |
5628 nt +upstreamnt +downstreamnt
atggaagaaaagaaaaagaaaaagcaggaagaaaaaaagaagaaggagggagctcagaag
aaggctgctgaacaaaaaaccaaagtgccagaaccaaccaagagcggttccaaccagccc
caacctgcagctgccagtacttctaccagcaccgtcccaaacagcaatggcaaacgggca
tctgccaacggccagcagtctgcggcctcacgttacctgccgcgtgaggtgcccccgcgc
ttccgtcagcaagaacagaagcaacttttaaaaagaggtcagccattgcctgccgggact
ttggccattggtaacccaacacaggatactggacaagccagggttagcccccctccaccg
caaggggctggtggaaccccccatccctcaaaggcccactctgatctcagtcacagtggt
ttgggagaccattatgagaattcccactggggactgcagccgtctctccgaggtgaagcc
acttgtagctgggataaagtgataatagacaggactgacaaggaagcgtggccttccatt
actggaactgagagtgaatctgcctcagaatgtactacagacactgactctgcctccaac
tgtggctcagagaaaagtagcatggctactagtgcccaaggcaacttcactggacataca
aagaaaacaaatggcaataatggcgccaatggagcactcatccaaagcacttctaaccag
agtgcccttggagctggtggggcaaatggtaatgggaacttagccagagtttggggtgtc
gctccaggctccagctctggcattgctcactgccctattggtggtggggatggcaaggtg
gacaacatgattggggagagcaggagtcataactgctggggcgcttccaacccaaatact
ggcattaatcttaaccttaacccgaatgccaacccagctgcctggcctgtacttggacat
gaagggactttgggaggcggcagtccttccagcatttcaagtccagtcggtgccattgga
cagaacatgggcaaccagaatggaaacgcagctggtagtttaggtgcctggaggaacctg
cagtcacaagagagcacagaaccacaaacgtccaattctcagaatgtgtctttcagcgta
caacctcagaaccttaacactgatggaccaaataacactaaccccatgaattcttcacca
aaccttattaatgcaatgcagacaaatggactgccaaactgggggatggctgtcggaatg
gggggcatcatcccaccccacctgcaaggccttcctggtgctaatggttcagtttctcaa
gtcagcggggcgggaggtgacggcacgggcagctcggtgtgggggttatcgcagggcggc
ccgtctgtaggaagctgcggttcagggttcagtcaggaaggaggagatggcagctctaaa
caaaatggctgcgcagttcagaaagatggcagtggaatgagtgcatgggattcaggacca
cctagtagccccggggtgctgccttgggggagaggcagaggcagcgtaggaggcatgcat
cccggaccatggggtcatactggacatagcacaagtaacggtgtgaacggtgagtggggt
aaggtcccaaaccagcattccagcaatgacatgaatggaaaaggacccacagggtgggac
agccccagcgttggcatgcagagcacccagcagggaggtgagcaaatgaattctagggcc
aaagcggttgcatctgtcactgcagccaacgacagatgcaccggcgctgggaatgccaat
gaagggaagggaggagatggtcagcagggagaccctgggatggcagagcagatgccaaga
caagatcttgacccgagagtcctttccaataccggctggggacaggtccccgtcagacag
aatattgcatgggaattggaagaatttcagcgtcccgatcataaaaatgttgggacggag
gcctgggggggttcaaatactcagccttcaaactcagggggaaagagtgaagggtccatc
atgaacagtaccaatacctcttcagtatcggggtggatgaacacccaacctgtgtctgcc
cctgtaagtgcaagctggggagaaaaaacgccaaatggtccaggggggtggggggaacac
gcaagctctactgttgtcaatgctgctgccaaaagtggtcacgcttggagcgcgtccgct
aatcaggaggacaagtcgcccacctggagtgagcctcacaagtccaaaccccaagggtgg
gccgacgggcaaaaatcaaatccaagctggagttctacgggcggagactggaccgacggg
ccccctgttcctcaacacattaccgacggaaagaaaaacgggacagggtgggactccgac
agtaagcctggatctgggtggaacgagaactcgcggcctgggaccagcgggtggggaaat
ggcacaaacaccaagaataattccggtacaggctggggggagcccatgaaagctcctcag
cagcaaaactgggccaataaaccccaagagaacaatgtgagtgggtggggaggagcagca
tctgtaaaacagaatggatctgtgtggattggtggaccggtgccagcaacaccaccaacc
aaacaaaaggatgctggagctgattccaccggctggcaagagccttctccgccgtctata
cgccgtaagatggaaatagacgatggtacctcagcttggggtgacccgagcaattatatt
aaaactgtaaacatgtgggataggaataatccggtatctcagagcatccctgcaacaaac
accaactccgccgccactcccagcacccctccaaataccaatatggttgaacctcagcca
actcatcagccaagtgcccagcagaaccgatccccactgctcggtccaggctggggagat
ttgcctaatgttaactcaaagactgaagcctcttggggagagcccccatccccgtctgct
gctgtcgacaaaggcacttcggcatgggggaagcccaaaaacagcacttcaggttggggg
gacggctctgcggaacctcccggaacatatggaaggacaagcgctcctgctgctgctgct
gcccccatgctgtgcaaaccagctcccaaatctatgcaagaaggctggggtagtagtgga
gaggaggccggcctgggcagccagtgggaggaagatgagggagacatgtggaacaatgct
gcttctcaagacagtaactcctcctgcaactcgtggggcaacggccccaaaaaaggactt
tccaaggtcataaagactccaagcaagtccgacgaggtctggatcatgtcccgactgact
aaacagctcactgatatgggcttcccgaaagagcctgctgaagaggccttgaaaagtaac
aatatgaatctggaccaggccatgagcgctctcctggaaaagaaggtggaaatagacaag
cgtggattgggattggcagactataatgtgatggtcaccaagcccctgagctgccgccaa
ccaccaatctccaaagagtcttccatggaccgccccacttttcttgacaagctcaccatc
tccctctccaatcaggatggcggcctagcggaagagcccacttcttcaccatttttgcct
tcaccaagcctgaaactcccccatccaaacagtgcactccctaatcaggccctgggtgcc
atgacagcagggcttggcatgcagaacttgaattccactagacagatgcagagtggcaat
ctgggtatgtttggcaatagtggagcagcacaagccaggtccatgcagcagcagcagcag
ccaccagtgcaacctctcaactcatcccagcctagtcttcgtgctcaagtgcctcagttc
ttatcccctcaggttcaagcacagcttttgcagtttgcagcaaaaaacattggtctcaac
cctgcactattaacttcgccaattaatcctcagcatatgaccatgctgaaccagctctac
cagctgcagctggcgtatcagcgtttacaactccagcagcagatgttacaggctcagcgc
aatgtttccggacccatgagacagcaggagcagcaagttgcacgcacaatcaataacatg
cagcagcagatccagcaacaccaacggcagctggcccaggccctgctcatgaagcagcag
cagcagcctccccctcaacacgctcctttgcaccccccagcaggcaagtctgcgctggac
actttctcatcccataccccggcccctggcctgtccgaccttcacaccaaagagcagcag
tcttcatccagcaccttccccccatacccacttgtggctggactgaaccccggcatgaat
gtaaacaacatggacatggcaggcagtttgtcagtgaaggattcatctcagtcccagtct
cgtctgccacaatggactcaccccaacgccatggacagtctgacaaatgctgcttctcca
cttgaccccagtcctggcaagcccggtgcccttcctggggggttgaacattggtccccct
ggaaagtcctctctggatgacgcctacagtcggtacgacctcctgtccaacagcgagtcg
ccaacgagccctcctgtacctgtttctgacagctggtcacgtgccaaatctgagagtgaa
aagatctccaatggatccagcatcaactggcctcctgagtttcaccctggggtaccttgg
aaaggactgcagaatatcgacccggagaatgacccggatgtgactcctgggagcgttcct
acgggccctaccatcaacaccaccatccaggatgtcaatcgctatctactaaagagcgga
gggaaactgtctgatatcaagtccacgtggtcatccagccccatctcccacactcaagcg
tccttgtctcacgagctgtggaaagtaccaagaaacactacagccccatccagacctcct
cctggactgaccaacgccaaaccctcctctgcctggagttcaaaccaactgggctggaca
agctcctattcctctggttccacttggagtaccgacagctcaggaagaacaagcagctgg
ctggtcttgcgcaacctaaccccacagattgatggctctaccctacggacactgtgtctg
cagcacggccctctgataacattccatctgaacctcactcaaggcaatgctgtggtcaga
tacagctccaaggaggaagccaccaaagctcagaagtcactgcatatgtgcgttctgggt
aacactactatcctggccgagtttgctggcgaagaggaagtgaaccgtttcctggcacaa
ggacagccgctgccccccacctccagctggcagtctaacactggcaatagccagccccgc
ctgggatccgcagggggctcacataccttggtgcgcagcgacgccgctcactggaacccc
ccgtgcctcggcagcaaggggaacaacgacctgctctggggcggagtccctcagtactcc
agcagcttatgggggccccccggatcagaggatgcaaggatcatccgcagccccacccct
ctcaacaccctcctgccgggggatctgctgagcggggagtccatgtga |
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